BAC Information

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BAC

Clone NameB6Ng01-122D23
Chromosome5 (Build37)
Map Location 82,570,829 - 82,691,688
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122D23.bB6Ng01-122D23.g
ACCDH925721DH925722
length1,0031,088
definitionDH925721|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D23, 5' end.DH925722|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,570,829 - 82,571,711)(82,690,581 - 82,691,688)
sequence
gaattcaaacccatggtcagctcaaggactgcctaggactggtgaggaat
ctaacttagctgtgtgtcaaaaatcaatccttagaagcacttataataaa
gcaattttagtggaaagaacacagctccgtttaccaactaaaagaaggac
attggagcatttgttatacagaatgccatgattccaggagactaagtttc
catgaacttttcccctggggagagtgcccaggttttttttttgggggggc
ggggctgtcgcacatgtcactactggatcggatgtagcaccatccaaatt
tgaaaaaaaaatgtgaaaaagccatattcaaataccaagttaaactacag
caacaacaaagttggaagtaagactccctaaatggtagggggaaaaaaag
ctctatcttgaagctgtagatcattaaacagaactcacagtgccaagagt
agggagttctcatggattgctagtcagggtgaccttagaagtatttaaag
ctataaaggcttttgtcattgttcttggtttcctgccagtcatggaagaa
atagcattggtgctgaagttatcacacacactttccaccttcattgaatg
atttgctgaaagcaagctgaaactgtgctgagctcctccttgctttccag
ctctcataatgtagaaagtgcatggttctggacgggaaaaggcatgaatg
ttgaaatccagagctataactctgtgctggtttgaaagagaataataaac
acaccaggggctcacatgtttgaaatcttcatcctcagtttgagacagat
taggaagtaagggcttgttgtagtagatctgttcttgttggatgaggcat
gtcacttggagtgagcttgaggttctaatgccctccccacccttgtttct
ctttgcttgttgtttgtgaatcagtatgtaagctcctcagcttctgctat
gcctgttcctgaaataatattatataatataataataatataataatata
ata
gaattctctgatggacttccatatctaatgagcagctggagatttttaaa
ccagggagctatcactgaaaggtaactatttagagccttaaatcttgtca
agcactgaaatatatatcttatatatataatcttcttcctatcagtgctc
ttatcagcaaataaacataagatgattttttatcatttaattttcatgtt
tagaatttattttttgctttcttttcattattttctcagacaataaccta
ataccgtctcttgaccttgttattacccacttacttatcaaaatatgtac
tgggacatttcataaaatatgcatcatattaaggggttagaatcttacat
ctgggattttaggtgaaaattgggtaaacctaaaatagactaataatata
tactaataaaactaataataaaaatttatttctattattcacataggaaa
atcaagtcacaaatatgctaaatatgggaaatacatgaaaattaccaaat
gtaaatttccaatctcaacacttgtttttcaatgcctgtgaacttttcca
gaattttatttttataatgaattcttcatttagtgtttggttgatttcaa
atgtgcttattagaagatgtcaaatacaatagctcaaataataaaacatt
agatgaactatggcaataagattagacaaaaatctattcaaattgctaaa
aaaggattaaatcttttaatgtggttatcctgatttctcttaatagaaat
actatttttaagctgtgaatggctttaaaggaaaaagtcagtatagaatg
actaccattgttacattcagatgtctcaaaaatcagagcttggggagttg
atacttttagactgaaaatgtattaaaactatctcccagtagatatttgt
taaagaaatatattttagcattaatattcatgagcaagagtattctcttt
ttatgctgactatattattatgcttcatagtacactccagcgattgtgtt
tcgtgtcttctgtgtaaactgttaagatgctttgctagtagggtgatgca
cacaaagcttaagctatgattttaatgacaccatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82570829_82571711
seq2: B6Ng01-122D23.b_50_931

seq1  GAATTCAAACCCATGGTCAGCTCAAGGACTGCCTAGGACTGGTGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCATGGTCAGCTCAAGGACTGCCTAGGACTGGTGAGGAAT  50

seq1  CTAACTTAGCTGTGTGTCAAAAATCAATCCTTAGAAGCACTTATAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAGCTGTGTGTCAAAAATCAATCCTTAGAAGCACTTATAATAAA  100

seq1  GCAATTTTAGTGGAAAGAACACAGCTCCGTTTACCAACTAAAAGAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTAGTGGAAAGAACACAGCTCCGTTTACCAACTAAAAGAAGGAC  150

