BAC Information

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BAC

Clone NameB6Ng01-129A05
Chromosome5 (Build37)
Map Location 15,225,889 - 15,380,083
singlet/doubletdoublet
Overlap gene4930519H02Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A05.bB6Ng01-129A05.g
ACCDH930710DH930711
length1,1101,092
definitionDH930710|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A05, 5' end.DH930711|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,225,889 - 15,227,011)(15,378,965 - 15,380,083)
sequence
gaattcaatcttaaaaggcacttatgataggaaaatattgaaagagagca
cgtggatccatacactagactaacgcgggaatggaacgggaatgaaaaat
tactgtatgggtagggaacgctagaatccaggaggagagcttccttgaaa
ctcttttgcctcatgagtgacttttaagcctctcggcttgtccagttgac
tcgaccagagagcgtagcaaccaaggtgtataatattagacagggactag
aagagagcccaactgccttcattgagagagtcatagaagcatttagacag
tacgcttctatggattccaagtctcaggaagcaaaggcagcagtggtcat
gtcttttattaaccagtctcctccagatattagtagaaaacttcagagat
ttaagagtcttggagaaaagagtcttcaggttttaatggtagtggctgaa
aaggtttttttaaacaatagggatagtggagaagaaaaatgggtaaggac
caagaattggtagaatcagaacctatctaatatcatgttagcatcaatgg
acaatacagaggatctgaggagacacctcaaacagccaactaaagatgaa
ggtaagggaggacctggaaagggggacacctgcccccagctaggcaaaaa
tcaatgtgtctgttgtaaagaagagggccactgggccaaagaatgtccca
agaagggaaagtcaagagagacagtgccaaatatgacaataaaggaagac
agtgactagagagtattgggctcggttcccattcccaagcccagggtaac
cattaaggtggaggggaagcccactgaatttatgtctgaatttatgtgga
cacaggagcccagcactcagtctttttacaagtagctttaaccttgtcca
ccaagacatcttgggtacaggaaacaacagggattaaacaatgatgcatt
gactactggaagaaaagtggaccttggtgtggtctagtatccacttcttt
aatgtatgtaattcctaactgtccagacccactgtggggcatgattatta
agatggggtgctgatacattaaccctgatgggaccaagataatggaacat
gacaccccat
gaattctccaactgagcacaatgctctaaataactcaatagaattctctg
aaaagataaaaagcagctaattcagcttttggcacctcaatgtaaatcct
ttctaattttggagttttaagtgtattccaactgaaagctggttgtctga
ctcattacccttagagtcagccaaatttttattcggagaaaagaaagaac
tctttactcttatttataaactaataacaaagttttattcactttatctt
tataagtgacattcaagatatatgaaaataagaagtcaatataaaaaatt
aaaagtttgtcccaactgggaagcaaggagatttccaaaaaaaaaaaaaa
aaaaaaaaaccaaaataacattaaagtaaatagtgtactctctttagaca
ttcactatgatatttccaccacagaaataattacatgttaggtaaaagta
gcaattagaaaaaggcaagaaagctattggaaagaaaatgtataatcata
tcacatatatgaagtttggtagaaaaaaagcattacattttgagcaagaa
aaatccaagagaaaaatggttgagaggtatttgactgattataaagttta
aaccaagattaaagcatagaaatacataaaacattctgggaggaagaggg
acaaacaagtactgattaagggaagatgtggaccattcaagaaagaccca
ttggcatagactttgcttaggtcttgcttgtgcatctatttctgtaaaga
atgcttcacagcagacatactgatactctgtctcttacaaacttttcttc
cccatctttggggattatgctgatggaatgctcatggagtctcaactcta
gacaaagaccttcagcaactgacacctgcctgagaaagaagcattgacct
ctgcagatgagattcaaacagtcacccaacaccagtgccagtgtcagtgt
cgtctgcatcatatgcacacaaacaagaaagccctctcagcagcctgcat
gcaaaagagaatgagaagctgaatgaagatggctttactaaattgagatc
actaggcatacttctagaatgggaaatctgagccaatgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15225889_15227011
seq2: B6Ng01-129A05.b_47_1156

seq1  GAATTCAATCTTAAAAGGCACTTATGATAGGAAAATATTGAAAGAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTAAAAGGCACTTATGATAGGAAAATATTGAAAGAGAGCA  50

seq1  CGTGGATCCATACACTAGACTAACGCGGGAATGGAACGGGAATGAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATCCATACACTAGACTAACGCGGGAATGGAACGGGAATGAAAAAT  100

seq1  TACTGTATGGGTAGGGAACGCTAGAATCCAGGAGGAGAGCTTCCTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATGGGTAGGGAACGCTAGAATCCAGGAGGAGAGCTTCCTTGAAA  150

seq1  CTCTTTTGCCTCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGCCTCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGAC  200

seq1  TCGACCAGAGAGCGTAGCAACCAAGGTGTATAATATTAGACAGGGACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAGAGAGCGTAGCAACCAAGGTGTATAATATTAGACAGGGACTAG  250

