BAC Information

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BAC

Clone NameB6Ng01-128F01
Chromosome5 (Build37)
Map Location 106,040,824 - 106,230,435
singlet/doubletdoublet
Overlap geneLrrc8d, LOC100042335
Upstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
Downstream geneD830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128F01.bB6Ng01-128F01.g
ACCDH930199DH930200
length1,031958
definitionDH930199|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F01, 5' end.DH930200|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,040,824 - 106,041,858)(106,229,465 - 106,230,435)
sequence
gaattctcaatgagataaactgtggtgtacatgagattcctcgaattgcc
cacccagcccttccttgctgctacaatgagctctgacagtctccgtggtg
tcctaagcagcaagcagactttttcaggctcttttggaaatgtccctgcc
tcagggaggttgttcattttgatcacaggccccactctgaagggtctgaa
acatggactcttccttgggtttcataaacaaaagaagtccagtttctttc
agtacgctggtttatggctttaatttatctcactctctaatccagttttc
ataccaaatactgatcaacggtattggcatttcagcagtaacacttatgg
atcatcaatacaaaagtccattaacacttctcatgcaaaccttgttgatg
tcacttcagtttttcataaagtaaattaagtctaccttaaagagtttaca
ctggggcagaatcttcaagaatgtcatactcaagtgaacaaaatggctac
cactgaggaaacttctagaagagtcgatgggatgtttgcaccttttctgt
ttagagacatggtaagaagtcccagtcttacctagagctgccatgagttt
tcagatttagctctcagtcttctgatatcagcctcccacacaagtatctg
ctcccatccagtccccttcccaaagtcgcccactaataaagatggcattc
ttaggattatctgagggagagagaagagagtctccctctgcccacaagga
attattttttaatcagaagggtatataacattggacagcttttattgacc
agatagcagccactatgtatttagggtttggtttggttttgagccaaacc
taggctgaccttaaacttgagagcctcttgccctcggcttcctggacact
ggattacaggtgtttactgcacacctggcctgcgtggtttatagttagat
tcgttgtgtcttcgtcccctgccacactgctctttgggttgacacccatg
ccttaatgtgctggctgtgtttgatttgcat
gaattcctacccctgtgaaagttccctttccagtgtttgttttcccttta
ctacccgggcaaacattaactttgctaaccaccatctcgctcacccaatc
gtaaaaccttaaagggtccttctctgtagtcgaaggggggagaaaagggt
gagttgtaattcccacctctcctccccaacacacacacacacacacacac
acacacacacacacacacacacacacacagaggagcagctctgtgaatat
cttataatgcagacagggtcaggctctcccaccaggccaaagtctctggg
aaggctaaacatccagagaactcaagttagatctcactggaaggaagaaa
gcatgaaaggaaatgtttgctctttctaaggggagtgtcagcaacagtgg
ccggatttactctatgtccttggtcacagtggggtcgggggtgggggaat
gaggcagatagactgcaggcatcttcacagggcaatcttcaattgttagc
cccctccccccaaaccactcccctccacctctaacggagccaagagtctc
atttagaacttggcatacttaggactttcttttaagtctgctttgcaaaa
taacatttcctaaattagtgtttctccatagacgaaccacgagagcccat
acacgttctctgctgcttagggaatggaaaagaaaatgaggattaagaga
aaatatttctacctgttgttttagttacgggcccctagttccgcaagcaa
tactttaccaggctgcgactatcacctctgcgccaaggctccttgctgtt
ctagtgctatagaggatcggtgccgcttaagtgtcttcagttgggaattc
gttaatgtcacatccaccggcataagaataagcggcctgatctgtacaag
ctctggagataatgggaggacatacgtcattacgggctcccctggatgct
gtcacgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106040824_106041858
seq2: B6Ng01-128F01.b_47_1077

seq1  GAATTCTCAATGAGATAAACTGTGGTGTACATGAGATTCCTCGAATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGAGATAAACTGTGGTGTACATGAGATTCCTCGAATTGCC  50

seq1  CACCCAGCCCTTCCTTGCTGCTACAATGAGCTCTGACAGTCTCCGTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCCTTCCTTGCTGCTACAATGAGCTCTGACAGTCTCCGTGGTG  100

seq1  TCCTAAGCAGCAAGCAGACTTTTTCAGGCTCTTTTGGAAATGTCCCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCAGCAAGCAGACTTTTTCAGGCTCTTTTGGAAATGTCCCTGCC  150

