BAC Information

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BAC

Clone NameB6Ng01-131K02
Chromosome5 (Build37)
Map Location 14,093,529 - 14,217,318
singlet/doubletdoublet
Overlap geneSema3e
Upstream geneLOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131K02.bB6Ng01-131K02.g
ACCDH932638DH932639
length1,1101,135
definitionDH932638|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K02, 5' end.DH932639|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,093,529 - 14,094,648)(14,216,181 - 14,217,318)
sequence
gaattcctcacacagtggcttttggatggtgttaaagagtctatgtttgc
atttaaaaatttcagaaggaaagcgaaagtctgtggagaaatattatttt
aattgacaactctctatctgttcttaaaatacagatgcagaatgtctaat
ggagtatcagatgttgtctactcatcaatattgaaaaaaaaacagaatgt
ttctactttgtactcttagaataaaataagacaaaatctaaagaagaaat
tctataaaatgttgaatcacacacacatatatttacttagatgagttatc
atagtttaatatatattggattattctcaatccaaggaccagtagccctc
ttgaagttttcaattgataaaacactctaaattaataggatttagtagat
gagttcattagctttggactactgtagtttatacatgacacaatttaaaa
ggaggataatttatttttattcacaatttcagaagtctatggtcatctga
ctctgttgttttagaacctgtggtttcacagaacaccacaggagggttgt
gtggcagaccaaaccacacagcttcaagtaggagacagggagatggttcc
gtgatggctcaggagcacaaatgtgttctctctttaaaatatgtaaagat
acatagaattttaatgcattcgattgattgattgattgattgattgattg
tggaaatgtatgtgtggtttgcatgtgctgctgggaaagtatggaggcca
aagcacagcctgtagaagtctgttttcactttccaccaaatggggactgg
ggcttaaagccaggtcaccaggcaggacagcacacatcttacactgagcc
gcctcaccagcctgatatcgattatcttaacattcagctgttttcattca
ttgaaacatttgtttttaacttttcttatattagagttaatggatgtcca
gttgtgtgcaattaagagtagattttgctcaagtgttggtcaaatatact
gttgcctccgattttagaaaaagtctttttccactcaattgtgttttaac
agctgctcttcaactctgtgcataacctaagtgtcagaaatgcagaaaca
gtggattctg
gaattcttgaatttttattttaatcttaatcttaacaattaacattaaat
gtgaatattataacggtgttaattattaatattatagcactaatgaatat
cataatttaaaatcatgaagcctgaaattccattatattttatcatttgt
ccacagtagtagcagcctcaaaacgttgttgttattgcaaatctgtgtat
ataataaattgtaaattccaaattccaaaaaaatagaaaaggtgattatt
ctaagtcatatttcaaaacaaatacactgtaaaggtaaaatatgcaataa
acacttttctgtatatctgtatatttattctgtatacttattcttataat
ggaattctattagtagtttagatgtaatgtccctttattattttaggaaa
cacaatgtgaatttaattaatggactgtatatcctctgaatttttattca
cgatgtaggaatacatattttaattgtctagtatgagcaattcacaatag
tgatttgcaaccttcttattttagttaactcaaaggtttctcctatttat
ttcagctagctgtgggcatttggttttttgtcttgccaattgactagtca
tacccatcattaagaaagtggtttctggtgcaaaaatgttaaagaaaaag
agtggtcattagctgacactcatgtctgaagctgtatttgcttggtaggc
aaccagtgacatcaatcaatccagtcatggtcaattaaattcatgaggga
cacgatggagacgtaagctcggccagtagggatagttttagggcgacact
gagtgtttcttttccttttccttttatttgaggaaatagttttaatataa
gcaagtatttgattagctctttggagacccagctatggccagaagctgca
ggaagcagtcgacagtgggcattttgccatgtgagggagcagcagacttg
aataagattttctctggggatggcaaagggtaaggagtaactagaattct
ctatctatgcaattgatggggtgaattcgaaaaattaaatattccattcc
cgacctgctcttgaaataaaaatacttaaatccactggaatgaattacta
atcttaaaatcgttgcacatagactttgaaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14093529_14094648
seq2: B6Ng01-131K02.b_46_1155

seq1  GAATTCCTCACACAGTGGCTTTTGGATGGTGTTAAAGAGTCTATGTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACACAGTGGCTTTTGGATGGTGTTAAAGAGTCTATGTTTGC  50

seq1  ATTTAAAAATTTCAGAAGGAAAGCGAAAGTCTGTGGAGAAATATTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATTTCAGAAGGAAAGCGAAAGTCTGTGGAGAAATATTATTTT  100

seq1  AATTGACAACTCTCTATCTGTTCTTAAAATACAGATGCAGAATGTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACAACTCTCTATCTGTTCTTAAAATACAGATGCAGAATGTCTAAT  150

seq1  GGAGTATCAGATGTTGTCTACTCATCAATATTGAAAAAAAAACAGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATCAGATGTTGTCTACTCATCAATATTGAAAAAAAAACAGAATGT  200

seq1  TTCTACTTTGTACTCTTAGAATAAAATAAGACAAAATCTAAAGAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTGTACTCTTAGAATAAAATAAGACAAAATCTAAAGAAGAAAT  250

seq1  TCTATAAAATGTTGAATCACACACACATATATTTACTTAGATGAGTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAATGTTGAATCACACACACATATATTTACTTAGATGAGTTATC  300

seq1  ATAGTTTAATATATATTGGATTATTCTCAATCCAAGGACCAGTAGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAATATATATTGGATTATTCTCAATCCAAGGACCAGTAGCCCTC  350

