BAC Information

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BAC

Clone NameB6Ng01-124F24
Chromosome5 (Build37)
Map Location 80,561,917 - 80,684,868
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124F24.bB6Ng01-124F24.g
ACCDH927300DH927301
length1,059904
definitionDH927300|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F24, 5' end.DH927301|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,561,917 - 80,562,978)(80,683,967 - 80,684,868)
sequence
gaattcagtggcagtgttccccagcagagcaattcactgagtagccaaga
gaagacaatttgaatcagtcagcttggagaagagccagaacagctgattt
gaaccagacaggcaagagttcagaaacaacaagaaatatttagtttattc
atcagtaaacttctgagacaacaattacatctggcaaacaaaagctaatt
ttacatgttacttactatgttgttccttatgcctttctcagcctgcagtc
atacagcatccaggaccaccagcttgagttcctatgttctgcatctcccc
tggtggtgtctggatgtcacagatacaactgctgggagcaggagtagggg
tggctgggcaaagcccagaatgggacaatctgcagtctgcatttcccttc
agggtattatagcactgctgcacagcaggctgaaggggaaagaggggcct
gcgacacaggcagcaatctggtgtgctttggagctacagcccagtaacag
agagatcgagagaaggacttcttcgggagtcttagtattgtagttctttt
agaggaaggcatcccctctgagaaactataatgaaggggctctccatcat
gatttagctttttcatagttatttattgagtgtggatgtgagtgcatatt
ctttattcaatgtgaacaaaggattatataattagagactatcatgagaa
tagccagggagagaaggtcattggatgaaggctaaggctattgagatgcc
tcattagtgtgaacaggcagtctaggtgttatgtttcagactgattgtct
gtagtcaccccagttgaaggtcatgatccaggtgtatacattgggctcag
agatggcatcttcatgtttaactaggcctatacacatcagtaatcagtct
agacaatgtagttatcaatggttcatctgttagtggcgattctcagttga
tgcttcagtatgtgccagtttggctaaaactaagtagcaggaatgccatt
gacaaccccagtctggaagatcccgatacatctaaatgatgaaattatta
aaagtgtgc
gaattcatggaacaggaagtttgatcacagattttgcaaattcttcagca
gggtaacacttgtcacaaagttattcagttatttaaaacatggttgcata
ttttctgaaactatatatccttgatataccttggaagaaatatcaaatgt
tatctagtttaattatgacaataaattttcaagaattttcaattttaatt
aaaataagtcaccaaacccctaattaatattaaatagcatttaattgtcc
tcaatggtatatttggcagagtaataagtgagcataaagctaaattaaga
atgcaaaagtaaataaaacaaaacaaaggaaaagggcaaaaatgtccctt
actgttctctatttctcctttcctattgagattgtctgcctatgatacaa
agtcttttgttattacgtcttgtctgtagattcatagtgttgatgattcc
tctgctttttatttccttccaattttaagtcccttttgttaggaaatgat
gtcatttctcatgcaggaatgagttccaattaaaaggaattacagacatg
agaaaagatttgtggagaaccagcaaaactctcccacagttctctgaaat
cacgaggtgcagacaggtgctcgctacactaatgaggaaactgtggcctt
tgctcttgatgtgtgaaaagctctgaggatgagattagcacacgcagcaa
tatctccctttccccagatgtacggctggaggagtgggaggtttatgaaa
tcagcctttcaatagccgaatattttaagaaacgctttcgaccacgaaga
gtgccatgaaaatgtaacattcaaaataattgttgactatttatatctat
atccaaatgattggatctattgggatgctgaagaaggatactggggaaag
acag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80561917_80562978
seq2: B6Ng01-124F24.b_46_1104

seq1  GAATTCAGTGGCAGTGTTCCCCAGCAGAGCAATTCACTGAGTAGCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCAGTGTTCCCCAGCAGAGCAATTCACTGAGTAGCCAAGA  50

seq1  GAAGACAATTTGAATCAGTCAGCTTGGAGAAGAGCCAGAACAGCTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAATTTGAATCAGTCAGCTTGGAGAAGAGCCAGAACAGCTGATTT  100

seq1  GAACCAGACAGGCAAGAGTTCAGAAACAACAAGAAATATTTAGTTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGACAGGCAAGAGTTCAGAAACAACAAGAAATATTTAGTTTATTC  150

