BAC Information

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BAC

Clone NameB6Ng01-120I02
Chromosome5 (Build37)
Map Location 137,428,805 - 137,570,997
singlet/doubletdoublet
Overlap geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1
Upstream geneSrcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5
Downstream geneTrim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I02.bB6Ng01-120I02.g
ACCDH924433DH924434
length545940
definitionDH924433|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I02, 5' end.DH924434|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,570,465 - 137,570,997)(137,428,805 - 137,429,760)
sequence
tactcacctcactattcatggtggtgtgacctctgtatggagcatggaat
ggttgagttctgaacaacttcaacaacaactttcttttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttctttcttcttctccttctccttctcctt
ctccttcttcttcttcatctccctaccccttacgttccctctccctcttc
ctctcctcctctcctcctcctccttttccccgtccgcctttttccacctc
ctcctcttcttcccctcttcttctgtttttgtttttagtttgtttggttt
ttttgagacagggtttccctgtgtagctctggctgtacaagaactcactc
tgtagaccagactgacctcgaactcagatccacctgcctctgcctccaag
tgctgggatttaaaggtgtccaccaccatctctgaaaatctgtgctacag
tggaaaatgaacacggttagacatatcatgagatttcagagacat
cgttataaggcttgacggcaagcacctgtaccctctgagccatttcaggg
gtcggtaagaaacttttgcaaaatctgaggaaaggaaaaagtccctttcc
aacacccggtagcgccctgccctcctagtgtcgccccgccccttggggag
cagcgcgcgttcactggccagtgaggtcctctcgctccgcccttggtctc
gctcggccccgcctccctttggacagctcctgctgcgcagactctgctct
tcccaatggagcagctccggtcctccagagcaccgagccgacttcctaga
gacgtccccaaggaggcaccacccggaagttcaggcttcccagagggacc
ctagcgtgctttctgtaacgcctgccgttactccttctaccccgaggctg
tcctaagagggctctcctttgtcagaaaagatgaatgaagcatagtagct
gtagcatgaagggttacagtgttgcgtgttaagggatgaacccccaaagt
gcctgtagaaaacagctctgggcctaatgtcctggctgcggtgcaggatg
aaagactccggttgatagaccgctacggagaaaaaccaaagaaggctgtc
atgagaacatcctcgggtgcaggggtccatggatgcccagagacgaagct
gcaagggtaagtggggtcgatcctcagggttgcagttttcaaacactatc
ttgtgtagctttgatttgttttttctctttttttttcttttttttttttt
tagggacaagatctggcctttaccgtagcccagccctgtactcacgagtc
cccctgcctcagttcccaagtgctagggtcatagcatgcctcaccactac
ttctttttactggaacatcaccgctctgatggtgccatgaacgacctgtg
ccaaactgggtttggttggactgtgttgatgctggagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137570465_137570997
seq2: B6Ng01-120I02.b_59_595 (reverse)

seq1  GAAATCTCATGATATGTCTAACCGTGTTCATTTTCCAACTGTAGCACAGA  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAATCTCATGATATGTCTAACCGTGTTCATTTTCC-ACTGTAGCACAGA  49

seq1  TTTTTCAGAGATGGTGGTGGACACCTTTAAATCCCAGCACTTGGAGGCAG  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTCAGAGATGGTGGTGGACACCTTTAAATCCCAGCACTTGGAGGCAG  98

seq1  AGGCAGGTGGATCTGAGTTCGAGGTCAGTCTGGTCTACAGAGTGAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATCTGAGTTCGAGGTCAGTCTGGTCTACAGAGTGAGTTCT  148

seq1  TGTACAGCCAGAGCTACACAGGGAAACCCTGTCTCAAAAAAACCAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCCAGAGCTACACAGGGAAACCCTGTCTCAAAAAAACCAAACAA  198

seq1  ACTAAAAACAAAAACAGAAGAAGAGGGGAAGAAGAGGAGGAGGTGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACAAAAACAGAAGAAGAGGGGAAGAAGAGGAGGAGGTGGAAAA  248

seq1  AGGCGGACGGGGAAAAGGAGGAGGAGGAGAGGAGGAGAGGAAGAGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGACGGGGAAAAGGAGGAGGAGGAGAGGAGGAGAGGAAGAGGGAGA  298

seq1  GGGAACGTAAGGGGTAGGGAGATGAAGAAGAAGAAGGAGAAGGAGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGTAAGGGGTAGGGAGATGAAGAAGAAGAAGGAGAAGGAGAAGGA  348

seq1  GAAGGAGAAGAAGA------AAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  394
      ||||||||||||||      ||||||||||||||||||||||||||||||
seq2  GAAGGAGAAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  398

