BAC Information

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BAC

Clone NameB6Ng01-113M06
Chromosome5 (Build37)
Map Location 147,580,338 - 147,760,680
singlet/doubletdoublet
Overlap geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a
Upstream geneCyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12
Downstream geneMtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M06.bB6Ng01-113M06.g
ACCDH919476DH919477
length1,091689
definitionDH919476|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M06, 5' end.DH919477|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,580,338 - 147,581,426)(147,759,994 - 147,760,680)
sequence
gaattctgttgccataactgtgaaattaggctgaaagtcttaagacctca
gacaagtttacctcctttcaactacaggtcattttcaatcctaatgccac
aaatgggtttcctttactgaaggaggaagcgtactgcctcagtgctgcac
agcttcaaggctggaatgtacttacattgactaatccaaaatagtgctcg
ttgaccggaaactgttctggaccaatctctttctctaatgccgaggcatt
ggcgccctgtaaaaagaaaaccgcaatgatcaggatctacagtatttcta
taatgtacagtcatacaggctgagacagccttctaaggccacactcaagt
tacagcaaaccaacattattcacaaagaatgatattgaaaaattaatagc
tttaaaaaaaaagatttatttatttatttattatatgtaagtacactgta
gctatcttcagacacaccagaagagggcatcagatctcattacagatggt
tttgacctaccatgtagttgctgggatttgaactcaggaccttctgaaga
acagtcagtgttcttgaccactgagccatctctccagcccccaaaattaa
tagcttgtaatcacatgactaaatactagtttacacaagttagtcaggat
tcatgttcctagcatacttcccaccctctaagcaatcaaggaaaactgac
ttttatactgtaatagaacaagacttttgctggcaaccacctttggagcc
aaaggaaggaaggaaggaaggaaggaaggaagaaaggaagaaaggaaggt
aggtaggttgggttcacacagttcagggcccagccagcatgtgcaacagg
actccttaaggatgggagacccaactggactagtatctattaacctgctg
tcctggaggaagacccagaagtagcagccagatgcccacagggtaagcag
catcagtgggcctgcacagcacatgaagtcccaacaatggaagcagactt
tcttggatcaggaacctggtagaaaagagccggaagccatgagacaaacg
gacgactgacagagaacctccttcctcccgttccaatcatc
gtctttgcagagcgcctgccctgccctgccctgccctgccctgccctgcc
ctgccctgccctgccccagccaagcccaggacgcagcccctgcgccaggc
cctgccgtgcacacgggcggccaggttacctcccccgtgtgtttgcatag
gtgcgcgtctagcttccaggctttgttgtaactggcgctgcagtcgggaa
aggagcagatgaacctgctgggcagcgcggggcgcggcggcgcggggccc
tcacaggccccgacgaacgcatccgcgatggtcagcgacgacaccgcttc
cgcgactgacacccgcggctccagggcgacacgatcgggcccgggctgac
gcggggcagccacgtgccgtccccgggaacgcgggacgcaagccactggc
gcccggagactttgaacttccgggaacgcggcccgctaaggctccaggcc
ccgccccttagccccccccccacgcgcgccacgactgcgcatgctcccaa
aggccgtagagcccggttgcacatgcgcatccaggactcgtccacggcga
gaggcagccaggctctgggctctggtttcgcggcttagggaaacggaagc
gctgcttaaacgtcccaaatatcaacctgacatgacttgaggtggcctgt
tttttcacattccagtttttgccctctgctacctgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147580338_147581426
seq2: B6Ng01-113M06.b_48_1138

seq1  GAATTCTGTTGCCATAACTGTGAAATTAGGCTGAAAGTCTTAAGACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCCATAACTGTGAAATTAGGCTGAAAGTCTTAAGACCTCA  50

seq1  GACAAGTTTACCTCCTTTCAACTACAGGTCATTTTCAATCCTAATGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTTACCTCCTTTCAACTACAGGTCATTTTCAATCCTAATGCCAC  100

