BAC Information

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BAC

Clone NameB6Ng01-117L22
Chromosome5 (Build37)
Map Location 121,589,750 - 121,754,323
singlet/doubletdoublet
Overlap genePtpn11, Rpl6, LOC100039686, EG545802, AU042671
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299
Downstream geneTrafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L22.bB6Ng01-117L22.g
ACCDH922405DH922406
length1,1221,207
definitionDH922405|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L22, 5' end.DH922406|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,589,750 - 121,590,896)(121,753,100 - 121,754,323)
sequence
gaattcccagccttcttgcctcaagctacataagtgctcacacatgctgg
gcaagcttgtgtgctgtactgggatggaccccaggagcctagtaaatgct
cacacgctgggctccagccctgacctgcagattatacagagctttcaatt
tgctcccccaacttagtaactgaatcatgatgatgtaacagaacatcttt
ttttaaaaaatatataccaatgcacttagaagcaaagaggtacagactca
tgtaagttataaacattccctttttaaatattatgtatattaaataaagt
ttgaagaaaaaaataaatgcttgtgttcagaagttgagtaaaagaaatac
cacgcactccacacactgcttttgcaaataaagtacttactaatataaat
ggaaaattaaaaaaaaaaaaaaaacaaaaaaaaaacctctcaacaaatct
gcagtggcacagctgggcactggtggtgccacttttgatcccggtgcttg
cggggcagaggcaggcagatctttgtgagtttgaagccagcctggtccac
agagtaagttccaggatagcaagggctgtacagacaaagaaactctgtct
tgaaataacaaacaaaaagccctgcagcacaagaggcagtcttaataagc
cactcaggactgtccctacggtgctctgtcccgttctctgctcgcccctc
tgtgtatctctttcttgctggcccgcttcctctgtttcactccgcctctt
tccccacggttctccacccaactgccactttgttttcatttagcaattct
tttactcccaaagggcttaactcatccaaagttgggaagatggctacatt
ttgaactaattcattatactaaatgagttttgtcctgttgcttaatttaa
aatccgctgggcttgggctggagccatatagtgcagtggttaagacgcaa
gtgctctgcagatgaaagctaagttcccatcagcaccctggcagtgcaca
tctgttgcagggtctgattctctctctaccatgaccaggctccaccacat
ggaaatcataaaatagcagagaacagtagtgactgtttggtggcagttga
ctcttttggtgccatggtagtt
gaattctctgtcttcctctatggtcagcggcagtggagagggactcggag
taagggcaggggagataacaccgttggcctccacctgccactggcaccta
ggaagacacggagagagaaacaggcttttcactgccctgtaactaagatt
cctggaaagctacttggatagctgcagctacatgagacacgtggaagctc
acaagatgtatgcagtgcgtagtcagcaaacctacagaggctacgctgaa
tactgcataaaagaatcttgggagtctacctccttcccaacgttattagg
aagcctagtaaaggtgaaagcatcacgtgtttaccacccccatcctatat
gtccaactgttcaccagacatctacccttctttttgggggccttcaattg
tacggggtttaagctggagaaaaacgtatgcagttccaagatgttaacga
aaaggtagcaagtaaaaggcaggggtgccattttaaggccattcctaaga
cacttaggaaccagcgagagggttgggcacagctagctgggaagtgcgct
gagagcagctttccagatgaagtctacttgtgtttgtgggcagaactagc
tccatgcagaccttgttacctttgtagaagtttggatcgcaacaggtcct
gacaagcttcctcttctttggtaatttctggtccgttgtataggattctt
aacatggaacaagctaacacagacagccctaaggccaggtctaccaggaa
gggcaagcctcccgagacatcctccgaggactcctacaaggcaagcaggg
gcaaaccacatgcacgagtcggtggagtctggcagagtactgcaagctag
ctgcaccacactggaccatccccaccaggttttgtagagcagcaccaagt
gcagccgctatggcgaccaggtacagaacccaggaattaggaatcaagaa
tagagcggggccctggagtaccacagaatgagacttttcctatcagaaag
acaagaatcacgtgcagagtgagctgcttgtcctcagctttgaatagtca
aatgcagacttcgactcatcaacgacttgcatctcagaaactctgtgctt
ggaaagcagccatttgcttgattaaacagaagtacagagtctcctggtct
gctctcaaggcagctaagcaagcctggcttaggttcatgtgggtcaagag
ctcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121589750_121590896
seq2: B6Ng01-117L22.b_48_1169

