BAC Information

Click to search

BAC

Clone NameB6Ng01-128F13
Chromosome8 (Build37)5 (Build37)
Map Location 10,190,029 - 10,190,70786,577,736 - 86,578,806
singlet/doubletsingletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128F13.bB6Ng01-128F13.g
ACCDH930221DH930222
length1,0101,059
definitionDH930221|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F13, 5' end.DH930222|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,190,029 - 10,190,707)(86,577,736 - 86,578,806)
sequence
gaattccatataggaaaactgtacttatataattttgaccccctccactc
cctctcctaacttcctgtgctcttccacactctgacaaattcaagacctc
ttctttagctttgttttacataatcacacacatatgcatacacacacata
cacatatacacacatgtacacacatgtacacacacacacactactaagtc
tatttagtgttctgcatttgctcatatgtttagaactgaccacttggggt
cacataacctaccaagtgttttatccatggagaaaattggttttccctct
ctcagaagtcattgattggctataggttttcatctaagagagggacttca
taaaaatatctccctatccaagattggatgttgaagtgcatggtcattat
gcagatcttctttaggcaaccatattgttgagatttctcaagtacagctt
ccctattaattctaaaagatactatcttgtaagagtcatcctggtcctct
ggctcttaaacttttccatgccctctcctgtgatttttcccctaacacta
ggatttccagggtagatgtttcaactgcggtttgggcacacacattcaca
cacccactgttattcattctctgcaagttggccagttgagatctctagaa
tagtctccatctgctgcaaaaggaagcttcttttatgaagggtaggagct
gcacttacctgttgatatactgataagtctttagaatacagccagaaatt
atattacttcaggaatatgggaatagtagtttctcctctagagtctatga
tatctctagtcacttgtagttagctaggtttacagtagcaggcatgaatt
ttttcatactgaacagtctagctggacaactgttggctacccactcccaa
gttatactgccgcacgttgtatcactggtctttatacctgggctttatag
ctaggcagagagagattgcttttctccttagcagcctgtatagcagctca
gatactatga
gaattctcattttaaatccttcgatttgaactttaaatattgaggttaag
agtagaacctttagaaacaatggttaatccattttaagttttgaatcatt
taccaaatcccatccatcactccattgcccctttcaagccttcaaagtaa
atatttacctcaggtttgctaaaatctgcaataaggcaccttggatgttt
tatctggctctccaggggttcctaagagaaaaaaaaaccattatttcaca
gtacattgagtgattattttgcaaaacatttagggcactggaagcaacag
atctttctctaaggctgaaaattggtgagggggaattgctgtaatgttat
agttaatcacataatgtagttaaaatgctctgtaatatctcattactaca
ctaaaaaccacttgtactacatagttacttcaaaaaaaattagtgaaaac
tatctttataatcccaaactttgtcctaatgtaaaagctaccatgtattc
tgatatcattaagtaactgagactagttatgcctgctaagtcttgggtag
atatttcaagctaaaatctgcgtgagtgtaaagtaagaatagaaagagat
cttgaaaaccccctatagcctgtagcataagcccaacaactaaagacatg
ttatacatctcacactgagaagcagcctgtcaatttaaataagactcatt
agttccaagaaaatagcattctctacactctatttatcagcatgtttttt
ttcatgcaatagtcaatgtgaatcaaactacttttcaaacatagtagtta
taatgcagattaaaattgcagtaacaggaattaacaaataattgagccat
aagtgtacagctcttgctgcataaatgaaaacactggtatcttttttttt
gggcagtaaaagtatgataaattccttcatatttagaggatatagcctcc
tttgagttatcccattctacaccagaaaaatcctagctattaaaccatat
aaacctgtatttgcctaaccttgcagtacgagattgcaccaactatgatg
ttgtaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_10190029_10190707
seq2: B6Ng01-128F13.b_167_644 (reverse)

seq1  TGTGTGAATGTGTGTGTCTGTGTGTGTGCGCGTGTGCTTGTGTGTGTATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGCACCTGTCTGTGTGTATATGTGTATGTGCTTGTGTGTGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCATGCTTGTGTGTGTATGTGTGTGTGTGCACCTGTCTGTGTGTATATG  150
                |||||| |||||||||     |||   | || || | |  
seq2  ----------TGTGTGAATGTGTGTGCCCAAACC--GCAGT-TG-AAACA  36