seq1  AAATGGGTTTCCTTTACTGAAGGAGGAAGCGTACTGCCTCAGTGCTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTTTCCTTTACTGAAGGAGGAAGCGTACTGCCTCAGTGCTGCAC  150

seq1  AGCTTCAAGGCTGGAATGTACTTACATTGACTAATCCAAAATAGTGCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAGGCTGGAATGTACTTACATTGACTAATCCAAAATAGTGCTCG  200

seq1  TTGACCGGAAACTGTTCTGGACCAATCTCTTTCTCTAATGCCGAGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCGGAAACTGTTCTGGACCAATCTCTTTCTCTAATGCCGAGGCATT  250

seq1  GGCGCCCTGTAAAAAGAAAACCGCAATGATCAGGATCTACAGTATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCTGTAAAAAGAAAACCGCAATGATCAGGATCTACAGTATTTCTA  300

seq1  TAATGTACAGTCATACAGGCTGAGACAGCCTTCTAAGGCCACACTCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACAGTCATACAGGCTGAGACAGCCTTCTAAGGCCACACTCAAGT  350

seq1  TACAGCAAACCAACATTATTCACAAAGAATGATATTGAAAAATTAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAACCAACATTATTCACAAAGAATGATATTGAAAAATTAATAGC  400

seq1  TTTAAAAAAAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTA  450

seq1  GCTATCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGT  500

seq1  TTTGACCTACCATGTAGTTGCTGGGATTTGAACTCAGGACCTTCTGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTACCATGTAGTTGCTGGGATTTGAACTCAGGACCTTCTGAAGA  550

seq1  ACAGTCAGTGTTCTTGACCACTGAGCCATCTCTCCAGCCCCCAAAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGTGTTCTTGACCACTGAGCCATCTCTCCAGCCCCCAAAATTAA  600

seq1  TAGCTTGTAATCACATGACTAAATACTAGTTTACACAAGTTAGTCAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTAATCACATGACTAAATACTAGTTTACACAAGTTAGTCAGGAT  650

seq1  TCATGTTCCTAGCATACTTCCCACCCTCTAAGCAATCAAGGAAAACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCTAGCATACTTCCCACCCTCTAAGCAATCAAGGAAAACTGAC  700

seq1  TTTTATACTGTAATAGAACAAGAC-TTTGCTGGCAACCACC-TTGGAGCC  748
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TTTTATACTGTAATAGAACAAGACTTTTGCTGGCAACCACCTTTGGAGCC  750

seq1  AAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAAGGAAGG  798
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAAGGAAGG  799

seq1  TAGGTAGGTT-GGTTCACACAGTTCAGGGCCCAGCCAGCATGTGCAACAG  847
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGTTGGGTTCACACAGTTCAGGGCCCAGCCAGCATGTGCAACAG  849

seq1  GACTCCTTAAGGATGGGAGACCCAACTGGACTAGTATCTA-TAACCTGCT  896
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACTCCTTAAGGATGGGAGACCCAACTGGACTAGTATCTATTAACCTGCT  899

seq1  GTCCTGGAGGAAGACCCAGAAGTAGCAGCCAGATGCCCACAGGGTAAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGGAAGACCCAGAAGTAGCAGCCAGATGCCCACAGGGTAAGCA  949

seq1  GCATCAGTGGCCCTGCACAGCACAGGAAGTCCCAACAA-GGAAGCAGACT  995
      |||||||||| ||||||||||||| ||||||||||||| |||||||||||
seq2  GCATCAGTGGGCCTGCACAGCACATGAAGTCCCAACAATGGAAGCAGACT  999

seq1  TTCTGGGATCAGAAACACTGGAGGAAGAGAGCCGGAAGCCAAGAGACAAA  1045
      |||| ||||||| ||| ||||  ||| |||||||||||||| ||||||||
seq2  TTCTTGGATCAGGAAC-CTGGTAGAAAAGAGCCGGAAGCCATGAGACAAA  1048

