BAC Information

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BAC

Clone NameB6Ng01-120O17
Chromosome5 (Build37)
Map Location 80,755,340 - 80,756,001
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O17.b
ACCDH924736
length988
definitionDH924736|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O17, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctgaacattgtatactgtattaagtataccataagttactg
tacctaaatttgcagtgtcttatgtcaatgatacttgtgttttcagttta
aagaggtgtgtatacattataccttccagcttctacttaggccttttcca
tgttatttaatgaaaatatgcacaaactaaagaaaacaaaacttcttctt
ctatttggagtcttttaactttaatatatatatatatatacacatacata
cacacacgtagatagatgatagatagatagatagatagatagatagatag
atagatagatagtgtgtgtgtgtgtgtgtgtaatgccttgttccctgaca
tggtaattctacagtatgactctagctaagtctctggcagaaagatacca
ccaggtatctttatgcattgtgtttgtgcatgcatagaacttccaaagaa
caaggtatcatgccttatttctatttgtggctgatgtgtggatgacacta
tttatttacaagcttatcaagaactaatatgacaactgcagtagacccat
cactgtcatagatttcctccaactttctcactagccttttaaaaagaatc
tatctacaaatatagtcggaacaaactaattattctttccttacttcaat
gagcaaagaaaaacgtcctatacaacttgtttaaaaatgtgatgtggtat
tcattaaagtcctctaaacattctctttcgttttacatttatacttcatt
cccttggcctattctttcatattatactttttctgaacccaagactgtag
taaactcatgtctaacattaggatagtaagtttactgacacaaattttga
tatgaatggaaaacacattgtttaatagagtcatattaattattgaagta
tcttataaggcaaatttggaaaatttgcacaaagaaatttccaaggctcc
aagaaattagtttttttaagatataatattggctattc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80755340_80756001
seq2: B6Ng01-120O17.b_375_1032 (reverse)

seq1  GAAAAGCCAATATATTATCTTAAAAATACTAATTTCTTGGAGCCTTGGAA  50
      ||| |||||||||  ||||||||||| |||||||||||||||||||||||
seq2  GAATAGCCAATATTATATCTTAAAAAAACTAATTTCTTGGAGCCTTGGAA  50

seq1  ATTTTCTCTGGTGCAAATTTTCCCAATTTGCCTTATAAAGATACTTCAAT  100
      | ||||| | ||||||||||||| |||||||||||| |||||||||||||
seq2  A-TTTCT-TTGTGCAAATTTTCCAAATTTGCCTTAT-AAGATACTTCAAT  97

seq1  AATTAATATGACTCTATTAAAACAATGTGTTTTCCATTCATTTTCAAATT  150
      |||||||||||||||||| |||||||||||||||||||||| |  |||||
seq2  AATTAATATGACTCTATT-AAACAATGTGTTTTCCATTCATATCAAAATT  146

seq1  TGTGTCAGTAAACTTACTATCCTAATGCTAAGACATGAGTTTACTACAGT  200
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  TGTGTCAGTAAACTTACTATCCTAATG-TTAGACATGAGTTTACTACAGT  195

seq1  CTTGGGTTCAG-AAAAGTATAATATGAAAGAATAGGCCAAGGGAATGAAG  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTCAGAAAAAGTATAATATGAAAGAATAGGCCAAGGGAATGAAG  245

seq1  TATAAATGTAAAACGAAAGAGAATGTTTAGAGGACTTTAATGAATACCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTAAAACGAAAGAGAATGTTTAGAGGACTTTAATGAATACCAC  295

seq1  ATCACA-TTTTAAACAAGTTGTATAGGACGTTTTTCTTTGCTCATTGAAG  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTTTTAAACAAGTTGTATAGGACGTTTTTCTTTGCTCATTGAAG  345

seq1  TAAGGAAAGAATAATTAGTTTGTTCCGACTATATTTGTAGATAGATTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGAATAATTAGTTTGTTCCGACTATATTTGTAGATAGATTCTT  395

seq1  TTTAAAAGGCTAGTGAGAAAGTTGGAGGAAATCTATGACAGTGATGGGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCTAGTGAGAAAGTTGGAGGAAATCTATGACAGTGATGGGTC  445

seq1  TACTGCAGTTGTCATATTAGTTCTTGATAAGCTTGTAAATAAATAGTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGTTGTCATATTAGTTCTTGATAAGCTTGTAAATAAATAGTGTC  495

seq1  ATCCACACATCAGCCACAAATAGAAATAAGGCATGATACCTTGTTCTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACATCAGCCACAAATAGAAATAAGGCATGATACCTTGTTCTTTG  545

seq1  GAAGTTCTATGCATGCACAAACACAATGCATAAAGATACCTGGTGGTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTATGCATGCACAAACACAATGCATAAAGATACCTGGTGGTATC  595

seq1  TTTCTGCCAGAGACTTAGCTAGAGTCATCTTGTAGAATTAAGACCTCAAT  648
      ||||||||||||||||||||||||||||  ||||||||||  |  || | 
seq2  TTTCTGCCAGAGACTTAGCTAGAGTCATACTGTAGAATTACCATGTC-AG  644

seq1  AGAACAAGGCATTA  662
       |||||||||||||
seq2  GGAACAAGGCATTA  658