BAC Information

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BAC

Clone NameB6Ng01-125M04
Chromosome5 (Build37)
Map Location 138,238,783 - 138,239,740
singlet/doubletsinglet
Overlap geneZcwpw1
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3
Downstream genePilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M04.bB6Ng01-125M04.g
ACCDH928305DH928306
length9731,148
definitionDH928305|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M04, 5' end.DH928306|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgattcttctgcctctgtcttcctagttttgagattacagatg
tgcgccaccatgctgcaatgccagaatgttttgatgagagcatttagcta
gaaataatgggataagagtgggacaaagatgagagcaggaatggacagag
agtttataaacagtttccatttgctgcccctctatccccaggagctctgg
gtaaactttatggactcctgttgacttaaaacctgtagttttgttcattt
actacttcgtgtaagcaaggctcccctgacttgtcagaagtgagaaactg
tgaaaagacaaacaattctcctttcttactcttgtctctgtaggaaagaa
ctcttaccagtgcagaatttgaggagattttccagattgtactacagaag
tccctgcaggagtgcttgggtatggcctggcgtgaagaaagggcttcatt
agacagagtggctgtcatctaaggggtagtataagtcccacagcttcttc
ctctgctgtcttcctgagaaaatactaaatgatacttgaaatatttaacc
tgtagatgaaccatgttagagaaaagtgaaagaagactttgggaaaagta
gatgatgctaactttagaatcaacacagcctcacctgagtttttcaaatg
caattttaatttactcagatgtttgcaatctacttagaaaagataatatt
ccccaggtttggagaatgtattttatgtgtatagatctgtatgtgtattt
aaattacattttatttatttttgttgtgttttgtgcgtgtgtgtgttttg
tgtgtgtgtacgtgctcgagccatgctatggttatgtgtacaggtgagag
gacagcttgcagacattgcttgcctccttctactaagtgggtcttgggga
tggaactcaggttttcaggcactgagctgtctatggggctagggttatat
attttctatatgggtattccttt
gaattctctaacttgacactatccttcttatctacatactttttatttta
ttttattttattttattttattttattttatttcttagctcactgtgcta
gctgtaggctccaatacaatgctgaacttcactttaaaagcatataaact
ttaatctttcacaattgggcccaatttattttattttattaaagattttt
atttatttacttacaatctacacattgtccccttcctggtccctcctccc
acagttcctcatcccattcctcctccccctctccctatgagggtgctccc
ccactaccaggccttgcccctccctgaggcctcaaacttctcaaggatta
ggcacattttctcccaccaaggccagaccaggcaatcctctgctatatat
gtgtctggggcctcagaccagcttgtgtatgctgcctggttggtggctta
gtctctgggagctcccaggggtctagattagttgagactgttggtattca
tatgagatcaccctcctcagcttccatccttccccttactcaaccacagg
ggtcctagacttcaatccaatggttgggtgtaagtatctgcttctgtctc
agtcagctgctggttgggcctctcagaggacagccctgctaggctcctgt
ctgtaagcacatcctagcatcagtaataatgtcaggccttggtgtctcca
atgaggtggatccccagttgggtgggtaactggattgcctttccctcagt
cttttctccctttttgtccctgcattcttttaggcaagaacaattctagg
tcagagttttttgctgtgggtggtaacaccatccctcctattgaggatct
gtatatctaatggaggtgggctcttcaagttccctctccctatgtcgggc
attttctctaagtcctctgtttgagtctgagagtctctcacttcccagtc
tctggtactgtctagagagtctctactctacttctgagtctgcacattca
ttctctatggcctctgggctctcctgcacctcatactgatctatttcctt
acctccctactcctacctgattccctcccttgctgcgaatatttcctttc
cacaggtcctagactggggaatgtccttgaatgatgggcactctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138238783_138239740
seq2: B6Ng01-125M04.b_49_1003

seq1  GAATTCCTGATTCTTCTGCCTCTGTCTTCCTAGTTTTGAGATTACAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCTTCTGCCTCTGTCTTCCTAGTTTTGAGATTACAGATG  50