seq1  TGTATGTGCTTGTGTGTGTGTGCATGCTTGTGTGTGTATGTGTGTGTGTG  200
      | ||              ||   || || ||||   || | |        
seq2  TCTA-----------CCCTGGAAATCCTAGTGT---TAGGGGAAAAATCA  72

seq1  CACCTGTCTGTGTGTATATGTGTATGTGCTTGTGTGTGTGTGCATGCTTG  250
      ||   |   |  || | | || || | ||  | |     |  || |  ||
seq2  CAGGAGAGGGCATGGAAAAGTTTAAGAGCCAGAG-----GACCA-GGATG  116

seq1  TGTGTGTATGTGTGTGTGTGCACCTGTCTGTGTGTATATGTGTA--TGTG  298
        | | ||   |   ||    | || |  |  |  ||| | | |  ||| 
seq2  ACTCT-TACAAGATAGT----ATCTTTTAGAATTAATA-GGGAAGCTGTA  160

seq1  CTTGTG-TGTGTGTGCATGCTTGTGTGTGTATGTGTGTGTGCGCACCT--  345
      |||| |   | |   ||             || ||  ||      |||  
seq2  CTTGAGAAATCTCAACA-------------ATATGGTTG------CCTAA  191

seq1  -GTCTGTGTGTAT-ATGTGTATGTGCTTGTGTGTGTGTGCATGCTTATGT  393
       |    | || || |||   |||  |||     |     | ||  || | 
seq2  AGAAGATCTGCATAATGACCATGCACTTCAACATCCAATCTTGGATAGGG  241

seq1  ATGTATGTGTGTGTATGCACCTGTCTGTG-TGTATATGTGTATGTGCTTG  442
      |  ||| | | || | |  ||| |||  | || | |  | ||   ||   
seq2  AGATATTTTTATG-AAGTCCCTCTCTTAGATGAAAACCTATA---GC---  284

seq1  TGTGTGTGTGCATGCTTGTATGTGTATGTGTGTGTGTGTGTACC---TGT  489
                ||    |  |||  | | || | | | |   |||   | |
seq2  ----------CA---ATCAATGACT-TCTGAGAGAGGGAAAACCAATTTT  320

seq1  CTGTGTGTATATGTGTATGTGCCTGTTTGTGCCTGTGTATGTGTGTGCCT  539
      ||   || |||     |    | || | |       || | ||||  || 
seq2  CTCCATGGATA-----AAACACTTGGTAG-------GT-TATGTGACCCC  357

seq1  GTGTGTGTGCCTGTGTATACCTGTGTG--TGTGCA----CCTGTGTGTAC  583
        ||| || |   | || || | || |    ||||     ||   |  ||
seq2  AAGTG-GT-CAGTTCTAAACATATGAGCAAATGCAGAACACTAAATAGAC  405

seq1  CT-GT-GTGTGTGCCTGTGTGTACCTGTGTGTGTACCTTGTGTACCTGTA  631
       | || |||||||  ||||||||| |||||||    | ||||    ||||
seq2  TTAGTAGTGTGTG--TGTGTGTACATGTGTGT---ACATGTG----TGTA  446

seq1  TGTGTGCTTGTGTGTGTACCTTTGTGTATGTGTGTGTGCCTGTGTGTG  679
      | ||||  ||||||||||    ||  ||||||||||            
seq2  TATGTGTATGTGTGTGTA----TGCATATGTGTGTG------------  478

seq1: chr5_86577736_86578806
seq2: B6Ng01-128F13.g_69_1127

seq1  GAATTCTCATTTTAAATCCTTCGATTTGAACTTTAAATATTGAGGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTAAATCCTTCGATTTGAACTTTAAATATTGAGGTTAAG  50

seq1  AGTAGAACCTTTAGAAACAATGGTTAATCCATTTTAAGTTTTGAATCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACCTTTAGAAACAATGGTTAATCCATTTTAAGTTTTGAATCATT  100

seq1  TACCAAATCCCATCCATCACTCCATTGCCCCTTTCAAGCCTTCAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATCCCATCCATCACTCCATTGCCCCTTTCAAGCCTTCAAAGTAA  150

seq1  ATATTTACCTCAGGTTTGCTAAAATCTGCAATAAGGCACCTTGGATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACCTCAGGTTTGCTAAAATCTGCAATAAGGCACCTTGGATGTTT  200

