BAC Information

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BAC

Clone NameB6Ng01-125E10
Chromosome5 (Build37)
Map Location 67,380,517 - 67,513,771
singlet/doubletdoublet
Overlap gene3732412D22Rik, Phox2b
Upstream gene9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, LOC624662
Downstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125E10.bB6Ng01-125E10.g
ACCDH927957DH927958
length1,1711,111
definitionDH927957|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E10, 5' end.DH927958|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,512,582 - 67,513,771)(67,380,517 - 67,381,642)
sequence
gaattctaggctggcctgggttatgtagtgtcctacttagggtattattg
ctgtgatgaaacaccatgaccaaaagcaagttggggataaagggattaat
ttggcttatactgttcctcactgaaggaggtcagggcaggaactgagaaa
gggcaggcacttggatacagcaggtttgtctactggcttgctccccttgg
cttgcttagcctgctttactgtagaacccaagaccaccagcccagggttc
tggacaccaccctcaacgaactggaccatcctccgtcaatctctaattaa
gaaaatgccttacagcctgatcttatggagccattttcttcattgagatt
ccctccttttagatggctctaacttgtcatgttgacataaaactagccag
cgtgcatagcaagaacccatctcaaaaaaaaaaaaaaaaaaaggaggtaa
ataaaattctataattcaaccatcaggatctaggagcatatctaagtcat
ataaatttagtaggtttatgtgtgtttaattaaaatgtatgctgtacttt
attttcagataaaaataaaggattatttaataagtgaaatctttttgcaa
acacattttcatctcagtcgtctttactcttttgtaaacagctcaaatcc
attgctatctttgtgtgtgtgtgctaaaacatatagagcaaaatgtaaaa
agacccactctagaacatttgtgaccttacctttatcaagaattgattgg
aggagcaagcaggcctggaggcagagggatggattcaatgacttcttgag
gtccttggcaatgagctatgtctaggattataattatgactatgtttatt
tattaacatttctactgggccattttagttgattagcacaatgcaattac
acaaaaaaatatgcagctacaagttctgggaagtctctacattgctagga
aagtctagatatgatatcatttctgattttcatgatttaataaataaaca
gcaaacaatagtctcggtttatttataataatgatgggactacatctaat
gctgaaagtacggcatgagagtagtaatctcagttctggctaatgactcc
tgggcttgttcccgttacctaacaaaagagacacattttgttaggtagga
ctgcaatgggacatcattcgg
gaattctcttaagctcattgtgaaacagaaagtactagtgctcagcttct
cagaagcctttgatgatactgggtccagggtacaatagaggccaggaatt
aataatcctacattttgaagatcagtaccctagccatcgttatcagctga
atcggacagtttctatctttttggattacagtgatgcccagggagcagac
aatagccatgcttcacaccatagatgtagagtagattatcttgtgtcctc
ttcagtgtgtgtctggtccctctctagctcacctctggaaaaatcacagc
taggctgagtggatatttgctcgtttcacacatgggaagtgccataggaa
gaaaagttatgtgttgaatcccaggcggttcccagattgaggctagttaa
ggacaaagggactgggtggtcaacctcgccctctattgtcaactcacctt
ccggatgtcccgagcctgataccttactctggatctgtaggctgttgtgg
agcaagccagagtggcaggaaggaaggaggcagggcctggagcctgggca
cggcatgcttcctgggtgcattcctgtttttcgagacctttgggagtatg
gatttccattgcagttgggaaaccaaactttagtacacagcccagaatta
aagcaccaagattttagacttagctctgagaggaaaaccactttacccct
tcaaggcattgcctgtacaagtcacaagaggagtcacggagaaagacctg
cttgaattcatactgctttccatctgccagtcatttgtagtcatattagg
atagtcagtgtaagtgaagagagccattaactttatgacatacttctttt
tcaaaatatttggtctgtgtatgtgtgtgtgtttctgtgcttgtgtgcat
ctgtgcatgtgagaaaggagagggagagaatgcccacgtgccagagagtc
aagagcagctgtggtagttgatgggtccttctctttgtcagttataaaaa
cgcaagtcatcattgcttggttgacgcccctttactgcttggcatctcca
gcccaggaatatacttctgattgagccaaacacgccctgagaattttgtt
tctttttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67512582_67513771
seq2: B6Ng01-125E10.b_50_1220 (reverse)