seq1  AAGAGAGCCCAACTGCCTTCATTGAGAGAGTCATAGAAGCATTTAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCCCAACTGCCTTCATTGAGAGAGTCATAGAAGCATTTAGACAG  300

seq1  TACGCTTCTATGGATTCCAAGTCTCAGGAAGCAAAGGCAGCAGTGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTTCTATGGATTCCAAGTCTCAGGAAGCAAAGGCAGCAGTGGTCAT  350

seq1  GTCTTTTATTAACCAGTCTCCTCCAGATATTAGTAGAAAACTTCAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTATTAACCAGTCTCCTCCAGATATTAGTAGAAAACTTCAGAGAT  400

seq1  TTAAGAGTCTTGGAGAAAAGAGTCTTCAGGTTTTAATGGTAGTGGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTCTTGGAGAAAAGAGTCTTCAGGTTTTAATGGTAGTGGCTGAA  450

seq1  AAGGTTTTTTTAAACAATAGGGATAGTGGAGAAGAAAAATGGGTAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTTTAAACAATAGGGATAGTGGAGAAGAAAAATGGGTAAGGAC  500

seq1  CAAGAATTGGTAGAATCAGAACCTATCTAATATCATGTTAGCATCAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTGGTAGAATCAGAACCTATCTAATATCATGTTAGCATCAATGG  550

seq1  ACAATACAGAGGATCTGAGGAGACACCTCAAACAGCCAACTAAAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAGAGGATCTGAGGAGACACCTCAAACAGCCAACTAAAGATGAA  600

seq1  GGTAAGGGAGGACCTGGAAAGGGGGACACCTGCCCCCAGCTAGGCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGAGGACCTGGAAAGGGGGACACCTGCCCCCAGCTAGGCAAAAA  650

seq1  TCAATGTGTCTGTTGTAAAGAAGAGGGCCACTGGGCCAAAGAATGTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGTCTGTTGTAAAGAAGAGGGCCACTGGGCCAAAGAATGTCCCA  700

seq1  AGAAGGGAAAGTCAAGAGAGACAGTGCCAAATATGACAATAAAGGAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAAGTCAAGAGAGACAGTGCCAAATATGACAATAAAGGAAGAC  750

seq1  AGTGACTAGAGAGTATTGGGCTCGGTTCCCATTCCCAAGCCCAGGGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAGAGAGTATTGGGCTCGGTTCCCATTCCCAAGCCCAGGGTAAC  800

seq1  CATTAAGGTGGAGGGGAAGCCCACTGAATTTATGTCTGAATTTATGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGTGGAGGGGAAGCCCACTGAATTTATGTCTGAATTTATGTGGA  850

seq1  CACAGGAGCCCAGCACTCAGTCTTTTTACAAGTAGCTTTAACCTTGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCCCAGCACTCAGTCTTTTTACAAGTAGCTTTAACCTTGTCCA  900

seq1  CCAAGACATCTTGGGTACAGGAAACAACAGGGATTAAACAATGATGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACATCTTGGGTACAGGAAACAACAGGGATTAAACAATGATGCATT  950

seq1  GACTACTGGAAGAAAAGTGGACCTTGGTGTGGGTCTAGTATCCCACTCCT  1000
      |||||||||||||||||||||||||||||| |||||||||| ||||| ||
seq2  GACTACTGGAAGAAAAGTGGACCTTGGTGT-GGTCTAGTAT-CCACTTCT  998

seq1  TTAATGTAATGTAATTCCTAACTGTCCAGACCCACTGTTGGGGCATGATT  1050
      ||||||| ||||||||||||||||||||||||||||| |||||||||| |
seq2  TTAATGT-ATGTAATTCCTAACTGTCCAGACCCACTG-TGGGGCATGA-T  1045

seq1  TATTAAAGATGGGGGTGCTGATACATTTAACCCCTGATGGTACCAAAGTA  1100
      |||| ||||| ||||||||||||||||  | ||||||||| |||||  | 
seq2  TATT-AAGAT-GGGGTGCTGATACATT--AACCCTGATGGGACCAAGAT-  1090

seq1  TTAAATGGAACATGACACCCCAT  1123
         ||||||||||||||||||||
seq2  ---AATGGAACATGACACCCCAT  1110

seq1: chr5_15378965_15380083
seq2: B6Ng01-129A05.g_68_1159 (reverse)

seq1  TTGTCATTTGGCTCAGATTTCTCCCTTTTCTAGAAGTAATGCTTTAGTGA  50
      |||||| |||||||||||||   ||  |||||||||| ||||  ||||| 
seq2  TTGTCA-TTGGCTCAGATTT---CCCATTCTAGAAGT-ATGC-CTAGTG-  43

seq1  ATCCTTCACTTTAGTAAAACCCATCCTCCAATCAGCCTCTCATTCTCTTA  100
      |||  ||| |||||| ||| |||| || || ||||| |||||||||||| 
seq2  ATC--TCAATTTAGT-AAAGCCAT-CTTCATTCAGCTTCTCATTCTCTTT  89

