BAC Information

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BAC

Clone NameB6Ng01-130D12
Chromosome5 (Build37)
Map Location 102,282,131 - 102,475,410
singlet/doubletdoublet
Overlap geneWdfy3
Upstream geneA230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneEG666515, EG666527, LOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130D12.bB6Ng01-130D12.g
ACCDH931589DH931590
length467955
definitionDH931589|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D12, 5' end.DH931590|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,282,131 - 102,282,603)(102,474,457 - 102,475,410)
sequence
agagaggccaagaagattccaagagcccacaccgcagtggatcaggggca
gagttacgccatcaaagcgcttgctctgtcaggctcatttgtatctcttt
gcaatgaactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
attgtctatacatttgcaagttgtaaagcagaaacacaccacgactaggc
attgaagaactttgatgggaagactgtgctggctacttttttgttaactc
agcatatgctggagtcaattgggaagaaggaacctcaattgagaaaaata
ccccaaccaggcaggcctgtgagaaagcctgtggggcatttttcctgatt
attgattgatgtgtgagggcccaggtccactgtgggcggtgctacccctg
ggctgctggttctggagtgcataagcaagcagtatgagcaagccacaagg
agtgagcaagccacagg
gaattcactcagtgggtgatggcatacctctgagtatcagtggttctgtg
atggggcgaaatctaacaggagagccctcagtctgaatgggaggatccta
tcaggcttcatcctctagtgactgtcgatccagcaggctgactgcttcag
tggcagaggttagaccagctgtgaccgggttggaggcagtgggaggggcc
ccgtctgatggtgggtggggccaggtcagcacttggaagacagcagactt
cttgtgactttttccttcccttcctgcttttcattgcatgatctggcatg
tgtcccagaagagccatgggaggctgtaaaatggcttattaaaagtttct
ttcagaagatgggcattttgttatcatttaatgctccactgtgtttaaac
tcagagaccccctgaaaactgctagagactgagaaacagcatttttccca
ttgatctacaaactatgaagagtttaattggttttaagcctgttagactt
tgctcagtagaacccccatgtttagtagcgcagggtttagtgagacagag
gtgtggctaacactttagctacgtctggagttaaggtgactgcttctaat
ttatacaattttagtttcgaaattcaaatttttgtgtatgaacatctgtg
catttaaaaatgctcagcctttgacatcatacataccagatttatcctaa
gttagaggcaggcaaagcatgatataatatatgtagacttataggggcca
gagtggaaattctgtctaaattttgtcctgtttaaaacttgaccgcctta
aaatgtgttgtgtggtgccacagtggaatgcacctacatcatttcctaag
catttcttttggctgaacttgcactgaaatgaagagcgtaaaatgctcct
ccagctgtacggtatttattgtctgcacgttcactgtatctgtagatgca
tgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102282131_102282603
seq2: B6Ng01-130D12.b_50_522

seq1  GAATTCAGAGAGGCCAAGAAGATTCCAAGAGCCCACACCGCAGTGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGGCCAAGAAGATTCCAAGAGCCCACACCGCAGTGGATCA  50

seq1  GGGGCAGAGTTACGCCATCAAAGCGCTTGCTCTGTCAGGCTCATTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGTTACGCCATCAAAGCGCTTGCTCTGTCAGGCTCATTTGTAT  100

seq1  CTCTTTGCAATGAACTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCAATGAACTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTATTGTCTATACATTTGCAAGTTGTAAAGCAGAAACACACCACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTGTCTATACATTTGCAAGTTGTAAAGCAGAAACACACCACGA  200

seq1  CTAGGCATTGAAGAACTTTGATGGGAAGACTGTGCTGGCTACTTTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATTGAAGAACTTTGATGGGAAGACTGTGCTGGCTACTTTTTTGT  250

seq1  TAACTCAGCATATGCTGGAGTCAATTGGGAAGAAGGAACCTCAATTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGCATATGCTGGAGTCAATTGGGAAGAAGGAACCTCAATTGAGA  300

seq1  AAAATACCCCAACCAGGCAGGCCTGTGAGAAAGCCTGTGGGGCATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCCAACCAGGCAGGCCTGTGAGAAAGCCTGTGGGGCATTTTTC  350

seq1  CTGATTATTGATTGATGTGTGAGGGCCCAGGTCCACTGTGGGCGGTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATTGATTGATGTGTGAGGGCCCAGGTCCACTGTGGGCGGTGCTA  400

seq1  CCCCTGGGCTGCTGGTTCTGGAGTGTATAAGCAAGCAGTATGAGCAAGCC  450
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCTGGGCTGCTGGTTCTGGAGTGCATAAGCAAGCAGTATGAGCAAGCC  450

