BAC Information

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BAC

Clone NameB6Ng01-127B04
Chromosome5 (Build37)
Map Location 72,455,379 - 72,556,674
singlet/doubletdoublet
Overlap geneGabrb1, Commd8
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4, LOC666545
Downstream geneAtp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B04.bB6Ng01-127B04.g
ACCDH929285DH929286
length930862
definitionDH929285|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B04, 5' end.DH929286|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,556,051 - 72,556,674)(72,455,379 - 72,456,244)
sequence
gaattcagctgagtggaagcatgttctcgaagatgttaccacgtttttca
aagcggtcgttggcaaaaacttctctgaggaagaggtagtttcagtcctg
acctctttacctgataataagtatcatccagaggttctaatgatgttcat
agggttctacccatgtgttcagtagctgatcacatgctacagcagccgaa
ggtctaatcgtgagtgagtggaagaccacattggattttctgggacatgg
cagttttgtcttagttgttttgtttttttttttttttttttttttttctc
ccactgtaacactttgaaagcatagcggtgaatgcaggatgctgaaaaaa
gcctgagtgttctggttgtagtgattagactctagcttacattggatctc
atggaaagtggcttttaccactttgccaagaactatttgcacatatttat
gagttgattactttagtagatggtgttttatgtatctgtcgtgttgattt
agatgataactctagatttgcatttctttgaatatatacatttaatctgt
catgtcccttgctttttcattctcttaataggacttttggggaacagaag
ttctgaggttaatgcagtccagtttgccagtctttcttttggcgggtagt
gctgtctctgtcgtatttaagaaatatgaaggtatctatctttgtgtgtt
tccctgtagaggcttgattgttttagcttctgtaatctactctcagaaat
gtttggaattagtattttgcgtgagacaggggccgtctcagtttcctctg
cacagtttcccactgactcactgccatctattggacatattattggctgt
ccttgctcacaggctgccgttgcagcgttggtaataaatcagatgggcgg
gcatgtgtggggtctgtcttctggactctc
gaattcttatttccctttaagatcttgttacattgactgacacaggaagg
accacctaatttgtccaaatatagttacatgaggtacaaccaaggcactg
gctattcctactctctgcagggaagtgctttgctttttttttttccccac
gaacagatgcagtgtaatcttgagaatccatttgttattttgctagtgga
gtctgtagctatgcagacatctgtgatgtgggataaggaagattattttt
cagaaatacaaagaatatagagagtagaaagattatttttaggatataaa
agtgtaagaaataaccttccccattgccaatatgtttttcaagctcttgg
tttcaggagtgctacagtccagtcttaattttttccacacatttggtttt
ataaaataaaattggagtccaaccttctactatatctaaggaaataattt
catgtagcaagatagatgactctgcccacattaataatacaagattcctc
tgttcctgggttctaatgatagaattcagtaatgtactggtagaagtggc
tgtgcaaataaaaccttgtttcagagatattttctgttaggaacttggtt
atgcactcctgtggaacaaaccgtatgtgtcactgcgagtctaacaaata
gcacccttcctaatttactgcataaaatcaccattacaatcggtagtctg
ctacatttcttttcaatctaatttgaacactccaaaaaaaaaaaaaaacc
ttcacatacggtatgttttttggaaagcaaatgagctttaaattaaggat
ctattttcactttcatggtgagacactttgcagtgcaggctatgatcagg
agtcaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72556051_72556674
seq2: B6Ng01-127B04.b_48_671 (reverse)

seq1  AACTGGACTGCATTAACCTCAGAACTTCTGTTCCCCAAAAGTCCTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTGCATTAACCTCAGAACTTCTGTTCCCCAAAAGTCCTATTAA  50

seq1  GAGAATGAAAAAGCAAGGGACATGACAGATTAAATGTATATATTCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAAAAAGCAAGGGACATGACAGATTAAATGTATATATTCAAAGA  100

seq1  AATGCAAATCTAGAGTTATCATCTAAATCAACACGACAGATACATAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATCTAGAGTTATCATCTAAATCAACACGACAGATACATAAAAC  150

seq1  ACCATCTACTAAAGTAATCAACTCATAAATATGTGCAAATAGTTCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTACTAAAGTAATCAACTCATAAATATGTGCAAATAGTTCTTGGC  200

seq1  AAAGTGGTAAAAGCCACTTTCCATGAGATCCAATGTAAGCTAGAGTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTAAAAGCCACTTTCCATGAGATCCAATGTAAGCTAGAGTCTAA  250

seq1  TCACTACAACCAGAACACTCAGGCTTTCTTCAGCATCCTGCATTCACCGC  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCACTACAACCAGAACACTCAGGCTTTTTTCAGCATCCTGCATTCACCGC  300

seq1  TATGCTTTCAAAGTGTTACAGTGGGAGAAAAAAAAAAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTCAAAGTGTTACAGTGGGAGAAAAAAAAAAAAAAAAAAAAAAA  350

seq1  AACAAAACAACTAAGACAAAACTGCCATGTCCCAGAAAATCCAATGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAACTAAGACAAAACTGCCATGTCCCAGAAAATCCAATGTGGT  400