seq1  CAGACAGACAGACAGAGCACCTCCTTCCTCCCGTTCACATCATC  1089
      | ||| ||| ||||||| ||||||||||||||||||  ||||||
seq2  CGGAC-GACTGACAGAGAACCTCCTTCCTCCCGTTCCAATCATC  1091

seq1: chr5_147759994_147760680
seq2: B6Ng01-113M06.g_76_764 (reverse)

seq1  GTGGCAGGATGCAGAGGGC-AAAACTGGAATGTG-AAAAACAGGCCACCT  48
      ||||||||  ||||||||| |||||||||||||| |||||||||||||||
seq2  GTGGCAGGTAGCAGAGGGCAAAAACTGGAATGTGAAAAAACAGGCCACCT  50

seq1  TAAGTCATGTCAGGTTGATATTTGGGACGTTTAAGCAGCGCTTCCGTTTC  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATGTCAGGTTGATATTTGGGACGTTTAAGCAGCGCTTCCGTTTC  100

seq1  CCTAAGCCGCGAAACCAGAGCCCAGAGCCTGGCTGCCTCTCGCCGTGGAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCCGCGAAACCAGAGCCCAGAGCCTGGCTGCCTCTCGCCGTGGAC  150

seq1  GAGTCCTGGATGCGCATGTGCAACCGGGCTCTACGGCCTCTGGGAGCATG  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTCCTGGATGCGCATGTGCAACCGGGCTCTACGGCCTTTGGGAGCATG  200

seq1  CGCAGTCGTGGCGCGCGTGGGGGGGGGGCTAAGGGGCGGGGCCTGGAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCGTGGCGCGCGTGGGGGGGGGGCTAAGGGGCGGGGCCTGGAGCC  250

seq1  TTAGCGGGCCGCGTTCCCGGAAGTTCAAAGTCTCCGGGCGCCAGTGGCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGGGCCGCGTTCCCGGAAGTTCAAAGTCTCCGGGCGCCAGTGGCTT  300

seq1  GCGTCCCGCGTTCCCGGGGACGGCACGTGGCTGCCCCGCGTCAGCCCGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCGCGTTCCCGGGGACGGCACGTGGCTGCCCCGCGTCAGCCCGGG  350

seq1  CCCGATCGTGTCGCCCTGGAGCCGCGGGTGTCAGTCGCGGAAGCGGTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCGTGTCGCCCTGGAGCCGCGGGTGTCAGTCGCGGAAGCGGTGTC  400

seq1  GTCGCTGACCATCGCGGATGCGTTCGTCGGGGCCTGTGAGGGCCCCGCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGACCATCGCGGATGCGTTCGTCGGGGCCTGTGAGGGCCCCGCGC  450

seq1  CGCCGCGCCCCGCGCTGCCCAGCAGGTTCATCTGCTCCTTTCCCGACTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGCCCCGCGCTGCCCAGCAGGTTCATCTGCTCCTTTCCCGACTGC  500

seq1  AGCGCCAGTTACAACAAAGCCTGGAAGCTAGACGCGCACCTATGCAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCAGTTACAACAAAGCCTGGAAGCTAGACGCGCACCTATGCAAACA  550

seq1  CACGGGGGAGGTAACCTGGCCGCCCGTGTGCACGGCAGGGCCTGGCGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGGAGGTAACCTGGCCGCCCGTGTGCACGGCAGGGCCTGGCGCAG  600

seq1  GGGCTGCGTCCTGGGCTTGGCTGGGGCAGGGCAGGGCAGGGCAGGGCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCGTCCTGGGCTTGGCTGGGGCAGGGCAGGGCAGGGCAGGGCAGG  650

seq1  GCAGGGCAGGGCAGGGCAGGGCAGGCGCTCTGCAAAGAC  687
      |||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGGGCAGGGCAGGGCAGGCGCTCTGCAAAGAC  689