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  448

seq1  GAAAAGAAAGTTGTTGTTGAAGTTGTTCAGAACTCAACCATTCCATGCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGTTGTTGTTGAAGTTGTTCAGAACTCAACCATTCCATGCTC  498

seq1  CATACAGAGGTCACACCACCATGAATAGTGAGGTGAGTA  533
      |||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGGTCACACCACCATGAATAGTGAGGTGAGTA  537

seq1: chr5_137428805_137429760
seq2: B6Ng01-120I02.g_73_1012

seq1  CGTTATAAGGCTTGACGGCAAGCACCTGTACCCTCTGAGCCATTTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATAAGGCTTGACGGCAAGCACCTGTACCCTCTGAGCCATTTCAGGG  50

seq1  GTCGGTAAGAAACTTTTGCAAAATCTGAGGAAAGGAAAAAGTCCCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAAGAAACTTTTGCAAAATCTGAGGAAAGGAAAAAGTCCCTTTCC  100

seq1  AACACCCGGTAGCGCCCTGCCCTCCTAGTGTCGCCCCGCCCCTTGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCGGTAGCGCCCTGCCCTCCTAGTGTCGCCCCGCCCCTTGGGGAG  150

seq1  CAGCGCGCGTTCACTGGCCAGTGAGGTCCTCTCGCTCCGCCCTTGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCGCGTTCACTGGCCAGTGAGGTCCTCTCGCTCCGCCCTTGGTCTC  200

seq1  GCTCGGCCCCGCCTCCCTTTGGACAGCTCCTGCTGCGCAGACTCTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGCCCCGCCTCCCTTTGGACAGCTCCTGCTGCGCAGACTCTGCTCT  250

seq1  TCCCAATGGAGCAGCTCCGGTCCTCCAGAGCACCGAGCCGACTTCCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGGAGCAGCTCCGGTCCTCCAGAGCACCGAGCCGACTTCCTAGA  300

seq1  GACGTCCCCAAGGAGGCACCACCCGGAAGTTCAGGCTTCCCAGAGGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCCCCAAGGAGGCACCACCCGGAAGTTCAGGCTTCCCAGAGGGACC  350

seq1  CTAGCGTGCTTTCTGTAACGCCTGCCGTTACTCCTTCTACCCCGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTGCTTTCTGTAACGCCTGCCGTTACTCCTTCTACCCCGAGGCTG  400

seq1  TCCTAAGAGGGCTCTCCTTTGTCAGAAAAGATGAATGAAGCATAGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAGGGCTCTCCTTTGTCAGAAAAGATGAATGAAGCATAGTAGCT  450

seq1  GTAGCATGAAGGGTTACAGTGTTGCGTGTTAAGGGATGAACCCCCAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGAAGGGTTACAGTGTTGCGTGTTAAGGGATGAACCCCCAAAGT  500

seq1  GCCTGTAGAAAACAGCTCTGGGCCTAATGTCCTGGCTGCGGTGCAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGAAAACAGCTCTGGGCCTAATGTCCTGGCTGCGGTGCAGGATG  550

seq1  AAAGACTCCGGTTGATAGACCGCTACGGAGAAAAACCAAAGAAGGCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCCGGTTGATAGACCGCTACGGAGAAAAACCAAAGAAGGCTGTC  600

seq1  ATGAGAACATCCTCGGGTGCAGGGGTCCATGGATGCCCAGAGACGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACATCCTCGGGTGCAGGGGTCCATGGATGCCCAGAGACGAAGCT  650

seq1  GCAAGGGTAAGTGGGGTCGATCCTCAGGGTTGCAGTTTTCAAACACTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTAAGTGGGGTCGATCCTCAGGGTTGCAGTTTTCAAACACTATC  700

seq1  TTGTGTAGCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  750
      ||||||||||||||    ||| |||||| | ||||||||| |||||||||
seq2  TTGTGTAGCTTTGA----TTTGTTTTTTCTCTTTTTTTTTCTTTTTTTTT  746

seq1  TTTTTTGAGACAAGATCTTGCCTTGTAGCGTAGGCCAGCCTGGAACTCAC  800
      ||||| | |||||||||| ||||| || ||||| ||||||  | ||||||
seq2  TTTTTAGGGACAAGATCTGGCCTT-TACCGTAGCCCAGCCCTGTACTCAC  795

seq1  GAGTCCCCCTGCCTCAGGTTCCCAAGTGCTAGGGTCATAGCCATGCATCA  850
      |||||||||||||||| ||||||||||||||||||||||| ||||| |||
seq2  GAGTCCCCCTGCCTCA-GTTCCCAAGTGCTAGGGTCATAG-CATGCCTCA  843

seq1  CCACTACTCTGTTTTTACTGAAAACATCAGCGCTCTGATTGTGGCCATGA  900
      |||||||| | |||||||||  ||||||| ||||||||| || |||||||
seq2  CCACTACT-TCTTTTTACTG-GAACATCACCGCTCTGATGGT-GCCATGA  890

seq1  AACGGAGCTGGTGCCAGACTGGGTTGGGTTGGACTGTGTTGATGGGCTGG  950
      |   || || |||||| |||||||| |||||||||||||||||  |||||
seq2  A--CGACCT-GTGCCAAACTGGGTTTGGTTGGACTGTGTTGAT--GCTGG  935

seq1  AAGCAG  956
       |||||
seq2  -AGCAG  940