BAC Information

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BAC

Clone NameB6Ng01-122L18
Chromosome5 (Build37)
Map Location 106,961,310 - 107,103,307
singlet/doubletdoublet
Overlap geneEG666892, LOC100042389, Zfp644
Upstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2
Downstream geneLOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L18.bB6Ng01-122L18.g
ACCDH926082DH926083
length1,035601
definitionDH926082|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L18, 5' end.DH926083|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,961,310 - 106,962,344)(107,102,707 - 107,103,307)
sequence
gaattcaagatgccctggtcttgtgtactaataacaccatcaaaggcatt
cttatgtttttggttgtgagcctcacctttaactgctgagccatctctcc
agcccggtattcttaatttctatcacaaagtatttattctctagcatttt
tatccttctcagattgtccatatctatgtatatctgttcctacaagctgt
ctaattcccgccttaggcttcttagccgagaaatcagtgtattcaaattc
atcatctaatagctgcagcaatcttgccacacctgaattttaagcatatc
ttagtaataccttttgttggcatccagacgtgatctaacgagctgactgg
agcctttgtggtgtagtgggaagaggcgagaggaatgaagatgagctgtt
tgccgtctcctgatcagggatcgggtctcagccttcacataagtctgcaa
tcctaaaatatgaacttcacaggggacccccccagcttttctccctatgt
gatggggccatggtatttagagggatagaattatatttatttcttgactt
attttgtagtaattttgcactttttccaccctcccacgacatgaagagaa
ccatgtccacagcaggttcttctctaagtactgcttgcttaccatgcagt
caaagttcccgtaggttattccaccccagtagggaaaatacaggttgttg
ttgttgttgttgttgttgttgttttctgaagatgtatcttgttaagaaca
atctatttttaggatggccagttttgctcttctccatgggagcagcacga
agagacgctgcaggcggtagacctcacagggagcgggggtgtctgctaga
gtttcagctctcggagactcctctgtgctgaactttcgctgtcagtcaca
gcaccttactgtggtgcccgtcatggacttctgtggaggttttgcttggg
tgagcagtgacttttcagatattgcctgctggttctctacgtttgaagac
cgtggtcttccccctgtggattgcaattctctggt
gaattctctagaggctttttttagttggaaattttctaaaaaggagtttt
gcttgaatgtgtatgtgtgatcccctggaattggaactagatagttgtga
gccactgtgtgtgtgctgggaattgagtctgggtcctctgcaagagtacc
aagtgttttgaatcactgagccctctctctagccccttagttgaaaatgt
ttaatttctgcatcttgttactcatatctccgtggactgaagtgcttgac
aagaccaactttaggggaggaaggtttcttatggcatgtgattgtagagc
ttgtcagtctggccgctcaggtcatggcagtgcagtttgtgacaggaacc
tgtaagctttcagaggctcaccccagctgacctacatcggacattcagcc
ccacatcatgaaggttccacagcctttaaaaatagtgtcactagctgagg
gaccaagtcttcaaagcacaagtgtttgggaggtgtttcaaattcaaacc
ataatagcatctaatcctttcaatagttatggattattcagaggttttac
ttttcttgtgacttaagttttagtgtatatatatgtgtgtgtatgtatgt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106961310_106962344
seq2: B6Ng01-122L18.b_48_1082

seq1  GAATTCAAGATGCCCTGGTCTTGTGTACTAATAACACCATCAAAGGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGCCCTGGTCTTGTGTACTAATAACACCATCAAAGGCATT  50

seq1  CTTATGTTTTTGGTTGTGAGCCTCACCTTTAACTGCTGAGCCATCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTTTGGTTGTGAGCCTCACCTTTAACTGCTGAGCCATCTCTCC  100

seq1  AGCCCGGTATTCTTAATTTCTATCACAAAGTATTTATTCTCTAGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGTATTCTTAATTTCTATCACAAAGTATTTATTCTCTAGCATTTT  150

seq1  TATCCTTCTCAGATTGTCCATATCTATGTATATCTGTTCCTACAAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCTCAGATTGTCCATATCTATGTATATCTGTTCCTACAAGCTGT  200

seq1  CTAATTCCCGCCTTAGGCTTCTTAGCCGAGAAATCAGTGTATTCAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCCGCCTTAGGCTTCTTAGCCGAGAAATCAGTGTATTCAAATTC  250

seq1  ATCATCTAATAGCTGCAGCAATCTTGCCACACCTGAATTTTAAGCATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTAATAGCTGCAGCAATCTTGCCACACCTGAATTTTAAGCATATC  300

seq1  TTAGTAATACCTTTTGTTGGCATCCAGACGTGATCTAACGAGCTGACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATACCTTTTGTTGGCATCCAGACGTGATCTAACGAGCTGACTGG  350

seq1  AGCCTTTGTGGTGTAGTGGGAAGAGGCGAGAGGAATGAAGATGAGCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGTGGTGTAGTGGGAAGAGGCGAGAGGAATGAAGATGAGCTGTT  400

seq1  TGCCGTCTCCTGATCAGGGATCGGGTCTCAGCCTTCACATAAGTCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCTCCTGATCAGGGATCGGGTCTCAGCCTTCACATAAGTCTGCAA  450

seq1  TCCTAAAATATGAACTTCACAGGGGACCCCCCCAGCTTTTCTCCCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATATGAACTTCACAGGGGACCCCCCCAGCTTTTCTCCCTATGT  500