seq1  ATCAGTAAACTTCTGAGACAACAATTACATCTGGCAAACAAAAGCTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAACTTCTGAGACAACAATTACATCTGGCAAACAAAAGCTAATT  200

seq1  TTACATGTTACTTACTATGTTGTTCCTTATGCCTTTCTCAGCCTGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTACTTACTATGTTGTTCCTTATGCCTTTCTCAGCCTGCAGTC  250

seq1  ATACAGCATCCAGGACCACCAGCTTGAGTTCCTATGTTCTGCATCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCATCCAGGACCACCAGCTTGAGTTCCTATGTTCTGCATCTCCCC  300

seq1  TGGTGGTGTCTGGATGTCACAGATACAACTGCTGGGAGCAGGAGTAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTCTGGATGTCACAGATACAACTGCTGGGAGCAGGAGTAGGGG  350

seq1  TGGCTGGGCAAAGCCCAGAATGGGACAATCTGCAGTCTGCATTTCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCAAAGCCCAGAATGGGACAATCTGCAGTCTGCATTTCCCTTC  400

seq1  AGGGTATTATAGCACTGCTGCACAGCAGGCTGAAGGGGAAAGAGGGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTATAGCACTGCTGCACAGCAGGCTGAAGGGGAAAGAGGGGCCT  450

seq1  GCGACACAGGCAGCAATCTGGTGTGCTTTGGAGCTACAGCCCAGTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACACAGGCAGCAATCTGGTGTGCTTTGGAGCTACAGCCCAGTAACAG  500

seq1  AGAGATCGAGAGAAGGACTTCTTCGGGAGTCTTAGTATTGTAGTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCGAGAGAAGGACTTCTTCGGGAGTCTTAGTATTGTAGTTCTTTT  550

seq1  AGAGGAAGGCATCCCCTCTGAGAAACTATAATGAAGGGGCTCTCCATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGCATCCCCTCTGAGAAACTATAATGAAGGGGCTCTCCATCAT  600

seq1  GATTTAGCTTTTTCATAGTTATTTATTGAGTGTGGATGTGAGTGCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGCTTTTTCATAGTTATTTATTGAGTGTGGATGTGAGTGCATATT  650

seq1  CTTTATTCAATGTGAACAAAGGATTATATAATTAGAGACTATCATGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAATGTGAACAAAGGATTATATAATTAGAGACTATCATGAGAA  700

seq1  TAGCCAGGGAGAGAAGGTCATTGGATGAAGGCTAAGGCTATTGAGATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGGAGAGAAGGTCATTGGATGAAGGCTAAGGCTATTGAGATGCC  750

seq1  TCATTAGTGTGAACAGGCAGTCTAGGTGTTATGTTTCAGACTGATTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTGTGAACAGGCAGTCTAGGTGTTATGTTTCAGACTGATTGTCT  800

seq1  GTAGTCACCCCAGTTGAAGGTCATGATCCAGGTGTATACATT-GGCTCAG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGTCACCCCAGTTGAAGGTCATGATCCAGGTGTATACATTGGGCTCAG  850

seq1  AGATGGCATCTTCATG-TTAACTAGGCCTATACACATCAGTTATCAGTCT  898
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AGATGGCATCTTCATGTTTAACTAGGCCTATACACATCAGTAATCAGTCT  900

seq1  AGACAATGTAGTTATCCAAATGGTTCATCTGTTAGTGGCGATTCTCAGTT  948
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AGACAATGTAGTTATC--AATGGTTCATCTGTTAGTGGCGATTCTCAGTT  948

seq1  GATGCTCCAGTATGTGCCAGTTTGGCATAAAACTAAGTAGCAGGAATGCC  998
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  GATGCTTCAGTATGTGCCAGTTTGGC-TAAAACTAAGTAGCAGGAATGCC  997

seq1  ATTGACAAACCACAAGCTGGAAGATCCCAGAATACATCTTAATGATGAAA  1048
      |||||| |||| ||  ||||||||||||   |||||||| ||||||||||
seq2  ATTGAC-AACCCCAGTCTGGAAGATCCC--GATACATCTAAATGATGAAA  1044

seq1  TTA-TAAAAGTGTGC  1062
      ||| |||||||||||
seq2  TTATTAAAAGTGTGC  1059

seq1: chr5_80683967_80684868
seq2: B6Ng01-124F24.g_69_972 (reverse)

