BAC Information

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BAC

Clone NameB6Ng01-117N23
Chromosome5 (Build37)
Map Location 142,361,293 - 142,540,663
singlet/doubletdoublet
Overlap geneSdk1
Upstream geneCard11, LOC623466
Downstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N23.bB6Ng01-117N23.g
ACCDH922497DH922498
length9431,135
definitionDH922497|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N23, 5' end.DH922498|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,539,294 - 142,540,663)(142,361,293 - 142,362,444)
sequence
gaattcacctctagtgtgtatgtattgcaagaggcttcatataaaatggc
ttgttaggtaaacagataaccctgtgattcacttttgtggctatgtgcgg
cacacactgaaaaaaacgaagcaccacccgtggccttccatctatcagtt
ccatccaatcgagtcccaggatcctgctgcacacatggggttggggtgag
agacacatagcattgccttgtgccctggtgtctcccaggcacaagtcact
tcaacaaggatggctactgacactgtgggtaaccttggtgtctgtaagcg
ttgcctctgaagatactggggctacacagtatctccatctccacggttcc
ttagttaccaggagaccagtgtggaacagattcgtgttttattttattag
cccataacactctctaaaacagcccctttttaagaaaatggctactatta
tgcacaaataagcacttagtgggttcccccccacccccatctctgctttc
cattttcagaatggaaacagttttatctatacccaaagtgttacggagag
catcttcattaccgaaaaatcccgccctgagcagcctttgcaggagacag
gcggcaatttgggctattagagtgcagcaaatggccatgtgcggcagggg
ccgagggaaaggagcaaggggtagggagagcgtggccaaggacaacaggt
actggagtgaaaacgtgggaagagctgttctgctccagctgcagccagag
gttactaattaagcaaagcattatggagccagaaatacccacaaaagctg
ctgcttcttttttaaacccacacctgagcatcaacacaacaagggtctta
taaggagcttttccgatagcaagcatctttcatcccataattcactgagg
agaactgaagccaaaaccttggtgcagaggggtgggggtggga
gaattcctccctgagtgtttcctctgatactctgtcctgtgctgagaacc
taacttaggcagagacactccaggctaatcctgctctggccccagcacag
gtaccaggctgccccacatgtcatgggttcacaggtgtgccatgctgcag
gtgaacagcgccgggtcagcctgtatccgtcctccatcctccttcatgat
gccactgtgacctctgctgaggctgacaaggtcagtaggcagctcaggaa
catggctgttggatccagactgaggcctgacagatacaagtccttatgaa
catacgggacctccatcaagtggaattatttccaaggatgaacgaagatg
cattctcttagtaagaatattttaaaacttaactacttccctggatgctc
tgtgattaaaccaccctctctcccttgcctggcctacaattttgtcagcc
catctgcagggcttgctttagtgagggccctcttcacgccttaaacagcc
cctttcagataaaagttaaacaaaggaaggcagcacacacagccttgaac
acacatcacaagcaataagaattattatttctccacaacctcccaccctc
tggagtaagcagaaggggccaaaggctaggttcgtttaaaatgaacaaaa
atagtgcaaatattgatgtgcaaaagactgtctgaaaggactgttacctt
tttggtgatggtgatgtggaatcctgtttatttgcagggacaaaaaaaag
ggaaaaaagaaaaagagtcagtgtgtgaatagcctcctgcgtgatgctgc
atcagcagatggctctgctctttcccctggaatgtgcatgctccgcgctc
tgttcctgggccagcagagctttagtaaagagaggatctgtgcattcaaa
gggagaaaacaaatgcagagggttctgcccaccactctctgtaaaggctt
tctgggttggggaatccgcgtgcgtagggaaaaactctgctacagcagac
gcttgcaagcagcgctgtcctcatctgtagactttgtgtctgagtgctga
gatccactcaactcccgagtcaagagcactgaaccagtgcagaaacgaga
gaaccaaccaggtggtcaggttaacacttcctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142539294_142540663
seq2: B6Ng01-117N23.b_50_992 (reverse)

seq1  TCCCACACCTGGGATTAAAACAAAAACATAGTCTTATGATATTATGTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTAAGAAAGCAAAATTCCAGAGTTCTCACTCCAGGTCCTCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTGCACAGAAAGCACTTTATCCACTGAGCCATATCCCAGCGCCCCTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAGTCTCTTCATTCCTGCCTCAGGATGGTTACATGAGGGACAGGTAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCACAGAGGACACCTAGGCTGTGGAGAGGCTGGCTGATCAGGGAGCCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGATCCACCTGCTCCCGTTTCCCTAGTGCTAGGACTATGATCGATCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TATGCTACCAGGCTCTGCTTTCTTTTATATGTGTTCTGGGGATTGGACTC  350
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTCTTCTCCCTCCCCTGGTAAGCACCTTACCTCTAACCATCTTCCCAG  400
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCCTCCCTGCCCTCCCCCTTCCCCCTCCCA-CCCCACCCCTCTGCACC  449
                                 ||||| |||||||||||||||||
seq2  ---------------------------TCCCACCCCCACCCCTCTGCACC  23

