BAC Information

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BAC

Clone NameB6Ng01-114H18
Chromosome8 (Build37)5 (Build37)
Map Location 55,508,742 - 55,509,74148,026,976 - 48,027,911
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H18.bB6Ng01-114H18.g
ACCDH919993DH919994
length1,0531,106
definitionDH919993|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H18, 5' end.DH919994|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,508,742 - 55,509,741)(48,026,976 - 48,027,911)
sequence
gaattcccattatttacagtattcaaaattcttgtatcctaatatgtgtg
cctccagcgattcccagaattgtgaaccgtaagaaaaaaaatatcctaat
tcctgtacggttaaatataaccctacaggaattaggatatttgtgtgtga
actggtatcaaccattttcgtatctgactgtctcatttattattgagcat
gcttgactattaactatgtcaggcactcttgttgtatggggaaataactc
cctgcacgttatctgtgtttaaaaattgattacgctaaccccttttatgg
atgatgatgaaaaataaacttagcaaaagcatgtccagaaagcaaaccaa
ggtgtaaccaaggtgatttagacagattacatctataatctcacatgatc
actgaacatgttgactataaatgttctcattttcatttatggtgtatcta
ccttatcttcaaaaataaaggagcccttaatgagactctggataaattag
aataaatattcatgaaattgtattgcgtcccactcgacctgcaagaaaga
cacaaccaaccgtaatcttctgcggcaaaagtcttattgcttacttcttc
acgaagacccccaactgcgaaaatggcgccgcttttacagcccgcagcga
gacgtttcagcacctgatatggcgtgacatctcctgattccttgctcgcc
cctcacccgactgttacaccccgagaatgggagtgactgggagcaagatc
actctcacccctgcgtactacgcttgtttactagttcggcacagcggagg
ccagcgccatctcataatggcaactgctcgtggcccggctctccacaagt
tgagtattaaaactataaaatacaatcttctttcctagaaaatatggttt
acattgtacgtatatatgagaagctcacagtatttttctttgaggattta
taattccagcaaggagtgataataagtcttattcaaatcgattagcttct
tacaattatcatgagcaacaccgactaaacttacttgtctacacttgctc
ttc
gaattcctgggcttactcctctcaatgctggagtgtgacctagaaaggga
aaatgaaataaaccctttcctctccaaagtttccttacccctggttgttg
tgattataaaatgataaagagctataagattatgttctatgagggtatag
ttccgtatgggggaagggaaagcttgcaatcctaggatgacttcagatag
cttcacagaaacaaaggcaaagaggcggagaagttggcagaagttaactc
tatccacacttgaaagggatagaattgagaattttcatgctgtttggaat
tctacagaaattctgttccctctaaaaacatacgtatgcattttgaagtt
ttatcatcatccatgccagggatccatttgaatcaacaacatgaaacgca
aacctgactttggagtgaaatgcattttgattctgccaaatggtttttgc
atttaaatttcaaagaaatgtcaataatatataacttttattttccaaca
ttaaatgaaaacaaaaattcaatttcttcaataaaatgctcgcatttcca
agtgttcactgggcaaatccacatgtaatggcttttaggcatcatgtcat
cccatgggctgttctgctatgatcattgctatccatgtaatatgatatta
aatgaatatttagaaacttagaaaaagaacacagagccaaataagtcaca
aatccatgcttaggagtcttagaaagaaaaaggagaaaaccccagtgggt
ttgggtttctgggagttgggaagcaagaggaacaattggtataaactatg
tatgtataagttccaaaataacttttaatttagctcacaaaactatcagg
ctcctgcccctttttctcttttcctgtcagttcaatcttgcttgctgagg
actccattgatgccttgcacttcacgtgaagacctctctacctcatttat
caaagcaacatgtatgctctgtaaaggggattcttgggattgttacccca
ctagtgttgtacgaaagtttaaagtaacaaggacaggaatgggcttagag
tgtagaaaaaatgcttctgtcctcccactacttgaatgccagcatgctta
ctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55508742_55509741
seq2: B6Ng01-114H18.b_99_1092 (reverse)

seq1  GAAGAGGAAGTGTAGACAAGTAAGTTTAATCTGTTTTTCTCATGATAAAT  50
      |||||| ||||||||||||||||||||| || || || |||||||| |||
seq2  GAAGAGCAAGTGTAGACAAGTAAGTTTAGTCGGTGTTGCTCATGAT-AAT  49

seq1  TATAA-AAGTTAATTGGTTTTGAATAAATATTTATAATCACTTCTTACTG  99
      | ||| ||| ||| | | ||||||| || | |||| |||||| ||| |||
seq2  TGTAAGAAGCTAA-TCGATTTGAAT-AAGACTTATTATCACTCCTTGCTG  97

seq1  GAATTAAAAAATCCTCAAATATATAATTCTGTGAACTAATCATATAAATG  149
      ||||| | ||||||||||| | | ||| |||||| ||  ||||||| | |
seq2  GAATT-ATAAATCCTCAAAGA-AAAATACTGTGAGCTTCTCATATATACG  145

