BAC Information

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BAC

Clone NameB6Ng01-124A17
Chromosome5 (Build37)
Map Location 31,157,104 - 31,296,138
singlet/doubletdoublet
Overlap geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Upstream geneLOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
Downstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A17.bB6Ng01-124A17.g
ACCDH927053DH927054
length1,1551,049
definitionDH927053|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A17, 5' end.DH927054|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,157,104 - 31,158,254)(31,295,079 - 31,296,138)
sequence
atgtgggggaaggatggatcccgcgggaatttctccagaaccatccagaa
caaggctctaattgtgggagaaatccttagagattagaaacaactggagc
cctggattgtctttgagacatgtgtagaaggtgtatatccattaaagact
ttgaaacagaaaccccaaaaggaaatgtagttaggatagtggtaaggcat
taaagattagactcgaggtattgagacatttgccatttagaactgacgct
gctagcatgggagctaccacaggagtccctaagaaggaactgagggtcta
tagggacccttctttcttctttctttctttctttctttctttttttcttt
aattctttctttctttaatcttccttccttccttccttctttacttcctt
ccttcgttttttgtttttgtttttcgagacagagtttctctttgtaatcc
tggctggctgtcctggaactcactttgtaaaccaagcttgcctcgaactc
agaaatccgcctgcctctgcctcccaagtgctaggattaaaggcgtgtgc
cacctctgctcggccagaaacccttctttaaaacaactatttattcggag
gtggggcacacatggacatgcgcacactacagcacatctgtgcatgtcag
aggacaactcagaatctgttctttcctgtcaccatgtggacaatcaaact
taggttatcaggcatggcagccactttacccactgaactacctcaccaac
cctctaggaaccccttctgaccatggcataataggagttggtcttggtgg
ctgtttggggacctcagccagcagaataaacagaagctccacctctcatc
agagatgtgggcaccctctccttgcctgtgacagcccccagaccctgagg
acctggctcagcaatgatctagcactaagtcacagattgcacctcctagt
gatcctctttctgactctagactagcagcaggagtcaagggcctgaaagc
aggtttttccaggaccctggttgacctaacctaagtccctagctacctgt
aggaacgtgcctacccgtcaggaaagtttctctgacatgcacttttgtgc
agaatgcattaaaaatagacaagtcagagcctgaggtgtgttccatggag
gttgc
gaattcagtatgtagataagattggcctcaaactttccgcagactcctcc
tacttcccaagagctgggatcccacactagggctgtgacatttagtcaag
atcacagttttctatcacaggataaaacccaaattctcagggccagctgg
tgacaatgtacagtgacagagcttttaaaaatgagctgcatgcagggccc
agtacactgcagctgtcacttgtgtggtctgaagctttgaaagccaccac
tcactgtcctttggttttggcacagtggcagagagtggggtagacgccac
ctctggagaccatgtgaacatctctgtaaaagacttaactgagtattctg
gtctcttccaagcccactcagcatagaccaacgtgccaaagaaaagatgg
agggagtggagattttctgtgggagctggtgctgcttcaagactattttt
atgcttttctctatggagataattatatctctggttctgattatagactg
tgaatactgagttcttggtgccactcatggacagatgcaaacccacagct
cctttgcccagccactagcttttccacggtagtgactagtccataggggc
acagtcctgggaggaacagggggacaaaccactttgtttgtcaggtccca
tgaactctgggccaccgcctaatcagcactgggaaattctggctgccagg
tgggaaaccacatgacaactactttaaaaacatttccccggggacacaaa
agcatctaatggtaaacaccttttttttgagacaggcccaataacctggg
tctatgaataatcctttcctttctttctttcctctttcctctttctttcc
atttaaaatatttatttactttttaaagtacactataactgtcttcagac
acaccagaagaggcgtcagatctcatacagacggttgtgagccacatgtg
gttggtgggactgaactcaggacctctagaagaacagtaatgtcctaacc
gctgagcatctctcccacccaaccctttcatttattggagaaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31157104_31158254
seq2: B6Ng01-124A17.b_31_1155

seq1  TTCTCCAGAACCATCCAGAACAAGG--CTGAATGTGGGAGAAATCCTTAG  48
      |||||||||||||||||||||||||  || | ||||||||||||||||||
seq2  TTCTCCAGAACCATCCAGAACAAGGCTCTAATTGTGGGAGAAATCCTTAG  50

seq1  AGATTAGAAACAACTGGAGCCCTGGATTGTCTTTGAGACATGTGTAGAAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAAACAACTGGAGCCCTGGATTGTCTTTGAGACATGTGTAGAAG  100

seq1  GTGTATATCCATTAAAGACTTTGAAACAGAAACCCCAAAAGGAAATGTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATCCATTAAAGACTTTGAAACAGAAACCCCAAAAGGAAATGTAG  150

seq1  TTAGGATAGTGGTAAGGCATTAAAGATTAGACTCGAGGTATTGAGACATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATAGTGGTAAGGCATTAAAGATTAGACTCGAGGTATTGAGACATT  200