seq1  GAATTCCCAGCCTTCTTGCCTCAAGCTACATAAGTGCTCACACATGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCCTTCTTGCCTCAAGCTACATAAGTGCTCACACATGCTGG  50

seq1  GCAAGCTTGTGTGCTGTACTGGGATGGACCCCAGGAGCCTAGTAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTGTGTGCTGTACTGGGATGGACCCCAGGAGCCTAGTAAATGCT  100

seq1  CACACGCTGGGCTCCAGCCCTGACCTGCAGATTATACAGAGCTTTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTGGGCTCCAGCCCTGACCTGCAGATTATACAGAGCTTTCAATT  150

seq1  TGCTCCCCCAACTTAGTAACTGAATCATGATGATGTAACAGAACATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCCAACTTAGTAACTGAATCATGATGATGTAACAGAACATCTTT  200

seq1  TTTTAAAAAATATATACCAATGCACTTAGAAGCAAAGAGGTACAGACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATATATACCAATGCACTTAGAAGCAAAGAGGTACAGACTCA  250

seq1  TGTAAGTTATAAACATTCCCTTTTTAAATATTATGTATATTAAATAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTATAAACATTCCCTTTTTAAATATTATGTATATTAAATAAAGT  300

seq1  TTGAAGAAAAAAATAAATGCTTGTGTTCAGAAGTTGAGTAAAAGAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAAAAATAAATGCTTGTGTTCAGAAGTTGAGTAAAAGAAATAC  350

seq1  CACGCACTCCACACACTGCTTTTGCAAATAAAGTACTTACTAATATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACTCCACACACTGCTTTTGCAAATAAAGTACTTACTAATATAAAT  400

seq1  GGAAAATTAAAAAAAAAAAAAAAACAAAAAAAAAACCTCTCAACAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTAAAAAAAAAAAAAAAACAAAAAAAAAACCTCTCAACAAATCT  450

seq1  GCAGTGGCACAGCTGGGCACTGGTGGTGCCACTTTTGATCCCGGTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCACAGCTGGGCACTGGTGGTGCCACTTTTGATCCCGGTGCTTG  500

seq1  CGGGGCAGAGGCAGGCAGATCTTTGTGAGTTTGAAGCCAGCCTGGTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCAGAGGCAGGCAGATCTTTGTGAGTTTGAAGCCAGCCTGGTCCAC  550

seq1  AGAGTAAGTTCCAGGATAGCAAGGGCTGTACAGACAAAGAAACTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTTCCAGGATAGCAAGGGCTGTACAGACAAAGAAACTCTGTCT  600

seq1  TGAAATAACAAACAAAAAGCCCTGCAGCACAAGAGGCAGTCTTAATAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACAAACAAAAAGCCCTGCAGCACAAGAGGCAGTCTTAATAAGC  650

seq1  CACTCAGGACTGTCCCTACGGTGCTCTGTCCCGTTCTCTGCTCGCCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGACTGTCCCTACGGTGCTCTGTCCCGTTCTCTGCTCGCCCCTC  700

seq1  TGTGTATCTCTTTCTTGCTGGCCCGCTTCCTCTGTTTCACTCCGCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTCTTTCTTGCTGGCCCGCTTCCTCTGTTTCACTCCGCCTCTT  750

seq1  TCCCCACGGTTCTCCACCCAACTGCCACTTTGTTTTCATTTAGCAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACGGTTCTCCACCCAACTGCCACTTTGTTTTCATTTAGCAATTCT  800

seq1  TTTACTCCCAAAGGGCTTAACTCATCCAAAGTT-GGAAGATGGCTACATT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTACTCCCAAAGGGCTTAACTCATCCAAAGTTGGGAAGATGGCTACATT  850