seq1  TGCATGCAGGCTGCTGAGAGGGCTTTTCTTGTTTGTGTGCATATGATTGC  150
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TGCATGCAGGCTGCTGAGAGGGC-TTTCTTGTTTGTGTGCATATGA-TGC  137

seq1  AGGACCGACCACTTGACCACTTGGCACTTGGTGTTGGGTGACCTGTTTGG  200
      ||   ||| ||| ||| ||| |||||| ||||||||||||| |||||| |
seq2  AG--ACGA-CAC-TGA-CAC-TGGCAC-TGGTGTTGGGTGA-CTGTTT-G  178

seq1  AATCTCATCCTTGGCAGAGGTCAATGCTTCCTTTCTCAGGCAGGTGTCAG  250
      |||||||||    |||||||||||||||| ||||||||||||||||||||
seq2  AATCTCATC---TGCAGAGGTCAATGCTT-CTTTCTCAGGCAGGTGTCAG  224

seq1  TTGCCTGAAGGTCTTTGTCTAGAGTTGAGACTCCATGAGCATTCCATCAG  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-CTGAAGGTCTTTGTCTAGAGTTGAGACTCCATGAGCATTCCATCAG  273

seq1  CATAATCCCCAAAGATGGGGAAG-AAAGTTTGTAAGAGACAGAGTATCAG  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATAATCCCCAAAGATGGGGAAGAAAAGTTTGTAAGAGACAGAGTATCAG  323

seq1  TATGTCTGCTGTGAAGCATTCTTTTACAGAAATAGATGCACAAGCAAGAC  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGTCTGCTGTGAAGCATTC-TTTACAGAAATAGATGCACAAGCAAGAC  372

seq1  CTAAGCAAAGTCTATGCCAATGGGTCTTTCTTGAATGGTCCACATCTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAAGTCTATGCCAATGGGTCTTTCTTGAATGGTCCACATCTTCC  422

seq1  CTTAATCAGTACTTGTTTGTCCCTCTTCCTCCCAGAATGTTTTATGTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGTACTTGTTTGTCCCTCTTCCTCCCAGAATGTTTTATGTATT  472

seq1  TCTATGCTTTAATCTTGGTTTAAACTTTATAATCAGTCAAATACCTCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTTTAATCTTGGTTTAAACTTTATAATCAGTCAAATACCTCTCA  522

seq1  ACCATTTTTCTCTTGGATTTTTCTTGCTCAAAATGTAATGCTTTTTTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTTCTCTTGGATTTTTCTTGCTCAAAATGTAATGCTTTTTTTCT  572

seq1  ACCAAACTTCATATATGTGATATGATTATACATTTTCTTTCCAATAGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTTCATATATGTGATATGATTATACATTTTCTTTCCAATAGCTT  622

seq1  TCTTGCCTTTTTCTAATTGCTACTTTTACCTAACATGTAATTATTTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTTTTTCTAATTGCTACTTTTACCTAACATGTAATTATTTCTGT  672

seq1  GGTGGAAATATCATAGTGAATGTCTAAAGAGAGTACACTATTTACTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAATATCATAGTGAATGTCTAAAGAGAGTACACTATTTACTTTAA  722

seq1  TGTTATTTTGGTTTTTTTTTTTTTTTTTTTTTTTGGAAATCTCCTTGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTGGTTTTTTTTTTTTTTTTTTTTTTTGGAAATCTCCTTGCTT  772

seq1  CCCAGTTGGGACAAACTTTTAATTTTTTATATTGACTTCTTATTTTCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGGACAAACTTTTAATTTTTTATATTGACTTCTTATTTTCATA  822

seq1  TATCTTGAATGTCACTTATAAAGATAAAGTGAATAAAACTTTGTTATTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAATGTCACTTATAAAGATAAAGTGAATAAAACTTTGTTATTAG  872

seq1  TTTATAAATAAGAGTAAAGAGTTCTTTCTTTTCTCCGAATAAAAATTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATAAGAGTAAAGAGTTCTTTCTTTTCTCCGAATAAAAATTTGG  922

seq1  CTGACTCTAAGGGTAATGAGTCAGACAACCAGCTTTCAGTTGGAATACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTAAGGGTAATGAGTCAGACAACCAGCTTTCAGTTGGAATACAC  972

seq1  TTAAAACTCCAAAATTAGAAAGGATTTACATTGAGGTGCCAAAAGCTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTCCAAAATTAGAAAGGATTTACATTGAGGTGCCAAAAGCTGAA  1022

seq1  TTAGCTGCTTTTTATCTTTTCAGAGAATTCTATTGAGTTATTTAGAGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCTTTTTATCTTTTCAGAGAATTCTATTGAGTTATTTAGAGCAT  1072

seq1  TGTGCTCAGTTGGAGAATTC  1119
      ||||||||||||||||||||
seq2  TGTGCTCAGTTGGAGAATTC  1092