seq1  TGCCATTTAGAACTGACGCTGCTAGCATGGGAGCTACCACAGGAGTCCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTAGAACTGACGCTGCTAGCATGGGAGCTACCACAGGAGTCCCT  250

seq1  AAGAAGGAACTGAGGGTCTATAGGGACCCTTCTTTCTTCTTTCTTTCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAACTGAGGGTCTATAGGGACCCTTCTTTCTTCTTTCTTTCTTT  300

seq1  CTTTCTTTCTTTTTTTCTTTAATTCTTTCTTTCTTTAATCTTCCTTCCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTTTTCTTTAATTCTTTCTTTCTTTAATCTTCCTTCCTT  350

seq1  CCTTCCTTCTTTACTTCCTTCCTTCGTTTTTTGTTTTTGTTTTTCGAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTTTACTTCCTTCCTTCGTTTTTTGTTTTTGTTTTTCGAGAC  400

seq1  AGAGTTTCTCTTTGTAATCCTGGCTGGCTGTCCTGGAACTCACTTTGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTCTTTGTAATCCTGGCTGGCTGTCCTGGAACTCACTTTGTAA  450

seq1  ACCAAGCTTGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  500

seq1  CTAGGATTAAAGGCGTGTGCCACCTCTGCTCGGCCAGAAACCCTTCTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTAAAGGCGTGTGCCACCTCTGCTCGGCCAGAAACCCTTCTTTA  550

seq1  AAACAACTATTTATTCGGAGGTGGGGCACACATGGACATGCGCACACTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTATTTATTCGGAGGTGGGGCACACATGGACATGCGCACACTAC  600

seq1  AGCACATCTGTGCATGTCAGAGGACAACTCAGAATCTGTTCTTTCCTGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTGTGCATGTCAGAGGACAACTCAGAATCTGTTCTTTCCTGTC  650

seq1  ACCATGTGGACAATCAAACTTAGGTTATCAGGCATGGCAGCCACTTTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGACAATCAAACTTAGGTTATCAGGCATGGCAGCCACTTTACC  700

seq1  CACTGAACTACCTCACCAACCCTCTAGGAACCCCTTCTGACCATGGCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTACCTCACCAACCCTCTAGGAACCCCTTCTGACCATGGCATA  750

seq1  ATAGGAGTTGGTCTTGGTGGCTGTTTGGGGACCTCAGCCAGCAGAATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTTGGTCTTGGTGGCTGTTTGGGGACCTCAGCCAGCAGAATAAA  800

seq1  CAGAAGCTCCACCTCTCATCAGAGATGTGGGCACCCTCTCCTTGCCTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCCACCTCTCATCAGAGATGTGGGCACCCTCTCCTTGCCTGTG  850

seq1  ACAGCCCCCAGACCCTGAGGACCCTGGCTCAGGCAATGATCTAGCACTAA  898
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  ACAGCCCCCAGACCCTGAGGA-CCTGGCTCA-GCAATGATCTAGCACTAA  898

seq1  GTCACAGATTGCACCTCCTAGTGATCCTCTTTCTGACTCTAGACCTAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCACAGATTGCACCTCCTAGTGATCCTCTTTCTGACTCTAGA-CTAGCA  947

seq1  GCAGGAGTCAAGGGCCTGAAAAGCAGGTTTTTCCCAGGACCCCTGGTTGA  998
      |||||||||||||||||| ||||||||||||| |||||| ||||||||||
seq2  GCAGGAGTCAAGGGCCTG-AAAGCAGGTTTTT-CCAGGA-CCCTGGTTGA  994

seq1  CCTAACCCTAGAGTCCCCTAGCTAACCTGTAAGGAAACGTGCCATAACCC  1048
      ||||| |||| ||| |||||||| |||||||  | |||||||| ||  ||
seq2  CCTAA-CCTA-AGT-CCCTAGCT-ACCTGTA--GGAACGTGCC-TA--CC  1035

seq1  AGTCAGGAGATGTTTCTCCTGACAGTCACCTTGTGGCAAGAATGGCAGTA  1098
       ||||||| | |||||| ||||||  || ||| ||   ||||| ||| ||
seq2  CGTCAGGA-AAGTTTCT-CTGACATGCA-CTTTTGTGCAGAAT-GCATTA  1081

seq1  GAGAGATGAGGACAAAGTTCAAGAGCCTGAGGTTGTGTCCCCATGGAGGT  1148
       | | |    ||| ||||   ||||||||||| |||||  ||||||||||
seq2  AAAATA----GAC-AAGT--CAGAGCCTGAGG-TGTGT-TCCATGGAGGT  1122

seq1  TGC  1151
      |||
seq2  TGC  1125

seq1: chr5_31295079_31296138
seq2: B6Ng01-124A17.g_69_1117 (reverse)

seq1  TTTTATTTCTCACAAATAAATGGAAAGGGGTTGGGGTGGGAGAGATGGCT  50
      |||||||| || | ||||||| |||||||  | ||||||||||||| |||
seq2  TTTTATTT-TCTCCAATAAAT-GAAAGGG--TTGGGTGGGAGAGAT-GCT  45