seq1  CTTCCACTCACTCACGATTAGACCTTCGGCTGCTGTAGCATGTGATCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTCACTCACGATTAGACCTTCGGCTGCTGTAGCATGTGATCAGC  450

seq1  TACTGAACACATGGGTAGAACCCTATGAACATCATTAGAACCTCTGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACACATGGGTAGAACCCTATGAACATCATTAGAACCTCTGGATG  500

seq1  ATACTTATTATCAGGTAAAGAGGTCAGGACTGAAACTACCTCTTCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTATCAGGTAAAGAGGTCAGGACTGAAACTACCTCTTCCTCAG  550

seq1  AGAAGTTTTTGCCAACGACCGCTTTGAAAAACGTGGTAACATCTTCGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTTTGCCAACGACCGCTTTGAAAAACGTGGTAACATCTTCGAGA  600

seq1  ACATGCTTCCACTCAGCTGAATTC  624
      ||||||||||||||||||||||||
seq2  ACATGCTTCCACTCAGCTGAATTC  624

seq1: chr5_72455379_72456244
seq2: B6Ng01-127B04.g_70_931

seq1  GAATTCTTATTTCCCTTTAAGATCTTGTTACATTGACTGACACAGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCCCTTTAAGATCTTGTTACATTGACTGACACAGGAAGG  50

seq1  ACCACCTAATTTGTCCAAATATAGTTACATGAGGTACAACCAAGGCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTAATTTGTCCAAATATAGTTACATGAGGTACAACCAAGGCACTG  100

seq1  GCTATTCCTACTCTCTGCAGGGAAGTGCTTTGCTTTTTTTTTTTCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTACTCTCTGCAGGGAAGTGCTTTGCTTTTTTTTTTTCCCCAC  150

seq1  GAACAGATGCAGTGTAATCTTGAGAATCCATTTGTTATTTTGCTAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATGCAGTGTAATCTTGAGAATCCATTTGTTATTTTGCTAGTGGA  200

seq1  GTCTGTAGCTATGCAGACATCTGTGATGTGGGATAAGGAAGATTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGCTATGCAGACATCTGTGATGTGGGATAAGGAAGATTATTTTT  250

seq1  CAGAAATACAAAGAATATAGAGAGTAGAAAGATTATTTTTAGGATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATACAAAGAATATAGAGAGTAGAAAGATTATTTTTAGGATATAAA  300

seq1  AGTGTAAGAAATAACCTTCCCCATTGCCAATATGTTTTTCAAGCTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGAAATAACCTTCCCCATTGCCAATATGTTTTTCAAGCTCTTGG  350

seq1  TTTCAGGAGTGCTACAGTCCAGTCTTAATTTTTTCCACACATTTGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGTGCTACAGTCCAGTCTTAATTTTTTCCACACATTTGGTTTT  400

seq1  ATAAAATAAAATTGGAGTCCAACCTTCTACTATATCTAAGGAAATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATTGGAGTCCAACCTTCTACTATATCTAAGGAAATAATTT  450

seq1  CATGTAGCAAGATAGATGACTCTGCCCACATTAATAATACAAGATTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCAAGATAGATGACTCTGCCCACATTAATAATACAAGATTCCTC  500

seq1  TGTTCCTGGGTTCTAATGATAGAATTCAGTAATGTACTGGTAGAAGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGGTTCTAATGATAGAATTCAGTAATGTACTGGTAGAAGTGGC  550

seq1  TGTGCAAATAAAACCTTGTTTCAGAGATATTTTCTGTTAGGAACTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAATAAAACCTTGTTTCAGAGATATTTTCTGTTAGGAACTTGGTT  600

seq1  ATGCACTCCTGTGGAACAAACCGTATGTGTCACTGCGAGTCTAACAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCCTGTGGAACAAACCGTATGTGTCACTGCGAGTCTAACAAATA  650

seq1  GCACCCTTCCTAATTTACTGCATAAAATCAACCATTACAATCGGTAGTCT  700
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCACCCTTCCTAATTTACTGCATAAAATC-ACCATTACAATCGGTAGTCT  699

seq1  GCTACATTTCTTTTCAATCTTAATTTGAACACTCCAAAAAAAAAAAAAAA  750
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GCTACATTTCTTTTCAATC-TAATTTGAACACTCC-AAAAAAAAAAAAAA  747

seq1  ACCTTCACATACGGTATGTTTTATGGAAAGCAAAATGAGCTTTAAATTAA  800
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  ACCTTCACATACGGTATGTTTTTTGGAAAGC-AAATGAGCTTTAAATTAA  796

seq1  GAATCTATATTCACTTTCAT-GTGAGACAACCTTGCAGTGCAGGCTATGA  849
      | |||||| ||||||||||| ||||||| || ||||||||||||||||||
seq2  GGATCTATTTTCACTTTCATGGTGAGAC-ACTTTGCAGTGCAGGCTATGA  845

seq1  TCA-GAGTCAAAATAAAA  866
      ||| ||||| ||||||||
seq2  TCAGGAGTC-AAATAAAA  862