seq1  ATTGGAGCATTTGTTATACAGAATGCCATGATTCCAGGAGACTAAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCATTTGTTATACAGAATGCCATGATTCCAGGAGACTAAGTTTC  200

seq1  CATGAACTTTTCCCCTGGGGAGAGTGCCCAGGTTTTTTTTTTGGGGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTTTTCCCCTGGGGAGAGTGCCCAGGTTTTTTTTTTGGGGGGGC  250

seq1  GGGGCTGTCGCACATGTCACTACTGGATCGGATGTAGCACCATCCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTCGCACATGTCACTACTGGATCGGATGTAGCACCATCCAAATT  300

seq1  TGAAAAAAAAATGTGAAAAAGCCATATTCAAATACCAAGTTAAACTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAATGTGAAAAAGCCATATTCAAATACCAAGTTAAACTACAG  350

seq1  CAACAACAAAGTTGGAAGTAAGACTCCCTAAATGGTAGGGGGAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAGTTGGAAGTAAGACTCCCTAAATGGTAGGGGGAAAAAAAG  400

seq1  CTCTATCTTGAAGCTGTAGATCATTAAACAGAACTCACAGTGCCAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGAAGCTGTAGATCATTAAACAGAACTCACAGTGCCAAGAGT  450

seq1  AGGGAGTTCTCATGGATTGCTAGTCAGGGTGACCTTAGAAGTATTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCTCATGGATTGCTAGTCAGGGTGACCTTAGAAGTATTTAAAG  500

seq1  CTATAAAGGCTTTTGTCATTGTTCTTGGTTTCCTGCCAGTCATGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGGCTTTTGTCATTGTTCTTGGTTTCCTGCCAGTCATGGAAGAA  550

seq1  ATAGCATTGGTGCTGAAGTTATCACACACACTTTCCACCTTCATTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGGTGCTGAAGTTATCACACACACTTTCCACCTTCATTGAATG  600

seq1  ATTTGCTGAAAGCAAGCTGAAACTGTGCTGAGCTCCTCCTTGCTTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAAAGCAAGCTGAAACTGTGCTGAGCTCCTCCTTGCTTTCCAG  650

seq1  CTCTCATAATGTAGAAAGTGCATGGTTCTGGACGGGAAAAGGCATGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAATGTAGAAAGTGCATGGTTCTGGACGGGAAAAGGCATGAATG  700

seq1  TTGAAATCCAGAGCTATAACTCTGTGCTGGTTTGAAAGAGAATAATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCAGAGCTATAACTCTGTGCTGGTTTGAAAGAGAATAATAAAC  750

seq1  ACACCAGGGGCTCACATGTTTGAAATCTTCATCCTCAGTTTGAGACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGGGCTCACATGTTTGAAATCTTCATCCTCAGTTTGAGACAGAT  800

seq1  TAGGAAGTAAGGGCTTGTTGTAGTAGATCTGTTCTTGTTGGATGAGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTAAGGGCTTGTTGTAGTAGATCTGTTCTTGTTGGATGAGGCAT  850

seq1  GTCACTTGGAGTGAGCTTGAGGTTTCTAATGCC  883
      |||||||||||||||||||||| ||||||||||
seq2  GTCACTTGGAGTGAGCTTGAGG-TTCTAATGCC  882

seq1: chr5_82690581_82691688
seq2: B6Ng01-122D23.g_68_1155 (reverse)

seq1  AAACATTTGTGTCATTATAAAACCATAGCTTAAAGCTTGTGTGCATTCCA  50
      ||||| | |||||||  ||||| ||||||||||   ||||||||||  ||
seq2  AAACA-TGGTGTCAT--TAAAATCATAGCTTAAGCTTTGTGTGCAT--CA  45

seq1  CCCTACTAAGCAAAGCATCTT-ACAGTTTAACACAGAAGACACGAAAACA  99
      ||||||| ||||||||||||| ||||||| |||||||||||||| |||||
seq2  CCCTACT-AGCAAAGCATCTTAACAGTTT-ACACAGAAGACACG-AAACA  92

seq1  CAATCGCTGGAAGTGTAACTATTGAAAGCATAATAATAATAGTTCAGCAT  149
      |||||||||| ||||| |||||   |||||||||||| |||| |||||||
seq2  CAATCGCTGG-AGTGT-ACTAT--GAAGCATAATAAT-ATAG-TCAGCAT  136