seq1  TAAAATGTAAAACAATATTTTCTAGGTAAGTAAATTTTATTTTATAGTTT  199
      || ||||| |||| |||||||||||| ||| | ||| |||||||||||||
seq2  TACAATGT-AAACCATATTTTCTAGGAAAGAAGATTGTATTTTATAGTTT  194

seq1  TAATACTCAACTTTGTGGAGAGCCGTGCCACGAGCAATTGCCATTATAAG  249
      ||||||||||| ||||||||||||| |||||||||| |||||||||| ||
seq2  TAATACTCAAC-TTGTGGAGAGCCGGGCCACGAGCAGTTGCCATTATGAG  243

seq1  ATGGCGCTGGCCTCCGCTGTGCCTAACTAGTAAACAAGCCTTGTACGCAG  299
      ||||||||||||||||||||||| ||||||||||||||| | ||||||||
seq2  ATGGCGCTGGCCTCCGCTGTGCCGAACTAGTAAACAAGCGTAGTACGCAG  293

seq1  GTGCGAGAGTGAACTCGCTCCTAGTCACTCCCATTCTCGGGGTGTAATAG  349
      | | |||||||| || ||||| ||||||||||||||||||||||||| ||
seq2  GGGTGAGAGTGATCTTGCTCCCAGTCACTCCCATTCTCGGGGTGTAACAG  343

seq1  TGGGGTGATGGGCGAGCAAGGAATCAGGAACTGTCACGCCATATCAGGTG  399
      | |||||| ||||||||||||||||||||  |||||||||||||||||||
seq2  TCGGGTGAGGGGCGAGCAAGGAATCAGGAGATGTCACGCCATATCAGGTG  393

seq1  CTGAAACGTCACGCTGCGGGCTGTAAAAGCGGCGCCATTTTCCCAGTTCG  449
      |||||||||| ||||||||||||||||||||||||||||||| ||||| |
seq2  CTGAAACGTCTCGCTGCGGGCTGTAAAAGCGGCGCCATTTTCGCAGTTGG  443

seq1  GGGTCTTCCTGAAGAAGTAAGCAATAAAGCTTTTGCCGCAGAAGATTACG  499
      |||||||| ||||||||||||||||||  |||||||||||||||||||||
seq2  GGGTCTTCGTGAAGAAGTAAGCAATAAGACTTTTGCCGCAGAAGATTACG  493

seq1  GTTTGTTGTGTCTTTCTTGCAGGTCGAGTGGGACGCAATACAACTTAATG  549
      ||| ||||||||||||||||||||||||||||||||||||||| || |||
seq2  GTTGGTTGTGTCTTTCTTGCAGGTCGAGTGGGACGCAATACAATTTCATG  543

seq1  AATATTTATTCTAATTTATCCAGAGTCTCATTAAGGGCTCCTTTATTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTCTAATTTATCCAGAGTCTCATTAAGGGCTCCTTTATTTTT  593

seq1  GAAGATAAGGTAGATACACCATAAATGAAAATTAGAACATTTCTAGACAA  649
      |||||||||||||||||||||||||||||||| ||||||||| ||| |||
seq2  GAAGATAAGGTAGATACACCATAAATGAAAATGAGAACATTTATAGTCAA  643

seq1  CATGTTCAGTGATCATGTGAGATTATAGATGTAATCTGTCTAAATCACTT  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTTCAGTGATCATGTGAGATTATAGATGTAATCTGTCTAAATCACCT  693

seq1  TGGTTACACCTTGGTTTGCTTTCTGGACATGCTTTTGCTAAGTTTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACACCTTGGTTTGCTTTCTGGACATGCTTTTGCTAAGTTTATTTT  743

seq1  TCATGATCATCCATAAAAGGTGCTATTGTACTCAATTTCTAAACACAGAT  799
      |||| ||||||||||||||| | ||  ||| ||||||| |||||||||||
seq2  TCATCATCATCCATAAAAGGGGTTAGCGTAATCAATTTTTAAACACAGAT  793

seq1  AACCTGCTGTGAGTTACTTCCCCATACAACATGAGTGCCTGACATAGTTA  849
      ||| ||| | |||||| |||||||||||||| ||||||||||||||||||
seq2  AACGTGCAGGGAGTTATTTCCCCATACAACAAGAGTGCCTGACATAGTTA  843

seq1  ATAGTCATGCATGCTCAATAATAAATACTACAGTCAGATACAAAAATGGT  899
      ||||||| ||||||||||||||||||   |||||||||||| ||||||||
seq2  ATAGTCAAGCATGCTCAATAATAAATGAGACAGTCAGATACGAAAATGGT  893

seq1  TGATACCAGTTCACACACAAATATCCTAATTCCTGTAGGGTTATATTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCAGTTCACACACAAATATCCTAATTCCTGTAGGGTTATATTTAA  943