seq1  GATGGGGCCATGGTATTTAGAGGGATAGAATTATATTTATTTCTTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCCATGGTATTTAGAGGGATAGAATTATATTTATTTCTTGACTT  550

seq1  ATTTTGTAGTAATTTTGCACTTTTTCCACCCTCCCACGACATGAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGTAATTTTGCACTTTTTCCACCCTCCCACGACATGAAGAGAA  600

seq1  CCATGTCCACAGCAGGTTCTTCTCTAAGTACTGCTTGCTTACCATGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCACAGCAGGTTCTTCTCTAAGTACTGCTTGCTTACCATGCAGT  650

seq1  CAAAGTTCCCGTAGGTTA----ACCTGTTTTTAGTAGGGAAAATACAGGT  696
      ||||||||||||||||||    |||       ||||||||||||||||||
seq2  CAAAGTTCCCGTAGGTTATTCCACC-----CCAGTAGGGAAAATACAGGT  695

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTCTGAAGATGTATCTTGTTA  746
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTG-TTTTCTGAAGATGTATCTTGTTA  744

seq1  AGAACAATCTATTTTTAGGATGGCCAGTTTTGCTCTTCTCCATGGGAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATCTATTTTTAGGATGGCCAGTTTTGCTCTTCTCCATGGGAGCA  794

seq1  GCACGAAGAGACGCTGCAGGCGGTAGACCTCACAGGGAGC-GGGGTGTCT  845
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACGAAGAGACGCTGCAGGCGGTAGACCTCACAGGGAGCGGGGGTGTCT  844

seq1  GCTAGAGTTTCAGCTCTCGGAGACTCCTCTGTGCTGAACTTTCGCTGTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTTCAGCTCTCGGAGACTCCTCTGTGCTGAACTTTCGCTGTCA  894

seq1  GTCACAGCACCTTACTTGTGGTGCCCGTCATGGACTTCTGTGGAGGTTTT  945
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  GTCACAGCACCTTAC-TGTGGTGCCCGTCATGGACTTCTGTGGAGG-TTT  942

seq1  TGCTTTGGTGAGCAGTGACTTTTCAGATA-TGCCTGCTGGTTCTCTACGT  994
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTTGGGTGAGCAGTGACTTTTCAGATATTGCCTGCTGGTTCTCTACGT  992

seq1  TTGAGAGCCGT-GTCTTCACCCTGT-GAATGCAATTCTCTGGT  1035
      ||||   |||| |||||| |||||| || ||||||||||||||
seq2  TTGAAGACCGTGGTCTTCCCCCTGTGGATTGCAATTCTCTGGT  1035

seq1: chr5_107102707_107103307
seq2: B6Ng01-122L18.g_67_667 (reverse)

seq1  TACATACATACACACACATATATATACACTAAAACTTAAGTCACAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACACACACATATATATACACTAAAACTTAAGTCACAAGAAA  50

seq1  AGTAAAACCTCTGAATAATCCATAACTATTGAAAGGATTAGATGCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCTCTGAATAATCCATAACTATTGAAAGGATTAGATGCTATTA  100

seq1  TGGTTTGAATTTGAAACACCTCCCAAACACTTGTGCTTTGAAGACTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAATTTGAAACACCTCCCAAACACTTGTGCTTTGAAGACTTGGT  150

seq1  CCCTCAGCTAGTGACACTATTTTTAAAGGCTGTGGAACCTTCATGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTAGTGACACTATTTTTAAAGGCTGTGGAACCTTCATGATGTG  200

seq1  GGGCTGAATGTCCGATGTAGGTCAGCTGGGGTGAGCCTCTGAAAGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAATGTCCGATGTAGGTCAGCTGGGGTGAGCCTCTGAAAGCTTAC  250

seq1  AGGTTCCTGTCACAAACTGCACTGCCATGACCTGAGCGGCCAGACTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGTCACAAACTGCACTGCCATGACCTGAGCGGCCAGACTGACA  300

seq1  AGCTCTACAATCACATGCCATAAGAAACCTTCCTCCCCTAAAGTTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACAATCACATGCCATAAGAAACCTTCCTCCCCTAAAGTTGGTCT  350

seq1  TGTCAAGCACTTCAGTCCACGGAGATATGAGTAACAAGATGCAGAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCACTTCAGTCCACGGAGATATGAGTAACAAGATGCAGAAATTA  400

seq1  AACATTTTCAACTAAGGGGCTAGAGAGAGGGCTCAGTGATTCAAAACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCAACTAAGGGGCTAGAGAGAGGGCTCAGTGATTCAAAACACT  450

seq1  TGGTACTCTTGCAGAGGACCCAGACTCAATTCCCAGCACACACACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTCTTGCAGAGGACCCAGACTCAATTCCCAGCACACACACAGTGG  500

seq1  CTCACAACTATCTAGTTCCAATTCCAGGGGATCACACATACACATTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTATCTAGTTCCAATTCCAGGGGATCACACATACACATTCAAG  550

seq1  CAAAACTCCTTTTTAGAAAATTTCCAACTAAAAAAAGCCTCTAGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCTTTTTAGAAAATTTCCAACTAAAAAAAGCCTCTAGAGAATT  600

seq1  C  601
      |
seq2  C  601