seq1  TTGAACTAATTCATTATACTAAATGAGTTTTGTCCTGTTGCTTAATTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTAATTCATTATACTAAATGAGTTTTGTCCTGTTGCTTAATTTAA  900

seq1  GAATCCGCTGGGCTTGGGCTGGAGCCATATAGTGCAGTGGTTAAGGACGC  949
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -AATCCGCTGGGCTTGGGCTGGAGCCATATAGTGCAGTGGTTAA-GACGC  948

seq1  AAGTGCTTCTGCAGATGAAAGCTAAGTTCCCATCAGCAACCCTGGGCAGT  999
      |||||| |||||||||||||||||||||||||||||| ||||| ||||||
seq2  AAGTGC-TCTGCAGATGAAAGCTAAGTTCCCATCAGC-ACCCT-GGCAGT  995

seq1  GCACATCCTGGTGCAAGGGGTCTGATTCCTCCTCCTTCTACACATGGACA  1049
      |||||| ||| ||||  ||||||||||    |||  ||||| ||| ||| 
seq2  GCACAT-CTGTTGCA--GGGTCTGATT----CTCTCTCTAC-CAT-GAC-  1035

seq1  CAGGCTCACACACATTGAAATTCAATTTAAAAATAAGCAGGGAGACAGGT  1099
      |||||||   ||||| |||| |||   |||||   ||||| || ||| ||
seq2  CAGGCTCCACCACATGGAAA-TCA---TAAAA--TAGCAGAGA-ACA-GT  1077

seq1  AGTTGACTGTTTTGTGTGCAGTTGACTCTTTTGTGTGCAGTGGTAGTT  1147
      || ||||||||| ||| |||||||||||||||| ||||  ||||||||
seq2  AG-TGACTGTTTGGTG-GCAGTTGACTCTTTTG-GTGCCATGGTAGTT  1122

seq1: chr5_121753100_121754323
seq2: B6Ng01-117L22.g_67_1273 (reverse)

seq1  GCCTGAG--CTTGACCCACCATAGAACCTCTGAGGCAGAGCTGTGGGCTA  48
      |||||||  ||||||||| ||| ||||  || || ||        |||| 
seq2  GCCTGAGCTCTTGACCCA-CAT-GAAC--CTAAGCCA--------GGCTT  38

seq1  GCTTGTGCACCCTGTGA-AGCAGA-CAGAGGACTCTGT-CCTCTGTTTAA  95
      ||||  ||  ||| ||| |||||| |||  |||||||| | |||||||||
seq2  GCTT-AGCTGCCT-TGAGAGCAGACCAGGAGACTCTGTACTTCTGTTTAA  86

seq1  TCAAGCAAAATGGCTGC-TTCTCAGCACAGGGGTATCTTGAGATGC-AGT  143
      |||||| |||||||||| |||  |||||| | || || |||||||| |||
seq2  TCAAGC-AAATGGCTGCTTTCCAAGCACA-GAGTTTC-TGAGATGCAAGT  133

seq1  CGTTGATGGAGTCGAGGTCTGCATTTGACTATTCAAAGCTGAGGACAAGC  193
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CGTTGAT-GAGTCGAAGTCTGCATTTGACTATTCAAAGCTGAGGACAAGC  182

seq1  AGCCTCACTTCTTGCACGTGATTCTTGTCTTTTCTGATAGGAAAAGTTCT  243
      || ||||||   ||||||||||||||||| |||||||||||||||| |||
seq2  AG-CTCACT--CTGCACGTGATTCTTGTC-TTTCTGATAGGAAAAG-TCT  227

seq1  CATTCTGTGGTTACTCCAGGGCCACGCTCTATTCCTGATTCCTAATTCCT  293
      |||||||||| |||||||||||| |||||||||| |||||||||||||||
seq2  CATTCTGTGG-TACTCCAGGGCCCCGCTCTATTCTTGATTCCTAATTCCT  276

seq1  GGGTTCTGTACCTGGTCGCCATAGCGGCTGCACTTGGTGCTGCTCTACAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTACCTGGTCGCCATAGCGGCTGCACTTGGTGCTGCTCTACAA  326