seq1  TCAGGGAGGTTGTTCATTTTGATCACAGGCCCCACTCTGAAGGGTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGTTGTTCATTTTGATCACAGGCCCCACTCTGAAGGGTCTGAA  200

seq1  ACATGGACTCTTCCTTGGGTTTCATAAACAAAAGAAGTCCAGTTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACTCTTCCTTGGGTTTCATAAACAAAAGAAGTCCAGTTTCTTTC  250

seq1  AGTACGCTGGTTTATGGCTTTAATTTATCTCACTCTCTAATCCAGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGCTGGTTTATGGCTTTAATTTATCTCACTCTCTAATCCAGTTTTC  300

seq1  ATACCAAATACTGATCAACGGTATTGGCATTTCAGCAGTAACACTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAATACTGATCAACGGTATTGGCATTTCAGCAGTAACACTTATGG  350

seq1  ATCATCAATACAAAAGTCCATTAACACTTCTCATGCAAACCTTGTTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATACAAAAGTCCATTAACACTTCTCATGCAAACCTTGTTGATG  400

seq1  TCACTTCAGTTTTTCATAAAGTAAATTAAGTCTACCTTAAAGAGTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGTTTTTCATAAAGTAAATTAAGTCTACCTTAAAGAGTTTACA  450

seq1  CTGGGGCAGAATCTTCAAGAATGTCATACTCAAGTGAACAAAATGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAGAATCTTCAAGAATGTCATACTCAAGTGAACAAAATGGCTAC  500

seq1  CACTGAGGAAACTTCTAGAAGAGTCGATGGGATGTTTGCACCTTTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGAAACTTCTAGAAGAGTCGATGGGATGTTTGCACCTTTTCTGT  550

seq1  TTAGAGACATGGTAAGAAGTCCCAGTCTTACCTAGAGCTGCCATGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACATGGTAAGAAGTCCCAGTCTTACCTAGAGCTGCCATGAGTTT  600

seq1  TCAGATTTAGCTCTCAGTCTTCTGATATCAGCCTCCCACACAAGTATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTAGCTCTCAGTCTTCTGATATCAGCCTCCCACACAAGTATCTG  650

seq1  CTCCCATCCAGTCCCCTTCCCAAAGTCGCCCACTAATAAAGATGGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCCAGTCCCCTTCCCAAAGTCGCCCACTAATAAAGATGGCATTC  700

seq1  TTAGGATTATCTGAGGGAGAGAGAAGAGAGTCTCCCTCTGCCCACAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTATCTGAGGGAGAGAGAAGAGAGTCTCCCTCTGCCCACAAGGA  750

seq1  ATTATTTTTTAATCAGAAGGGTATATAACATTGGACAGCTTTTATTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTAATCAGAAGGGTATATAACATTGGACAGCTTTTATTGACC  800

seq1  AGATAGCAGCCACTATGTATTTAGGGTTTGGTTTGGTTTTTGAGCCAAAC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGATAGCAGCCACTATGTATTTAGGGTTTGGTTTGG-TTTTGAGCCAAAC  849

seq1  CTAGGCTGACCTTAAACTTGAGAGCCTCTTGCCC-CGGCTTCCTGGACAC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAGGCTGACCTTAAACTTGAGAGCCTCTTGCCCTCGGCTTCCTGGACAC  899

seq1  TGGATTACAGGTGTTTACTGCACACCTGGCCTGCGTGGTTTATAGTTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACAGGTGTTTACTGCACACCTGGCCTGCGTGGTTTATAGTTAGA  949

seq1  TTCGTTTGTGTCTTCGGTCCCCTGCCACACTGCTCTTTGGGGTTGACACC  999
      |||| |||||||||| |||||||||||||||||||||| ||||||||| |
seq2  TTCG-TTGTGTCTTC-GTCCCCTGCCACACTGCTCTTT-GGGTTGACA-C  995

seq1  CCATGCCTT-ATGTGCTTGCTGGTGTTTGGTTTGCAT  1035
      ||||||||| ||||||| ||| ||||||| |||||||
seq2  CCATGCCTTAATGTGCTGGCT-GTGTTTGATTTGCAT  1031

seq1: chr5_106229465_106230435
seq2: B6Ng01-128F01.g_66_1023 (reverse)

seq1  GTCGATGACAGCATCCAGGGGAGGCCTGTAATTGACGTCTGTGCCTCCCT  50
      |||| ||||||||||||||||| ||| |||| |||||| ||| |||||| 
seq2  GTCG-TGACAGCATCCAGGGGA-GCCCGTAA-TGACGTATGT-CCTCCCA  46