seq1  CTGTCTTTCCCCAGGTATCCTTCTTCAGCATCCCAAATGAT-CAATCATT  49
      ||||||||||||| ||||||||||||||||||||||  ||| |||||| |
seq2  CTGTCTTTCCCCA-GTATCCTTCTTCAGCATCCCAATAGATCCAATCA-T  48

seq1  TTGGATATAGATAATAAATATGTCAACACTCATTTTGAAGTGTTACATTT  99
      |||||||||||| ||||||| ||||||| | |||||||| ||||||||||
seq2  TTGGATATAGAT-ATAAATA-GTCAACAATTATTTTGAA-TGTTACATTT  95

seq1  TCATGGCACTCTTCGTGGTCGGAAGCGTTTCTT-AAATA-TCGGCTATTG  147
      ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
seq2  TCATGGCACTCTTCGTGGTCGAAAGCGTTTCTTAAAATATTCGGCTATTG  145

seq1  AAATGCTGATTTCATAAACCT-CCACTCCTCCAGCCGTACATCTGGGGAA  196
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGGCTGATTTCATAAACCTCCCACTCCTCCAGCCGTACATCTGGGGAA  195

seq1  AGGGAGATAATTGCTGCGTGTGCTAATCTCATCCTCAGAGCTTTTCACAC  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAT-ATTGCTGCGTGTGCTAATCTCATCCTCAGAGCTTTTCACAC  244

seq1  ATCAAGAGC-AAGGCCACAGTTTCCTCATTAGTGTAGCGAGCACCTGTCT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGCAAAGGCCACAGTTTCCTCATTAGTGTAGCGAGCACCTGTCT  294

seq1  GCACCTCGTGATTTCAGAG-ACTGTGGGAGAGTTTTGCTGGTTCTCCACA  344
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCACCTCGTGATTTCAGAGAACTGTGGGAGAGTTTTGCTGGTTCTCCACA  344

seq1  AATCTTTTCTCATGTCTGTAATTCC-TTTAATTGGAACTCATTCCTGCAT  393
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATCTTTTCTCATGTCTGTAATTCCTTTTAATTGGAACTCATTCCTGCAT  394

seq1  GAGAAATGACATCATTTCCTAACAAAA-GGACTTAAAATTGGAAGGAAAT  442
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGAAATGACATCATTTCCTAACAAAAGGGACTTAAAATTGGAAGGAAAT  444

seq1  AAAAAGCAGAGGAATCATCAACACTATGAATCTACAGACAAGACGTAATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAGAGGAATCATCAACACTATGAATCTACAGACAAGACGTAATA  494

seq1  ACAAAAGACTTTGTATCATAGGCAGACAATCTCAATAGGAAAGGAGAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGACTTTGTATCATAGGCAGACAATCTCAATAGGAAAGGAGAAAT  544

seq1  AGAGAACAGTAAGGGACATTTTTGCCCTTTTCCTTTGTTTTGTTTTATTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGTAAGGGACATTTTTGCCCTTTTCCTTTGTTTTGTTTTATTT  594

seq1  ACTTTTGCATTCTTAATTTAGCTTTATGCTCACTTATTACTCTGCCAAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCATTCTTAATTTAGCTTTATGCTCACTTATTACTCTGCCAAAT  644

seq1  ATACCATTGAGGACAATTAAATGCTATTTAATATTAATTAGGGGTTTGGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTGAGGACAATTAAATGCTATTTAATATTAATTAGGGGTTTGGT  694

seq1  GACTTATTTTAATTAAAATTGAAAATTCTTGAAAATTTATTGTCATAATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTTTAATTAAAATTGAAAATTCTTGAAAATTTATTGTCATAATT  744

seq1  AAACTAGATAACATTTGATATTTCTTCCAAGGTATATCAAGGATATATAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGATAACATTTGATATTTCTTCCAAGGTATATCAAGGATATATAG  794

seq1  TTTCAGAAAATATGCAACCATGTTTTAAATAACTGAATAACTTTGTGACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAATATGCAACCATGTTTTAAATAACTGAATAACTTTGTGACA  844

seq1  AGTGTTACCCTGCTGAAGAATTTGCAAAATCTGTGATCAAACTTCCTGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACCCTGCTGAAGAATTTGCAAAATCTGTGATCAAACTTCCTGTT  894

seq1  CCATGAATTC  902
      ||||||||||
seq2  CCATGAATTC  904