seq1  CCGAATGATGTCCCCATTGCAGCTCCTTCACCTTAACAAAATGTGTCTCT  50
      ||||||||||| |||||||||| ||||  ||| |||||||||||||||||
seq2  CCGAATGATGT-CCCATTGCAG-TCCT--ACC-TAACAAAATGTGTCTCT  45

seq1  TTTGTTTGGTGAACAGAGACAGGCCCAAGGAGTCATTAGCCAAGAACTTG  100
      |||||| ||| ||| |  ||| |||| |||||||||||||| ||||| ||
seq2  TTTGTTAGGT-AACGGGAACAAGCCC-AGGAGTCATTAGCC-AGAAC-TG  91

seq1  AGATTACTAACTCTCATTGCCCCTACTTTCAGCAATTAGATGTAGTTCCT  150
      |||||||| ||||||||   || |||||||||| ||||||||||||  | 
seq2  AGATTACT-ACTCTCAT--GCCGTACTTTCAGC-ATTAGATGTAGT--CC  135

seq1  CATCA-TATTATAAAATATACCGAGACTATTGTATGCTTGTTTATTTTAA  199
      ||||| |||||| ||||| |||||||||||||| ||| |||||||||  |
seq2  CATCATTATTAT-AAATAAACCGAGACTATTGTTTGC-TGTTTATTT--A  181

seq1  TTAAATCATTGAAAATCAGAAATGATATCATATCTAGACTTTCCTAGCAA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCA-TGAAAATCAGAAATGATATCATATCTAGACTTTCCTAGCAA  230

seq1  TGTAGAGACTTCCCAGAACTTGTAGCTGCATATTTTTTTGTGTAATTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACTTCCCAGAACTTGTAGCTGCATATTTTTTTGTGTAATTGCA  280

seq1  TTGTGCTAATCAACTAAAATGGCCCAGTAGAAATGTTAATAAATAAACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTAATCAACTAAAATGGCCCAGTAGAAATGTTAATAAATAAACAT  330

seq1  AGTCATAATTATAATCCTAGACATAGCTCATTGCCAAGGACCTCAAGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAATTATAATCCTAGACATAGCTCATTGCCAAGGACCTCAAGAAG  380

seq1  TCATTGAATCCATCCCTCTGCCTCCAGGCCTGCTTGCTCCTCCAATCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAATCCATCCCTCTGCCTCCAGGCCTGCTTGCTCCTCCAATCAAT  430

seq1  TCTTGATAAAGGTAAGGTCACAAATGTTCTAGAGTGGGTCTTTTTACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAAAGGTAAGGTCACAAATGTTCTAGAGTGGGTCTTTTTACATT  480

seq1  TTGCTCTATATGTTTTAGCACACACACACAAAGATAGCAATGGATTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTATATGTTTTAGCACACACACACAAAGATAGCAATGGATTTGAG  530

seq1  CTGTTTACAAAAGAGTAAAGACGACTGAGATGAAAATGTGTTTGCAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACAAAAGAGTAAAGACGACTGAGATGAAAATGTGTTTGCAAAAA  580

seq1  GATTTCACTTATTAAATAATCCTTTATTTTTATCTGAAAATAAAGTACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTTATTAAATAATCCTTTATTTTTATCTGAAAATAAAGTACAG  630

seq1  CATACATTTTAATTAAACACACATAAACCTACTAAATTTATATGACTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTTAATTAAACACACATAAACCTACTAAATTTATATGACTTAG  680

