BAC Information

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BAC

Clone NameB6Ng01-119M03
Chromosome5 (Build37)
Map Location 134,384,803 - 134,549,845
singlet/doubletdoublet
Overlap geneLOC100039750
Upstream geneLOC100039731, LOC666038
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M03.bB6Ng01-119M03.g
ACCDH923885DH923886
length9671,073
definitionDH923885|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M03, 5' end.DH923886|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,548,875 - 134,549,845)(134,384,803 - 134,385,888)
sequence
gaattcagcgttgctctatcctacactgggagagggatggttgggtccag
ttctgtctaggaccttggctgtgacattgaggcctctgggctcagtgcca
gcctcctgggtggtgagcttggagcagcctgttagccaccagcccccgtc
tgcccgtgcgcctgctccaagagcagaccccaactgagccctggcggccc
ggtttcctgagccggcgcctggcattgctctcctggaccaagctcgcaac
atctttctacaataaaaccaggatggaagttaattgcctctatcactctg
cgatggaatggccccataaaatctttatgaggtgcaactgcgggggcttg
aacgggtggccggctgcttggatggaggctacagctaacgtctgggggag
gccccagctaggaggggtgtgaagatctgctgatgctgatcgttccggtc
tgatttgttttggatatgttccaaagcatttacaaagcacaattaactgt
tcatggagccgcttgctggtcgctactgtgattgtgaaatgtcctcagtt
tctcccttcccttctgtctctcgttcccgccccctttcttctttccttcc
tcttttccttccttccatctcccccttcttcccaacactgacctctggcc
tctatacacaggagaacaaatgtgcatgtgtatgcaaatgaacacaccct
tacacagatacacagacacagacagacagacacaataccatgtactcagt
aacgtcatccccccttttcactgagtccataaagctctcaccccaccacc
agggagtatcagcttctcaactgccatggatggtgggaaccctctacaag
acaaggtcccccctcccctagcccccctgcctcctgccttgcttattaac
ggcacattctggacacaaactcacatcttgggctcataagcaaacactct
gccgactacttatctcc
gaattcatgaatggattctaagggatatgggtgaggatgtcgggtcagca
aaaacagttctcacctcaaggaggataagagattgtgcactgtggggtat
ggagagctagttcagctcttggggctcttgcaagggacccaagtctggtt
ctcagcacccatatcaggtgattcataaccacccgcacctccagctctag
aggggacttcgatgccttcttctaactcccacaggtacctatgcacacac
acacacacacacacacacacacacacacacaattaactaattataaaact
atgcccactctggtggagcacacctttaatctttgcacttgggaggcaga
ggcaggtgaatctctatgagtttgacaccagcctggtctacaggctgacc
aggtttccaccatgaggccttgtctcaaagtaacaacgacaatcataata
ataggagggcaatcataaaagttcatgatattcactacagcaatgtcaca
atggaacccattcttttacacaagtgatatccgtgaatttaaaagtggtc
aagaagggtggctatgcctcagacccagcattcctctccttcttctcatt
actaagacaaaacatctgacaaaaaatatactctgtagtttttctacctc
ttgccggaatggttcttccttccagagtcttagaatacatctttcacagg
actcaatctgctcaggatccctccgcttttctcagacgatatcatcacta
aacgcaactgcagcaatttcaacgctgtttttatgaaacagagttgaaaa
caagaaagtccatgtcagattgatccccacacatgaagcctgcgagtctc
ctttttcaaatgggcaagaatgttgcggagttaaggccgggactaggaag
acctattgtctgactcaagtcagagtcttggcacctctgagagacccagt
gtacccggtgtgactgtgctctgactttcgatttctggctgtgtgatcag
atctgacaagaaacaatttcagaagaaggatgttgttggctcgagaatgg
agcattaattccactttggccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134548875_134549845
seq2: B6Ng01-119M03.b_46_1012 (reverse)

seq1  GGAGATAAGTAAGTCGGCAGAGTGTTTGCCTTATGAGCCACAAGATTTGA  50
      |||||||||| ||||||||||||||||| |||||||||| |||||| |||
seq2  GGAGATAAGT-AGTCGGCAGAGTGTTTG-CTTATGAGCC-CAAGATGTGA  47

seq1  GTTTTGTCTCCAGAATCTGCCCTTAATAAGCCAGGCAGGAGGCAGGGGGG  100
      | ||||| |||||||| |||| ||||||||| ||||||||||||||||||
seq2  G-TTTGTGTCCAGAATGTGCCGTTAATAAGCAAGGCAGGAGGCAGGGGGG  96

seq1  CTAGGGGGAGGGGTGAACTTGTCTTGTGGA-GGTTCCCAACCTCCATGGC  149
      ||| ||||||||| || |||||||||| || |||||||| | ||||||||
seq2  CTA-GGGGAGGGGGGACCTTGTCTTGTAGAGGGTTCCCACCATCCATGGC  145