seq1  TGCGCCACCATGCTGCAATGCCAGAATGTTTTGATGAGAGCATTTAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCACCATGCTGCAATGCCAGAATGTTTTGATGAGAGCATTTAGCTA  100

seq1  GAAATAATGGGATAAGAGTGGGACAAAGATGAGAGCAGGAATGGACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGGGATAAGAGTGGGACAAAGATGAGAGCAGGAATGGACAGAG  150

seq1  AGTTTATAAACAGTTTCCATTTGCTGCCCCTCTATCCCCAGGAGCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAACAGTTTCCATTTGCTGCCCCTCTATCCCCAGGAGCTCTGG  200

seq1  GTAAACTTTATGGACTCCTGTTGACTTAAAACCTGTAGTTTTGTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTATGGACTCCTGTTGACTTAAAACCTGTAGTTTTGTTCATTT  250

seq1  ACTACTTCGTGTAAGCAAGGCTCCCCTGACTTGTCAGAAGTGAGAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCGTGTAAGCAAGGCTCCCCTGACTTGTCAGAAGTGAGAAACTG  300

seq1  TGAAAAGACAAACAATTCTCCTTTCTTACTCTTGTCTCTGTAGGAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGACAAACAATTCTCCTTTCTTACTCTTGTCTCTGTAGGAAAGAA  350

seq1  CTCTTACCAGTGCAGAATTTGAGGAGATTTTCCAGATTGTACTACAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCAGTGCAGAATTTGAGGAGATTTTCCAGATTGTACTACAGAAG  400

seq1  TCCCTGCAGGAGTGCTTGGGTATGGCCTGGCGTGAAGAAAGGGCTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAGGAGTGCTTGGGTATGGCCTGGCGTGAAGAAAGGGCTTCATT  450

seq1  AGACAGAGTGGCTGTCATCTAAGGGGTAGTATAAGTCCCACAGCTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTGGCTGTCATCTAAGGGGTAGTATAAGTCCCACAGCTTCTTC  500

seq1  CTCTGCTGTCTTCCTGAGAAAATACTAAATGATACTTGAAATATTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTCTTCCTGAGAAAATACTAAATGATACTTGAAATATTTAACC  550

seq1  TGTAGATGAACCATGTTAGAGAAAAGTGAAAGAAGACTTTGGGAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGAACCATGTTAGAGAAAAGTGAAAGAAGACTTTGGGAAAAGTA  600

seq1  GATGATGCTAACTTTAGAATCAACACAGCCTCACCTGAGTTTTTCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCTAACTTTAGAATCAACACAGCCTCACCTGAGTTTTTCAAATG  650

seq1  CAATTTTAATTTACTCAGATGTTTGCAATCTACTTAGAAAAGATAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAATTTACTCAGATGTTTGCAATCTACTTAGAAAAGATAATATT  700

seq1  CCCCAGGTTTGGAGAATGTATTTTATGTGTATAGATCTGTATGTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTTTGGAGAATGTATTTTATGTGTATAGATCTGTATGTGTATTT  750

seq1  AAATTACATTTTATTTATTTTTGTTGTGTTTTGTGCGTGTGTGTGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATTTTATTTATTTTTGTTGTGTTTTGTGCGTGTGTGTGTTTTG  800

seq1  TGTGTGTGTACGTGCTCGAGCCATGCTATGGTTTATGTGTACAGGTGAGA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTGTGTGTACGTGCTCGAGCCATGCTATGG-TTATGTGTACAGGTGAGA  849

seq1  GGACAGCTTGCAGACATTGCTTGCCTCCTTCTACTAAGTGGGTCTTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTTGCAGACATTGCTTGCCTCCTTCTACTAAGTGGGTCTTGGGG  899

seq1  ATTGAACTCAGGTTTTCAGGCACTGAGCTGTCTTATGGGGCCAAGGTTTA  950
      || ||||||||||||||||||||||||||||| ||||||| | ||| |||
seq2  ATGGAACTCAGGTTTTCAGGCACTGAGCTGTC-TATGGGG-CTAGGGTTA  947

seq1  TATATTTT  958
      ||||||||
seq2  TATATTTT  955