seq1  CAGCGGTTAAGAACACTAACTGTTCTTCTAGAGGTCCTGAGTTCAGTTCC  100
      |||||||| || ||| | |||||||||||||||||||||||||||| |||
seq2  CAGCGGTT-AGGACA-TTACTGTTCTTCTAGAGGTCCTGAGTTCAG-TCC  92

seq1  CACCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACGCCCT  150
      |||||||||||| ||||||||||||| ||||| ||||||||||||| |||
seq2  CACCAACCACAT-GTGGCTCACAACCGTCTGT-ATGAGATCTGACG-CCT  139

seq1  CTTCTGGTGTGTCTGAAGACAGTTATAGTGTACTTTAAAAAGTAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGACAGTTATAGTGTACTTTAAAAAGTAAATAAA  189

seq1  TATTTTAAAATGGAAAGAAAGAAGGAAAGAGGGAAAGAAAGAAAGGAAAG  250
      |||||| |||||||||||||| |||||||| |||||||||||||||||||
seq2  TATTTT-AAATGGAAAGAAAG-AGGAAAGA-GGAAAGAAAGAAAGGAAAG  236

seq1  GATTATTCATAGACCCAGGTTATTGGGCCTGTCTCAAAAAAAAGGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCATAGACCCAGGTTATTGGGCCTGTCTCAAAAAAAAGGTGTTT  286

seq1  ACCATTAGATGCTTTTGTGTCCCCGGGGAAATGTTTTTAAAGTAGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGATGCTTTTGTGTCCCCGGGGAAATGTTTTTAAAGTAGTTGTC  336

seq1  ATGTGGTTTCCCACCTGGCAGCCAGAA-TTCCCAGTGCTGATTAGGCGGT  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTGGTTTCCCACCTGGCAGCCAGAATTTCCCAGTGCTGATTAGGCGGT  386

seq1  GGCCCAGAGTTCATGGGACCTGACAAAC-AAGTGGTTTGT-CCCCTGTTC  447
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GGCCCAGAGTTCATGGGACCTGACAAACAAAGTGGTTTGTCCCCCTGTTC  436

seq1  CTCCCAGGACTGTGCCCCTATGGACTAGTCACTACCGTGGAAAAGCTAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGACTGTGCCCCTATGGACTAGTCACTACCGTGGAAAAGCTAGT  486

seq1  GGCTGGGCAAAGGAGCTGTGGGTTTGCATCTGTCCATGAGTGGCACCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCAAAGGAGCTGTGGGTTTGCATCTGTCCATGAGTGGCACCAAG  536

seq1  AACTCAGTATTCACAGTCTATAATCAGAACCAGAGATATAATTATCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTATTCACAGTCTATAATCAGAACCAGAGATATAATTATCTCCA  586

seq1  TAGAGAAAAGCATAAAAATAGTCTTGAAGCAGCACCAGCTCCCACAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAAGCATAAAAATAGTCTTGAAGCAGCACCAGCTCCCACAGAAA  636

seq1  ATCTCCACTCCCTCCATCTTTTCTTTGGCACGTTGGTCTATGCTGAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACTCCCTCCATCTTTTCTTTGGCACGTTGGTCTATGCTGAGTGG  686

seq1  GCTTGGAAGAGACCAGAATACTCAGTTAAGTCTTTTACAGAGATGTTCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAGAGACCAGAATACTCAGTTAAGTCTTTTACAGAGATGTTCAC  736

seq1  ATGGTCTCCAGAGGTGGCGTCTACCCCACTCTCTGCCACTGTGCCAAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCCAGAGGTGGCGTCTACCCCACTCTCTGCCACTGTGCCAAAAC  786

seq1  CAAAGGACAGTGAGTGGTGGCTTTCAAAGCTTCAGACCACACAAGTGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACAGTGAGTGGTGGCTTTCAAAGCTTCAGACCACACAAGTGACA  836

seq1  GCTGCAGTGTACTGGGCCCTGCATGCAGCTCATTTTTAAAAGCTCTGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTGTACTGGGCCCTGCATGCAGCTCATTTTTAAAAGCTCTGTCA  886

seq1  CTGTACATTGTCACCAGCTGGCCCTGAGAATTTGGGTTTTATCCTGTGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTGTCACCAGCTGGCCCTGAGAATTTGGGTTTTATCCTGTGAT  936

seq1  AGAAAACTGTGATCTTGACTAAATGTCACAGCCCTAGTGTGGGATCCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGTGATCTTGACTAAATGTCACAGCCCTAGTGTGGGATCCCAG  986

seq1  CTCTTGGGAAGTAGGAGGAGTCTGCGGAAAGTTTGAGGCCAATCTTATCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGAAGTAGGAGGAGTCTGCGGAAAGTTTGAGGCCAATCTTATCT  1036

seq1  ACATACTGAATTC  1060
      |||||||||||||
seq2  ACATACTGAATTC  1049