seq1  CGCTGAGAAGCTGATGCTCCCTGGTGGTAGGGTGAGAGCTTTATGGACTC  199
       | |||||||||||| |||||||||||| |||||||||||||||||||||
seq2  AGTTGAGAAGCTGATACTCCCTGGTGGTGGGGTGAGAGCTTTATGGACTC  195

seq1  AGTGAAAAGGGGGGATGACGTTACTGAGTACATGGTATTGTGTCTGTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGGGGGGATGACGTTACTGAGTACATGGTATTGTGTCTGTCTG  245

seq1  TCTGTGTCTGTGTATCTGTGTATGCGTGTGTTCATTTGCATACACATGCA  299
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  TCTGTGTCTGTGTATCTGTGTAAGGGTGTGTTCATTTGCATACACATGCA  295

seq1  CATTTGTTCTCCTGTGTATAGAGGCCAGAGGTCAGTGTTGGGAAGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCTCCTGTGTATAGAGGCCAGAGGTCAGTGTTGGGAAGAAGGG  345

seq1  GGAGATGGAAGGAAGGAAAAGAGGAAGGAAAGAAGAAAGGGGGCGGGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAAGGAAGGAAAAGAGGAAGGAAAGAAGAAAGGGGGCGGGAAC  395

seq1  GAGAGACAGAAGGGAAGGGAGAAACTGAGGACATTTCACAAACACAGTAG  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAGACAGAAGGGAAGGGAGAAACTGAGGACATTTCACAATCACAGTAG  445

seq1  CGACCAGCAAGCGGCCCCATGAACAGTTAACTCTGCCTTCTAAATGCTTT  499
      ||||||||||||||| |||||||||||||| | ||| || ||||||||||
seq2  CGACCAGCAAGCGGCTCCATGAACAGTTAATTGTGCTTTGTAAATGCTTT  495

seq1  GGAACATCTCCAAAACAAATCAGACCCGAACGCTCAGCATCAGCAGATCT  549
      ||||||| |||||||||||||||||| ||||| |||||||||||||||||
seq2  GGAACATATCCAAAACAAATCAGACCGGAACGATCAGCATCAGCAGATCT  545

seq1  TCACACACCTCCTAGCTGGGGCCTCCCCCAGACGTTAGCTGTAGCCTCCA  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCCTCCTAGCTGGGGCCTCCCCCAGACGTTAGCTGTAGCCTCCA  595

seq1  GCCAAGCAGCCGGCCACCCGTTCAAGCCCCCGCAGTTGCACCTCATAAAG  649
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAGCCGGCCACCCGTTCAAGCCCCCGCAGTTGCACCTCATAAAG  645

seq1  ATTTTATGGGGCCATTCCATCGCAGAGTGATAGAGGCAATTAACTTCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGGGCCATTCCATCGCAGAGTGATAGAGGCAATTAACTTCCAT  695

seq1  CCTGGTTTTATTGTAGAAAGATGTTGCGAGCTTGGTCCAGGAGAGCAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTTATTGTAGAAAGATGTTGCGAGCTTGGTCCAGGAGAGCAATG  745

seq1  CCAGGCGCCGGCTCAGGAAACCGGGCCGCCAGGGCTCAGTTGGGGTCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGCCGGCTCAGGAAACCGGGCCGCCAGGGCTCAGTTGGGGTCTGC  795

seq1  TCTTGGAGCAGGTGCACGGGCAGATGGGGGCTCGTGGCTAACAGGCTGCT  849
      |||||||||||| ||||||||||| ||||||| |||||||||||||||||
seq2  TCTTGGAGCAGGCGCACGGGCAGACGGGGGCTGGTGGCTAACAGGCTGCT  845

seq1  CCAAGCTCACCACCCAGGAGGCTGGCACTGAGCCCCGAGGCCTCACTGTC  899
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CCAAGCTCACCACCCAGGAGGCTGGCACTGAGCCCAGAGGCCTCAATGTC  895

seq1  ACAGCCAAGGTCCTAGACAGAACTGGACCCAACCATCCCTCTCCCAGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGTCCTAGACAGAACTGGACCCAACCATCCCTCTCCCAGTGT  945

seq1  AGGATAGAGCAACGCTGAATTC  971
      ||||||||||||||||||||||
seq2  AGGATAGAGCAACGCTGAATTC  967

seq1: chr5_134384803_134385888
seq2: B6Ng01-119M03.g_68_1140

seq1  GAATTCATGAATGGATTCTAAGGGATATGGGTGAGGATGTCGGGTCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATGGATTCTAAGGGATATGGGTGAGGATGTCGGGTCAGCA  50

seq1  AAAACAGTTCTCACCTCAAGGAGGATAAGAGATTGTGCACTGTGGGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTCTCACCTCAAGGAGGATAAGAGATTGTGCACTGTGGGGTAT  100