seq1  AAAAAGAGAATTACTCTTTGCTCATGAATATTTAATGCTAAAATATATTT  199
      |||||||||| ||||| ||||||||||||| |||||||||||||||| ||
seq2  AAAAAGAGAA-TACTC-TTGCTCATGAATA-TTAATGCTAAAATATA-TT  182

seq1  TCTTTAACAAATATCTACTGGGAGATAGTTTTAATTACATTTTCAGTTCT  249
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TCTTTAACAAATATCTACTGGGAGATAGTTTTAA-TACATTTTCAG-TCT  230

seq1  AAAAGTATCAACTCCCCAAGCTCTGATTTTTGAGACATCTGAATGTAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCAACTCCCCAAGCTCTGATTTTTGAGACATCTGAATGTAACA  280

seq1  ATGGTAGTCATTCTATACTGACTTTTTCCTTTAAAGCCATTCACAGCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTCATTCTATACTGACTTTTTCCTTTAAAGCCATTCACAGCTTA  330

seq1  AAAATAGTATTTCTATTTAAGAGAAATCAGGATAACCACATTAAAAGATT  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAATAGTATTTCTA-TTAAGAGAAATCAGGATAACCACATTAAAAGATT  379

seq1  TAATCCTTTTTTAGCAATTTGAATAGATTTTTGTCTAATCTTATTGCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTTTTAGCAATTTGAATAGATTTTTGTCTAATCTTATTGCCAT  429

seq1  AGTTCATCTAATGTTTTATTATTTGAGCTATTGTATTTGACATCTTCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTAATGTTTTATTATTTGAGCTATTGTATTTGACATCTTCTAA  479

seq1  TAAGCACATTTGAAATCAACCAAACACTAAATGAAGAATTCATTATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACATTTGAAATCAACCAAACACTAAATGAAGAATTCATTATAAAA  529

seq1  ATAAAATTCTGGAAAAGTTCACAGGCATTGAAAAACAAGTGTTGAGATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCTGGAAAAGTTCACAGGCATTGAAAAACAAGTGTTGAGATTG  579

seq1  GAAATTTACATTTGGTAATTTTCATGTATTTCCCATATTTAGCATATTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTACATTTGGTAATTTTCATGTATTTCCCATATTTAGCATATTTG  629

seq1  TGACTTGATTTTCCTATGTGAATAATAGAAATAAATTTTTATTATTAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGATTTTCCTATGTGAATAATAGAAATAAATTTTTATTATTAGTT  679

seq1  TTATTAGTATATATTATTAGTCTATTTTAGGTTTACCCAATTTTCACCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTATATATTATTAGTCTATTTTAGGTTTACCCAATTTTCACCTA  729

seq1  AAATCCCAGATGTAAGATTCTAACCCCTTAATATGATGCATATTTTATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGATGTAAGATTCTAACCCCTTAATATGATGCATATTTTATGA  779

seq1  AATGTCCCAGTACATATTTTGATAAGTAAGTGGGTAATAACAAGGTCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCAGTACATATTTTGATAAGTAAGTGGGTAATAACAAGGTCAAG  829

seq1  AGACGGTATTAGGTTATTGTCTGAGAAAATAATGAAAAGAAAGCAAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTATTAGGTTATTGTCTGAGAAAATAATGAAAAGAAAGCAAAAAA  879

seq1  TAAATTCTAAACATGAAAATTAAATGATAAAAAATCATCTTATGTTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAAACATGAAAATTAAATGATAAAAAATCATCTTATGTTTATT  929

seq1  TGCTGATAAGAGCACTGATAGGAAGAAGATTATATATATAAGATATATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAAGAGCACTGATAGGAAGAAGATTATATATATAAGATATATAT  979

seq1  TTCAGTGCTTGACAAGATTTAAGGCTCTAAATAGTTACCTTTCAGTGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTTGACAAGATTTAAGGCTCTAAATAGTTACCTTTCAGTGATA  1029

seq1  GCTCCCTGGTTTAAAAATCTCCAGCTGCTCATTAGATATGGAAGTCCATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGTTTAAAAATCTCCAGCTGCTCATTAGATATGGAAGTCCATC  1079

seq1  AGAGAATTC  1108
      |||||||||
seq2  AGAGAATTC  1088