seq1  AAGGTTTTTGGCTTCAGTTCTCCTCAGTGAATTATGGGATGAAAGATGCT  499
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGG-TTTTGGCTTCAGTTCTCCTCAGTGAATTATGGGATGAAAGATGCT  72

seq1  TGCTATCGGAAAAGCTCCTTATAAGACCCTTGTTGTGTTGATGCTCAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCGGAAAAGCTCCTTATAAGACCCTTGTTGTGTTGATGCTCAGGT  122

seq1  GTGGGTTTAAAAAAGAAGCAGCAGCTTTTGTGGGTATTTCTGGCTCCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTAAAAAAGAAGCAGCAGCTTTTGTGGGTATTTCTGGCTCCATA  172

seq1  ATGCTTTGCTTAATTAGTAACCTCTGGCTGCAGCTGGAGCAGAACAGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGCTTAATTAGTAACCTCTGGCTGCAGCTGGAGCAGAACAGCTC  222

seq1  TTCCCACGTTTTCACTCCAGTACCTGTTGTCCTTGGCCACGCTCTCCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACGTTTTCACTCCAGTACCTGTTGTCCTTGGCCACGCTCTCCCTA  272

seq1  CCCCTTGCTCCTTTCCCTCGGCCCCTGCCGCACATGGCCATTTGCTGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCTCCTTTCCCTCGGCCCCTGCCGCACATGGCCATTTGCTGCAC  322

seq1  TCTAATAGCCCAAATTGCCGCCTGTCTCCTGCAAAGGCTGCTCAGGGCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGCCCAAATTGCCGCCTGTCTCCTGCAAAGGCTGCTCAGGGCGG  372

seq1  GATTTTTCGGTAATGAAGATGCTCTCCGTAACACTTTGGGTATAGATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCGGTAATGAAGATGCTCTCCGTAACACTTTGGGTATAGATAAA  422

seq1  ACTGTTTCCATTCTGAAAATGGAAAGCAGAGATGGGGGTGGGGGGGAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCCATTCTGAAAATGGAAAGCAGAGATGGGGGTGGGGGGGAACC  472

seq1  CACTAAGTGCTTATTTGTGCATAATAGTAGCCATTTTCTTAAAAAGGGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTGCTTATTTGTGCATAATAGTAGCCATTTTCTTAAAAAGGGGC  522

seq1  TGTTTTAGAGAGTGTTATGGGCTAATAAAATAAAACACGAATCTGTTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAGAGTGTTATGGGCTAATAAAATAAAACACGAATCTGTTCCA  572

seq1  CACTGGTCTCCTGGTAACTAAGGAACCGTGGAGATGGAGATACTGTGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTCCTGGTAACTAAGGAACCGTGGAGATGGAGATACTGTGTAG  622

seq1  CCCCAGTATCTTCAGAGGCAACGCTTACAGACACCAAGGTTACCCACAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTATCTTCAGAGGCAACGCTTACAGACACCAAGGTTACCCACAGT  672

seq1  GTCAGTAGCCATCCTTGTTGAAGTGACTTGTGCCTGGGAGACACCAGGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGCCATCCTTGTTGAAGTGACTTGTGCCTGGGAGACACCAGGGC  722

seq1  ACAAGGCAATGCTATGTGTCTCTCACCCCAACCCCATGTGTGCAGCAGGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAATGCTATGTGTCTCTCACCCCAACCCCATGTGTGCAGCAGGA  772

seq1  TCCTGGGACTCGATTGGATGGAACTGATAGATGGAAGGCCACGGGTGGTG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACTCGATTGGATGGAACTGATAGATGGAAGGCCACGGGTGGTG  822

seq1  CTTCGTTTTTTTCAGTGTGTGCCGCACATAGCCACAAAAGTGAATCACAG  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTTTTTTCAGTGTGTGCCGCACATAGCCACAAAAGTGAATCACAG  872

seq1  GGTTATCTGTTTACCTAACAAGCCATTTTATATGAAGCCTCTTGCAATAC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTGTTTACCTAACAAGCCATTTTATATGAAGCCTCTTGCAATAC  922

seq1  ATACACACTAGAGGTGAATTC  1370
      |||||||||||||||||||||
seq2  ATACACACTAGAGGTGAATTC  943

seq1: chr5_142361293_142362444
seq2: B6Ng01-117N23.g_65_1199

seq1  GAATTCCTCCCTGAGTGTTTCCTCTGATACTCTGTCCTGTGCTGAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTGAGTGTTTCCTCTGATACTCTGTCCTGTGCTGAGAACC  50

seq1  TAACTTAGGCAGAGACACTCCAGGCTAATCCTGCTCTGGCCCCAGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGGCAGAGACACTCCAGGCTAATCCTGCTCTGGCCCCAGCACAG  100

seq1  GTACCAGGCTGCCCCACATGTCATGGGTTCACAGGTGTGCCATGCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGCTGCCCCACATGTCATGGGTTCACAGGTGTGCCATGCTGCAG  150