seq1  TATCTGGCTCTCCAGGGGTTCCTAAGAGAAAAAAAAACCATTATTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCTCTCCAGGGGTTCCTAAGAGAAAAAAAAACCATTATTTCACA  250

seq1  GTACATTGAGTGATTATTTTGCAAAACATTTAGGGCACTGGAAGCAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGAGTGATTATTTTGCAAAACATTTAGGGCACTGGAAGCAACAG  300

seq1  ATCTTTCTCTAAGGCTGAAAATTGGTGAGGGGGAATTGCTGTAATGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCTAAGGCTGAAAATTGGTGAGGGGGAATTGCTGTAATGTTAT  350

seq1  AGTTAATCACATAATGTAGTTAAAATGCTCTGTAATATCTCATTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCACATAATGTAGTTAAAATGCTCTGTAATATCTCATTACTACA  400

seq1  CTAAAAACCACTTGTACTACATAGTTACTTCAAAAAAAATTAGTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACCACTTGTACTACATAGTTACTTCAAAAAAAATTAGTGAAAAC  450

seq1  TATCTTTATAATCCCAAACTTTGTCCTAATGTAAAAGCTACCATGTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATAATCCCAAACTTTGTCCTAATGTAAAAGCTACCATGTATTC  500

seq1  TGATATCATTAAGTAACTGAGACTAGTTATGCCTGCTAAGTCTTGGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATTAAGTAACTGAGACTAGTTATGCCTGCTAAGTCTTGGGTAG  550

seq1  ATATTTCAAGCTAAAATCTGCGTGAGTGTAAAGTAAGAATAGAAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAGCTAAAATCTGCGTGAGTGTAAAGTAAGAATAGAAAGAGAT  600

seq1  CTTGAAAACCCCCTATAGCCTGTAGCATAAGCCCAACAACTAAAGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACCCCCTATAGCCTGTAGCATAAGCCCAACAACTAAAGACATG  650

seq1  TTATACATCTCACACTGAGAAGCAGCCTGTCAATTTAAATAAGACTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATCTCACACTGAGAAGCAGCCTGTCAATTTAAATAAGACTCATT  700

seq1  AGTTCCAAGAAAATAGCATTCTCTACACTCTATTTATCAGCATGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGAAAATAGCATTCTCTACACTCTATTTATCAGCATGTTTTTT  750

seq1  TTCATGCAATAGTCAATGTGAATCAAACTAC-TTTCAAACATAGTAGTTA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCATGCAATAGTCAATGTGAATCAAACTACTTTTCAAACATAGTAGTTA  800

seq1  TAATGCAGATTAAAATTGCAGTAACAGGAATTAACAAATAATTGAGCCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGATTAAAATTGCAGTAACAGGAATTAACAAATAATTGAGCCAT  850

seq1  AAAGTGTAACAGCTCTTGCTGCATAAATGAAAACACTGTTATCTTTTTTT  899
       |||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  -AAGTGT-ACAGCTCTTGCTGCATAAATGAAAACACTGGTATCTTTTTTT  898

seq1  TTGGGCAGTAAAAAGTATGATAAATTCTTTCATTATTTAGGAGGATATAG  949
      ||||||||| ||||||||||||||||| |||| |||||| ||||||||||
seq2  TTGGGCAGT-AAAAGTATGATAAATTCCTTCA-TATTTA-GAGGATATAG  945

seq1  -CTCCTTTGAGGTATAATCACAATCATACACAAGAAATATTCTAGCTATT  998
       ||||||||||   | ||| || || ||||| ||||| || |||||||||
seq2  CCTCCTTTGAG---TTATCCCATTC-TACACCAGAAAAATCCTAGCTATT  991

seq1  AAACCATATAAACTTGTATTTGCCTAACCTTTGCAGTACAGAGGACTGCA  1048
      ||||||||||||| ||||||||||||||| ||||||||| || || ||||
seq2  AAACCATATAAACCTGTATTTGCCTAACC-TTGCAGTAC-GA-GATTGCA  1038

seq1  CCAACTAAGGATGTGTGTAAGCT  1071
      |||||| | ||||| ||||||||
seq2  CCAACT-ATGATGT-TGTAAGCT  1059