seq1  ACAAGGAGTGAGCAAGCCACAGG  473
      |||||||||||||||||||||||
seq2  ACAAGGAGTGAGCAAGCCACAGG  473

seq1: chr5_102474457_102475410
seq2: B6Ng01-130D12.g_69_1023 (reverse)

seq1  CAGCATGCCATCTACAGATACAGTG-ACGTGCAGACATAAAATACCGTAC  49
      ||||||| ||||||||||||||||| |||||||||||  |||||||||||
seq2  CAGCATG-CATCTACAGATACAGTGAACGTGCAGACAATAAATACCGTAC  49

seq1  AGCTGATGGAGCATTCTACGCTC-TCATTTCAGTGCAAGTTCAGCCAAAA  98
      |||||  |||||||| ||||||| ||||||||||||||||||||||||||
seq2  AGCTGGAGGAGCATTTTACGCTCTTCATTTCAGTGCAAGTTCAGCCAAAA  99

seq1  GAAATGCTTAGGAAATGATGTAGGTGCATTCCAACTGTGGCA-CACACAA  147
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GAAATGCTTAGGAAATGATGTAGGTGCATTCC-ACTGTGGCACCACACAA  148

seq1  CACATTTTTAAGGC-GTCAAGTTTTAAACAGGACAAAATTTAGACAGAAT  196
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACA-TTTTAAGGCGGTCAAGTTTTAAACAGGACAAAATTTAGACAGAAT  197

seq1  TTCCACTCTGGCCCTTATAAGTCTACATATATTTATATCATGCTTTGCCT  246
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTCCACTCTGGCCCCTATAAGTCTACATATA-TTATATCATGCTTTGCCT  246

seq1  GCCTCTAACTTAGGATAAATCTGGTATGTATGATGTCAAAGGCTGAGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAACTTAGGATAAATCTGGTATGTATGATGTCAAAGGCTGAGCAT  296

seq1  TTTTAAATGCACAGATGTTCATACACAAAAATTTGAATTTCGAAACT-AA  345
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTAAATGCACAGATGTTCATACACAAAAATTTGAATTTCGAAACTAAA  346

seq1  ATTGTATAAATTAGAAGCAGTCACCTTAACTCCAGACGTAGCTAAAGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAAATTAGAAGCAGTCACCTTAACTCCAGACGTAGCTAAAGTGT  396

seq1  TAGCCACACCTCTGTCTCACTAAACCCTGCGCTACTAAACATGGGGGTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACACCTCTGTCTCACTAAACCCTGCGCTACTAAACATGGGGGTTC  446

seq1  TACTGAGCAAAGTCTAACAGGCTTAAAACCAATTAAACTCTTCATAGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCAAAGTCTAACAGGCTTAAAACCAATTAAACTCTTCATAGTTT  496

seq1  GTAGATCAATGGGAAAAATGCTGTTTCTCAGTCTCTAGCAGTTTTCAGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAATGGGAAAAATGCTGTTTCTCAGTCTCTAGCAGTTTTCAGGG  546

seq1  GGTCTCTGAGTTTAAACACAGTGGAGCATTAAATGATAACAAAATGCCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGAGTTTAAACACAGTGGAGCATTAAATGATAACAAAATGCCCA  596

seq1  TCTTCTGAAAGAAACTTTTAATAAGCCATTTTACAGCCTCCCATGGCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAAGAAACTTTTAATAAGCCATTTTACAGCCTCCCATGGCTCT  646

seq1  TCTGGGACACATGCCAGATCATGCAATGAAAAGCAGGAAGGGAAGGAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACACATGCCAGATCATGCAATGAAAAGCAGGAAGGGAAGGAAAA  696

seq1  AGTCACAAGAAGTCTGCTGTCTTCCAAGTGCTGACCTGGCCCCACCCACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAGAAGTCTGCTGTCTTCCAAGTGCTGACCTGGCCCCACCCACC  746

seq1  ATCAGACGGGGCCCCTCCCACTGCCTCCAACCCGGTCACAGCTGGTCTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACGGGGCCCCTCCCACTGCCTCCAACCCGGTCACAGCTGGTCTAA  796

seq1  CCTCTGCCACTGAAGCAGTCAGCCTGCTGGATCGACAGTCACTAGAGGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCACTGAAGCAGTCAGCCTGCTGGATCGACAGTCACTAGAGGAT  846

seq1  GAAGCCTGATAGGATCCTCCCATTCAGACTGAGGGCTCTCCTGTTAGATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGATAGGATCCTCCCATTCAGACTGAGGGCTCTCCTGTTAGATT  896

seq1  TCGCCCCATCACAGAACCACTGATACTCAGAGGTATGCCATCACCCACTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCCATCACAGAACCACTGATACTCAGAGGTATGCCATCACCCACTG  946

seq1  AGTGAATTC  954
      |||||||||
seq2  AGTGAATTC  955