seq1  ATATGCTCCTAGATCCTGATGGTTGAATTATAGAATTTTATTTACCTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCCTAGATCCTGATGGTTGAATTATAGAATTTTATTTACCTCCT  730

seq1  TTTTTTTTTTTTTTTTTTGAGATGGGTTCTTGCTATGCACGCTGGCTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGAGATGGGTTCTTGCTATGCACGCTGGCTAGT  780

seq1  TTTATGTCAACATGACAAGTTAGAGCCATCTAAAAGGAGGGAATCTCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCAACATGACAAGTTAGAGCCATCTAAAAGGAGGGAATCTCAAT  830

seq1  GAAGAAAATGGCTCCATAAGATCAGGCTGTAAGGCATTTTCTTAATTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGGCTCCATAAGATCAGGCTGTAAGGCATTTTCTTAATTAGA  880

seq1  GATTGACGGAGGATGGTCCAGTTCGTTGAGGGTGGTGTCCAGAACCCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACGGAGGATGGTCCAGTTCGTTGAGGGTGGTGTCCAGAACCCTGG  930

seq1  GCTGGTGGTCTTGGGTTCTACAGTAAAGCAGGCTAAGCAAGCCAAGGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGTCTTGGGTTCTACAGTAAAGCAGGCTAAGCAAGCCAAGGGGA  980

seq1  GCAAGCCAGTAGACAAACCTGCTGTATCCAAGTGCCTGCCCTTTCTCAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTAGACAAACCTGCTGTATCCAAGTGCCTGCCCTTTCTCAGT  1030

seq1  TCCTGCCCTGACCTCCTTCAGTGAGGAACAGTATAAGCCAAATTAATCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCTGACCTCCTTCAGTGAGGAACAGTATAAGCCAAATTAATCCC  1080

seq1  TTTATCCCCAACTTGCTTTTGGTCATGGTGTTTCATCACAGCAATAATAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCCAACTTGCTTTTGGTCATGGTGTTTCATCACAGCAATAATAC  1130

seq1  CCTAAGTAGGACACTACATAACCCAGGCCAGCCTAGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTAGGACACTACATAACCCAGGCCAGCCTAGAATTC  1171

seq1: chr5_67380517_67381642
seq2: B6Ng01-125E10.g_67_1177

seq1  GAATTCTCTTAAGCTCATTGTGAAACAGAAAGTACTAGTGCTCAGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAGCTCATTGTGAAACAGAAAGTACTAGTGCTCAGCTTCT  50

seq1  CAGAAGCCTTTGATGATACTGGGTCCAGGGTACAATAGAGGCCAGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCTTTGATGATACTGGGTCCAGGGTACAATAGAGGCCAGGAATT  100

seq1  AATAATCCTACATTTTGAAGATCAGTACCCTAGCCATCGTTATCAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCTACATTTTGAAGATCAGTACCCTAGCCATCGTTATCAGCTGA  150

seq1  ATCGGACAGTTTCTATCTTTTTGGATTACAGTGATGCCCAGGGAGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGACAGTTTCTATCTTTTTGGATTACAGTGATGCCCAGGGAGCAGAC  200

seq1  AATAGCCATGCTTCACACCATAGATGTAGAGTAGATTATCTTGTGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCATGCTTCACACCATAGATGTAGAGTAGATTATCTTGTGTCCTC  250

seq1  TTCAGTGTGTGTCTGGTCCCTCTCTAGCTCACCTCTGGAAAAATCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGTGTCTGGTCCCTCTCTAGCTCACCTCTGGAAAAATCACAGC  300

seq1  TAGGCTGAGTGGATATTTGCTCGTTTCACACATGGGAAGTGCCATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAGTGGATATTTGCTCGTTTCACACATGGGAAGTGCCATAGGAA  350