seq1  GGAGAGCTAGTTCAGCTCTTGGGGCTCTTGCAAGGGACCCAAGTCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTAGTTCAGCTCTTGGGGCTCTTGCAAGGGACCCAAGTCTGGTT  150

seq1  CTCAGCACCCATATCAGGTGATTCATAACCACCCGCACCTCCAGCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACCCATATCAGGTGATTCATAACCACCCGCACCTCCAGCTCTAG  200

seq1  AGGGGACTTCGATGCCTTCTTCTAACTCCCACAGGTACCTATGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTTCGATGCCTTCTTCTAACTCCCACAGGTACCTATGCACACAC  250

seq1  ACACACACACACACACACACACACACACACAATTAACTAATTATAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAATTAACTAATTATAAAACT  300

seq1  ATGCCCACTCTGGTGGAGCACACCTTTAATCTTTGCACTTGGGAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACTCTGGTGGAGCACACCTTTAATCTTTGCACTTGGGAGGCAGA  350

seq1  GGCAGGTGAATCTCTATGAGTTTGACACCAGCCTGGTCTACAGGCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGAATCTCTATGAGTTTGACACCAGCCTGGTCTACAGGCTGACC  400

seq1  AGGTTTCCACCATGAGGCCTTGTCTCAAAGTAACAACGACAATCATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCACCATGAGGCCTTGTCTCAAAGTAACAACGACAATCATAATA  450

seq1  ATAGGAGGGCAATCATAAAAGTTCATGATATTCACTACAGCAATGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGGCAATCATAAAAGTTCATGATATTCACTACAGCAATGTCACA  500

seq1  ATGGAACCCATTCTTTTACACAAGTGATATCCGTGAATTTAAAAGTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCCATTCTTTTACACAAGTGATATCCGTGAATTTAAAAGTGGTC  550

seq1  AAGAAGGGTGGCTATGCCTCAGACCCAGCATTCCTCTCCTTCTTCTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGTGGCTATGCCTCAGACCCAGCATTCCTCTCCTTCTTCTCATT  600

seq1  ACTAAGACAAAACATCTGACAAAAAATATACTCTGTAGTTTTTCTACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACAAAACATCTGACAAAAAATATACTCTGTAGTTTTTCTACCTC  650

seq1  TTGCCGGAATGGTTCTTCCTTCCAGAGTCTTAGAATACATCTTTCACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGGAATGGTTCTTCCTTCCAGAGTCTTAGAATACATCTTTCACAGG  700

seq1  ACTCAATCTGCTCAGGATCCCTCCGCTTTTCTCAGACGATATCATCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCTGCTCAGGATCCCTCCGCTTTTCTCAGACGATATCATCACTA  750

seq1  AACGCAACTGCAGCAA-TTCAACGCTGTTTTTATGAAACAGAGTTGAAAA  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACGCAACTGCAGCAATTTCAACGCTGTTTTTATGAAACAGAGTTGAAAA  800

seq1  CAAGAAAGTCCATGTCAGATTGATCCCCACACATGAAGCCTGCGAAGTCT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGAAAGTCCATGTCAGATTGATCCCCACACATGAAGCCTGCG-AGTCT  849

seq1  CCTTTTTACAAATGGGCAAGAATGTTGCGGAGTTAAGGCCGTGACTAGGA  899
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTTTT-CAAATGGGCAAGAATGTTGCGGAGTTAAGGCCGGGACTAGGA  898

seq1  AGACCTATTGTCTGACTCAAAGTCAGAGTCCTTGGCACCTCTGAGATGAC  949
      |||||||||||||||||| |||||||||| |||||||||||||||| |||
seq2  AGACCTATTGTCTGACTC-AAGTCAGAGT-CTTGGCACCTCTGAGA-GAC  945

seq1  CCAGTGTCACCCGGTGTGACATGTGCTCTGTACTTATCGATTTTCTGGCT  999
      ||||||| |||||||||||| ||||||||| |||| |||| |||||||||
seq2  CCAGTGT-ACCCGGTGTGAC-TGTGCTCTG-ACTT-TCGA-TTTCTGGCT  990

seq1  GTTGTGATCAAGAACCTGACAAGAAACAATTTCAAGAAGAAAGGATG-TG  1048
      | ||||||||   | |||||||||||||||||| ||||| ||||||| ||
seq2  G-TGTGATCA--GATCTGACAAGAAACAATTTC-AGAAG-AAGGATGTTG  1035

seq1  TTGGCTCGAAGTAT-GAGCATTCAATCCATCTTGGCCAA  1086
      |||||||| || || ||||||| | ||||  ||||||||
seq2  TTGGCTCG-AGAATGGAGCATTAATTCCACTTTGGCCAA  1073