seq1  GTCTCTCCATGTGCTTGTGCAAACTCAGGCCTGCTTTTTCTTCTGCCGGT  100
       | |||||| | |||||| || | ||||||| |||| ||||| |||||||
seq2  TTATCTCCA-GAGCTTGTACAGA-TCAGGCC-GCTTATTCTTATGCCGGT  93

seq1  GATTGTGACATTAGCGAATTCCCAACCTGAGTCACTTAAGCGGCACCGAC  150
      |  |||||||||| ||||||||||||   || ||||||||||||||||| 
seq2  GGATGTGACATTAACGAATTCCCAACTGAAGACACTTAAGCGGCACCGA-  142

seq1  TCCTCATATAGCACTGAGGACAGCAAGGAGCCTTGGGGCAGAGGTGATAG  200
      ||||| ||||||||| || ||||||||||||||||| |||||||||||||
seq2  TCCTC-TATAGCACT-AGAACAGCAAGGAGCCTTGGCGCAGAGGTGATAG  190

seq1  TTGCAGCCTGGTAAAGGATTGCTTGCGGAACCAGTGGCCCCGTAACTAAA  250
      | |||||||||||||| |||||||||||||| || || ||||||||||||
seq2  TCGCAGCCTGGTAAAGTATTGCTTGCGGAACTAG-GGGCCCGTAACTAAA  239

seq1  AGCAACAGGTAGAAATATTTTCTCTTAATACCTCATTTTCTTTTCCATTC  300
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  A-CAACAGGTAGAAATATTTTCTCTTAAT-CCTCATTTTCTTTTCCATTC  287

seq1  CCTAAGCAGCAGAGAACGTGTATGGGCTCTCGTGGTTCGTCTTTGGAGAA  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTAAGCAGCAGAGAACGTGTATGGGCTCTCGTGGTTCGTCTATGGAGAA  337

seq1  ACACTAATTTAGGAAATGTTATTTTGCAAAGCAGACTTAAAAGAAAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTTAGGAAATGTTATTTTGCAAAGCAGACTTAAAAGAAAGTCC  387

seq1  TAAGTATGCCAAGTTCTAAATGAGACTCTTGGCTCCCTTAGAGGTGGAGG  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGTATGCCAAGTTCTAAATGAGACTCTTGGCTCCGTTAGAGGTGGAGG  437

seq1  GGAGTGGTTTGGGGGGAGGGGGCTAACAATTGAAGATTGCCCTGTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGTTTGGGGGGAGGGGGCTAACAATTGAAGATTGCCCTGTGAAGA  487

seq1  TGCCTGCAGTCTATCTGCCTCATTCCCCCACCCCCGACCCCACTGTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGTCTATCTGCCTCATTCCCCCACCCCCGACCCCACTGTGACC  537

seq1  AAGGACATAGAGTAAATCCGGCCACTGTTGCTGACACTCCCCTTAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGAGTAAATCCGGCCACTGTTGCTGACACTCCCCTTAGAAAG  587

seq1  AGCAAACATTTCCTTTCATGCTTTCTTCCTTCCAGTGAGATCTAACTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATTTCCTTTCATGCTTTCTTCCTTCCAGTGAGATCTAACTTGA  637

seq1  GTTCTCTGGATGTTTAGCCTTCCCAGAGACTTTGGCCTGGTGGGAGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGGATGTTTAGCCTTCCCAGAGACTTTGGCCTGGTGGGAGAGCC  687

seq1  TGACCCTGTCTGCATTATAAGATATTCACAGAGCTGCTCCTCTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTCTGCATTATAAGATATTCACAGAGCTGCTCCTCTGTGTGTG  737

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGAG  787

seq1  GAGAGGTGGGAATTACAACTCACCCTTTTCTCCCCCCTTCGACTACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGGAATTACAACTCACCCTTTTCTCCCCCCTTCGACTACAGAG  837

seq1  AAGGACCCTTTAAGGTTTTACGATTGGGTGAGCGAGATGGTGGTTAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCTTTAAGGTTTTACGATTGGGTGAGCGAGATGGTGGTTAGCAA  887

seq1  AGTTAATGTTTGCCCGGGTAGTAAAGGGAAAACAAACACTGGAAAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGTTTGCCCGGGTAGTAAAGGGAAAACAAACACTGGAAAGGGAA  937

seq1  CTTTCACAGGGGTAGGAATTC  971
      |||||||||||||||||||||
seq2  CTTTCACAGGGGTAGGAATTC  958