seq1  CCGTACAGGAATTAGGATATTTTTCTTCTTCTGGTTCAAAATTCTGGGAA  999
      |||||||||||||||||||||||| |||||  |||||| |||||||||||
seq2  CCGTACAGGAATTAGGATATTTTTTTTCTTACGGTTCACAATTCTGGGAA  993

seq1  T  1000
      |
seq2  T  994

seq1: chr5_48026976_48027911
seq2: B6Ng01-114H18.g_236_1174

seq1  GAAAGCTTGCAATCCTAGGATGACTTCAGATAGCTTCACAGAAACAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTGCAATCCTAGGATGACTTCAGATAGCTTCACAGAAACAAAGG  50

seq1  CAAAGAGGCGGAGAAGTTGGCAGAAGTTAACTCTATCCACACTTGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGCGGAGAAGTTGGCAGAAGTTAACTCTATCCACACTTGAAAGG  100

seq1  GATAGAATTGAGAATTTTCATGCTGTTTGGAATTCTACAGAAATTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATTGAGAATTTTCATGCTGTTTGGAATTCTACAGAAATTCTGTT  150

seq1  CCCTCTAAAAACATACGTATGCATTTTGAAGTTTTATCATCATCCATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAAAACATACGTATGCATTTTGAAGTTTTATCATCATCCATGCC  200

seq1  AGGGATCCATTTGAATCAACAACATGAAACGCAAACCTGACTTTGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCATTTGAATCAACAACATGAAACGCAAACCTGACTTTGGAGTG  250

seq1  AAATGCATTTTGATTCTGCCAAATGGTTTTTGCATTTAAATTTCAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATTTTGATTCTGCCAAATGGTTTTTGCATTTAAATTTCAAAGAA  300

seq1  ATGTCAATAATATATAACTTTTATTTTCCAACATTAAATGAAAACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATAATATATAACTTTTATTTTCCAACATTAAATGAAAACAAAAA  350

seq1  TTCAATTTCTTCAATAAAATGCTCGCATTTCCAAGTGTTCACTGGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCTTCAATAAAATGCTCGCATTTCCAAGTGTTCACTGGGCAAA  400

seq1  TCCACATGTAATGGCTTTTAGGCATCATGTCATCCCATGGGCTGTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGTAATGGCTTTTAGGCATCATGTCATCCCATGGGCTGTTCTGC  450

seq1  TATGATCATTGCTATCCATGTAATATGATATTAAATGAATATTTAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCATTGCTATCCATGTAATATGATATTAAATGAATATTTAGAAAC  500

seq1  TTAGAAAAAGAACACAGAGCCAAATAAGTCACAAATCCATGCTTAGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAGAACACAGAGCCAAATAAGTCACAAATCCATGCTTAGGAGT  550

seq1  CTTAGAAAGAAAAAGGAGAAAACCCCAGTGGG-TTGGGTTTCTGGGAGTT  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAGAAAGAAAAAGGAGAAAACCCCAGTGGGTTTGGGTTTCTGGGAGTT  600

seq1  GGGAAGCAAGAGGAACAATTGGTATAAACTATGTATGTATAAGTTCCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAGAGGAACAATTGGTATAAACTATGTATGTATAAGTTCCAAA  650

seq1  ATAACTTTAATTTCAGCTCACAAAACTATCAGGCTCCTGCCCC-TTTTCT  698
      |||||||| | || ||||||||||||||||||||||||||||| ||||||
seq2  ATAACTTTTAATTTAGCTCACAAAACTATCAGGCTCCTGCCCCTTTTTCT  700

seq1  C-TTTCCTGTCAGTTCAATCTTGCTTGCTGAGGACTCCATTGATGCCTTG  747
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGTCAGTTCAATCTTGCTTGCTGAGGACTCCATTGATGCCTTG  750

seq1  CACTTCACGTGAAGACCTCTCTACCTCATTTATCAAAGCAACATGTATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACGTGAAGACCTCTCTACCTCATTTATCAAAGCAACATGTATGC  800

seq1  TCTGTAAAGGGGATTCTTGGGATTTGTTTACCCCACTAGTGTTGTA-GAA  846
      ||||||||||||||||||||||||   ||||||||||||||||||| |||
seq2  TCTGTAAAGGGGATTCTTGGGATT--GTTACCCCACTAGTGTTGTACGAA  848

seq1  AGTTTAAAGT-ACAAGGACAGAAATGGGCTTTAGAGTGTAG-ACAACCGC  894
      |||||||||| |||||||||| ||||||| ||||||||||| | ||  ||
seq2  AGTTTAAAGTAACAAGGACAGGAATGGGC-TTAGAGTGTAGAAAAAATGC  897

seq1  TTCTGTCCTCTCACTTACTGTATGCAGGCATGCTTACTTTCT  936
      |||||||||| ||||   || ||||  |||||||||||||||
seq2  TTCTGTCCTCCCACTACTTGAATGCCAGCATGCTTACTTTCT  939