seq1  GAAAAGTTATGTGTTGAATCCCAGGCGGTTCCCAGATTGAGGCTAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTATGTGTTGAATCCCAGGCGGTTCCCAGATTGAGGCTAGTTAA  400

seq1  GGACAAAGGGACTGGGTGGTCAACCTCGCCCTCTATTGTCAACTCACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGGGACTGGGTGGTCAACCTCGCCCTCTATTGTCAACTCACCTT  450

seq1  CCGGATGTCCCGAGCCTGATACCTTACTCTGGATCTGTAGGCTGTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGTCCCGAGCCTGATACCTTACTCTGGATCTGTAGGCTGTTGTGG  500

seq1  AGCAAGCCAGAGTGGCAGGAAGGAAGGAGGCAGGGCCTGGAGCCTGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGAGTGGCAGGAAGGAAGGAGGCAGGGCCTGGAGCCTGGGCA  550

seq1  CGGCATGCTTCCTGGGTGCATTCCTGTTTTTCGAGACCTTTGGGAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGCTTCCTGGGTGCATTCCTGTTTTTCGAGACCTTTGGGAGTATG  600

seq1  GATTTCCATTGCAGTTGGGAAACCAAACTTTAGTACACAGCCCAGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCATTGCAGTTGGGAAACCAAACTTTAGTACACAGCCCAGAATTA  650

seq1  AAGCACCAAGATTTTAGACTTAGCTCTGAGAGGAAAACCACTTTACCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAAGATTTTAGACTTAGCTCTGAGAGGAAAACCACTTTACCCCT  700

seq1  TCAAGGCATTGCCTGTACAAGTCACAAGAGGAGTCACGGAGAAAGACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCATTGCCTGTACAAGTCACAAGAGGAGTCACGGAGAAAGACCTG  750

seq1  CTTGAATTCATACTGCTTTCCATCTGCCAGTCATTTGTAGTTCATATTAG  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGAATTCATACTGCTTTCCATCTGCCAGTCATTTGTAG-TCATATTAG  799

seq1  GATAGTCAGTGTAAGTGAAGAGAGCCATTAACTTTATGACATACTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCAGTGTAAGTGAAGAGAGCCATTAACTTTATGACATACTTCTTT  849

seq1  TTCAAAAATATTTGGTCTGTGTATGTGTGTGTGTTTCTGTGCTTGTGTGC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-AAAATATTTGGTCTGTGTATGTGTGTGTGTTTCTGTGCTTGTGTGC  898

seq1  ATCTGTGCATGTGAGAAAGGGAGAGGGAGAGAATGCCCACGTGCCAGGAG  950
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  ATCTGTGCATGTGAGAAA-GGAGAGGGAGAGAATGCCCACGTGCCA-GAG  946

seq1  AGGTCAAAGAGCAGCCTGTGGTAGTTGGATGGGTCCTTCTCCTATGTCAG  1000
      | ||| |||||||| ||||||||||| ||||||||||||| || ||||||
seq2  A-GTC-AAGAGCAG-CTGTGGTAGTT-GATGGGTCCTTCT-CTTTGTCAG  991

seq1  TTATAGAAAACGCAGGTCATCA-TGCTTGGTTGAACGCCCCTTTACCTGC  1049
      ||||| |||||||| ||||||| |||||||||| ||||||||||| ||||
seq2  TTATA-AAAACGCAAGTCATCATTGCTTGGTTG-ACGCCCCTTTA-CTGC  1038

seq1  TGAGCCATCTCCCAGCCCAGG-ATATACTTCTTGATTGAGCCAACACACG  1098
      |  | ||||| |||||||||| ||||||||| |||||||||||| |||||
seq2  T-TGGCATCT-CCAGCCCAGGAATATACTTC-TGATTGAGCCAA-ACACG  1084

seq1  CCCTGAGAATTTGTGTTTCCTTTTAACA  1126
      |||||||||||| |||||| ||||||||
seq2  CCCTGAGAATTT-TGTTTCTTTTTAACA  1111