seq1  GTGAACAGCGCCGGGTCAGCCTGTATCCGTCCTCCATCCTCCTTCATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGCGCCGGGTCAGCCTGTATCCGTCCTCCATCCTCCTTCATGAT  200

seq1  GCCACTGTGACCTCTGCTGAGGCTGACAAGGTCAGTAGGCAGCTCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTGACCTCTGCTGAGGCTGACAAGGTCAGTAGGCAGCTCAGGAA  250

seq1  CATGGCTGTTGGATCCAGACTGAGGCCTGACAGATACAAGTCCTTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTTGGATCCAGACTGAGGCCTGACAGATACAAGTCCTTATGAA  300

seq1  CATACGGGACCTCCATCAAGTGGAATTATTTCCAAGGATGAACGAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGGGACCTCCATCAAGTGGAATTATTTCCAAGGATGAACGAAGATG  350

seq1  CATTCTCTTAGTAAGAATATTTTAAAACTTAACTACTTCCCTGGATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTTAGTAAGAATATTTTAAAACTTAACTACTTCCCTGGATGCTC  400

seq1  TGTGATTAAACCACCCTCTCTCCCTTGCCTGGCCTACAATTTTGTCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAAACCACCCTCTCTCCCTTGCCTGGCCTACAATTTTGTCAGCC  450

seq1  CATCTGCAGGGCTTGCTTTAGTGAGGGCCCTCTTCACGCCTTAAACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGGGCTTGCTTTAGTGAGGGCCCTCTTCACGCCTTAAACAGCC  500

seq1  CCTTTCAGATAAAAGTTAAACAAAGGAAGGCAGCACACACAGCCTTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGATAAAAGTTAAACAAAGGAAGGCAGCACACACAGCCTTGAAC  550

seq1  ACACATCACAAGCAATAAGAATTATTATTTCTCCACAACCTCCCACCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCACAAGCAATAAGAATTATTATTTCTCCACAACCTCCCACCCTC  600

seq1  TGGAGTAAGCAGAAGGGGCCAAAGGCTAGGTTCGTTTAAAATGAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGCAGAAGGGGCCAAAGGCTAGGTTCGTTTAAAATGAACAAAA  650

seq1  ATAGTGCAAATATTGATGTGCAAAAGACTGTCTGAAAGGACTGTTACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAAATATTGATGTGCAAAAGACTGTCTGAAAGGACTGTTACCTT  700

seq1  TTTGGTGATGGTGATGTGGAATCCTGTTTATTTGCAGGGACAAAAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGATGGTGATGTGGAATCCTGTTTATTTGCAGGGACAAAAAAAAG  750

seq1  GGAAAAAAGAAAAAGAGTCAGTGTGTGAATAGCCTCCTGCGTGATGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGAAAAAGAGTCAGTGTGTGAATAGCCTCCTGCGTGATGCTGC  800

seq1  ATCAGCAGATGGCTCTGCTCTTTCCCCTGGAATGTGCATGCTCCGCGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGATGGCTCTGCTCTTTCCCCTGGAATGTGCATGCTCCGCGCTC  850

seq1  TGTTCCTGGGCCAGCAGAGCTTTAGTAAAGAGAGGATCTGTGCATTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGGCCAGCAGAGCTTTAGTAAAGAGAGGATCTGTGCATTCAAA  900

seq1  GGGAGAAAACAAATGCAGAGGGTTCTGCCCACCACTCTCTGTAAAGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAACAAATGCAGAGGGTTCTGCCCACCACTCTCTGTAAAGGCTT  950

seq1  TCTGGGTTGGGGAATCCGCGTGCGTAGGGAAAAACGGCTGCCTACAGCAG  1000
      |||||||||||||||||||||||||||||||||||  ||| |||||||||
seq2  TCTGGGTTGGGGAATCCGCGTGCGTAGGGAAAAAC-TCTG-CTACAGCAG  998

seq1  AACGCTGCAAAGCAGGCCGCTGGCCCTCATCCGTAGACTCTGTGTCCTGA  1050
       |||||   ||||||  |||| | ||||||| ||||||| ||||| ||||
seq2  -ACGCTTGCAAGCAG--CGCT-GTCCTCATCTGTAGACTTTGTGT-CTGA  1043

seq1  GGGTGCTGAGATCCACTCACACTCCCGAGGTCACAGAGCACTGAGCAGGT  1100
        ||||||||||||||||| |||||||| |||| |||||||||| |  ||
seq2  --GTGCTGAGATCCACTCA-ACTCCCGA-GTCA-AGAGCACTGAACCAGT  1088

seq1  GCGAGACACGAGAGACACAACACAGGTGTGTCAGGTTAGACACCTCCCTG  1150
      || ||| ||||||||  |||| |||||| ||||||||| ||| || ||||
seq2  GC-AGAAACGAGAGAACCAAC-CAGGTG-GTCAGGTTA-ACA-CTTCCTG  1133

seq1  CT  1152
      ||
seq2  CT  1135