seq1  AACCTGGTGGGGATGGTCCAGTGTGGTGCAGCTAGCTTGCAGTACTCTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGGGGATGGTCCAGTGTGGTGCAGCTAGCTTGCAGTACTCTGC  376

seq1  CAGACTCCACCGACTCGTGCATGTGGTTTGCCCCTGCTTGCCTTGTAGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCACCGACTCGTGCATGTGGTTTGCCCCTGCTTGCCTTGTAGGA  426

seq1  GTCCTCGGAGGATGTCTCGGGAGGCTTGCCCTTCCTGGTAGACCTGGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGAGGATGTCTCGGGAGGCTTGCCCTTCCTGGTAGACCTGGCCT  476

seq1  TAGGGCTGTCTGTGTTAGCTTGTTCCATGTTAAGAATCCTATACAACGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGTCTGTGTTAGCTTGTTCCATGTTAAGAATCCTATACAACGGA  526

seq1  CCAGAAATTACCAAAGAAGAGGAAGCTTGTCAGGACCTGTTGCGATCCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTACCAAAGAAGAGGAAGCTTGTCAGGACCTGTTGCGATCCAA  576

seq1  ACTTCTACAAAGGTAACAAGGTCTGCATGGAGCTAGTTCTGCCCACAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACAAAGGTAACAAGGTCTGCATGGAGCTAGTTCTGCCCACAAAC  626

seq1  ACAAGTAGACTTCATCTGGAAAGCTGCTCTCAGCGCACTTCCCAGCTAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGACTTCATCTGGAAAGCTGCTCTCAGCGCACTTCCCAGCTAGC  676

seq1  TGTGCCCAACCCTCTCGCTGGTTCCTAAGTGTCTTAGGAATGGCCTTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAACCCTCTCGCTGGTTCCTAAGTGTCTTAGGAATGGCCTTAAA  726

seq1  ATGGCACCCCTGCCTTTTACTTGCTACCTTTTCGTTAACATCTTGGAACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCCCTGCCTTTTACTTGCTACCTTTTCGTTAACATCTTGGAACT  776

seq1  GCATACGTTTTTCTCCAGCTTAAACCCCGTACAATTGAAGGCCCCCAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACGTTTTTCTCCAGCTTAAACCCCGTACAATTGAAGGCCCCCAAAA  826

seq1  AGAAGGGTAGATGTCTGGTGAACAGTTGGACATATAGGATGGGGGTGGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTAGATGTCTGGTGAACAGTTGGACATATAGGATGGGGGTGGTA  876

seq1  AACACGTGATGCTTTCACCTTTACTAGGCTTCCTAATAACGTTGGGAAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGATGCTTTCACCTTTACTAGGCTTCCTAATAACGTTGGGAAGG  926

seq1  AGGTAGACTCCCAAGATTCTTTTATGCAGTATTCAGCGTAGCCTCTGTAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGACTCCCAAGATTCTTTTATGCAGTATTCAGCGTAGCCTCTGTAG  976

seq1  GTTTGCTGACTACGCACTGCATACATCTTGTGAGCTTCCACGTGTCTCAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGACTACGCACTGCATACATCTTGTGAGCTTCCACGTGTCTCAT  1026

seq1  GTAGCTGCAGCTATCCAAGTAGCTTTCCAGGAATCTTAGTTACAGGGCAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCAGCTATCCAAGTAGCTTTCCAGGAATCTTAGTTACAGGGCAG  1076

seq1  TGAAAAGCCTGTTTCTCTCTCCGTGTCTTCCTAGGTGCCAGTGGCAGGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCTGTTTCTCTCTCCGTGTCTTCCTAGGTGCCAGTGGCAGGTG  1126

seq1  GAGGCCAACGGTGTTATCTCCCCTGCCCTTACTCCGAGTCCCTCTCCACT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAACGGTGTTATCTCCCCTGCCCTTACTCCGAGTCCCTCTCCACT  1176

seq1  GCCGCTGACCATAGAGGAAGACAGAGAATTC  1224
      |||||||||||||||||||||||||||||||
seq2  GCCGCTGACCATAGAGGAAGACAGAGAATTC  1207