seq1  TTGAAGTTTTCAATTGATAAAACACTCTAAATTAATAGGATTTAGTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTTCAATTGATAAAACACTCTAAATTAATAGGATTTAGTAGAT  400

seq1  GAGTTCATTAGCTTTGGACTACTGTAGTTTATACATGACACAATTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATTAGCTTTGGACTACTGTAGTTTATACATGACACAATTTAAAA  450

seq1  GGAGGATAATTTATTTTTATTCACAATTTCAGAAGTCTATGGTCATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATAATTTATTTTTATTCACAATTTCAGAAGTCTATGGTCATCTGA  500

seq1  CTCTGTTGTTTTAGAACCTGTGGTTTCACAGAACACCACAGGAGGGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTTTTAGAACCTGTGGTTTCACAGAACACCACAGGAGGGTTGT  550

seq1  GTGGCAGACCAAACCACACAGCTTCAAGTAGGAGACAGGGAGATGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGACCAAACCACACAGCTTCAAGTAGGAGACAGGGAGATGGTTCC  600

seq1  GTGATGGCTCAGGAGCACAAATGTGTTCTCTCTTTAAAATATGTAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTCAGGAGCACAAATGTGTTCTCTCTTTAAAATATGTAAAGAT  650

seq1  ACATAGAATTTTAATGCATTCGATTGATTGATTGATTGATTGATTGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAATTTTAATGCATTCGATTGATTGATTGATTGATTGATTGATTG  700

seq1  TGGAAATGTATGTGTGGTTTGCATGTGCTGCTGGGAAAGTATGGAGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTATGTGTGGTTTGCATGTGCTGCTGGGAAAGTATGGAGGCCA  750

seq1  AAGCACAGCCTGTAGAAGTCTGTTTTCACTTTCCACCAAATGGGGACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCCTGTAGAAGTCTGTTTTCACTTTCCACCAAATGGGGACTGG  800

seq1  GGCTTAAAGCCAGGTCACCAGGCAGGACAGCACACATCTTACACTGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAGCCAGGTCACCAGGCAGGACAGCACACATCTTACACTGAGCC  850

seq1  GCCTCACCAGCCTGATATCGATTATCTTAACATTCAGCTGTTTTCATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCAGCCTGATATCGATTATCTTAACATTCAGCTGTTTTCATTCA  900

seq1  TTGAAACATTTGTTTTTAACTTTTCTTATATTAGAGTTAATGGATGTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATTTGTTTTTAACTTTTCTTATATTAGAGTTAATGGATGTCCA  950

seq1  GTTGTGTGCAATTAAGAGTAGATTTTGCTCAAGTGTTGGTCAAATATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCAATTAAGAGTAGATTTTGCTCAAGTGTTGGTCAAATATACT  1000

seq1  GTTGCCTCCCGATTTTTAGAAAAGTTCTTTTTCCACTCAATTGTGTTTTA  1050
      ||||||| |||| ||||||||||  |||||||||||||||||||||||||
seq2  GTTGCCT-CCGA-TTTTAGAAAAAGTCTTTTTCCACTCAATTGTGTTTTA  1048

seq1  ACAAGCTGCTCTTCCACCTCTGTGCCATAAACCTAAGTGTTCAGGACATG  1100
      || |||||||||| || ||||||| ||| |||||||||| ||| || |||
seq2  AC-AGCTGCTCTT-CAACTCTGTG-CAT-AACCTAAGTG-TCA-GAAATG  1092

seq1  CAGGAAACAGTGGATATCTG  1120
      || |||||||||||| ||||
seq2  CA-GAAACAGTGGAT-TCTG  1110

seq1: chr5_14216181_14217318
seq2: B6Ng01-131K02.g_69_1203 (reverse)

seq1  ATTGTTTCAAGTTCTTAGTGGCAACGATTTTAAGAATGAGTAATCATTTC  50
      ||||||||||  |||  || |||||||||||||| || ||||||   |||
seq2  ATTGTTTCAAAGTCTATGT-GCAACGATTTTAAG-ATTAGTAATTCATTC  48

seq1  CAGT-GAATTAAGTATATTTATATCAAGAGCAGTTC-GGAAT-GAATATT  97
      |||| || |||||||| ||||| |||||||||| || ||||| |||||||
seq2  CAGTGGATTTAAGTATTTTTATTTCAAGAGCAGGTCGGGAATGGAATATT  98

seq1  T-ATTTCTCGAATTCACCCCATCAATTGCATAGATAGAGAATTCTAGTTA  146
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCGAATTCACCCCATCAATTGCATAGATAGAGAATTCTAGTTA  148

seq1  CTCCCTTACCCCTTTGCCATCCCCAGAGAATATCTTATTCAAGTCTGCTG  196
      || ||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CT-CCTTA-CCCTTTGCCATCCCCAGAGAAAATCTTATTCAAGTCTGCTG  196

seq1  CTCCCTCACATTGGCAAAATGCCCACTGTCGACTTGCTTCCTGCAGCTTC  246
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CTCCCTCACA-TGGCAAAATGCCCACTGTCGAC-TGCTTCCTGCAGCTTC  244

seq1  TGGCCATAGCTGGGTCTCCAAAGAGCTATTCAAATACTTTGCTTATATTA  296
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  TGGCCATAGCTGGGTCTCCAAAGAGCTAATCAAATAC-TTGCTTATATTA  293

seq1  AAACTATTTCCTCAAATAAAAGGAAAAGGAAAAGAAACACTCAGTGTCGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTCCTCAAATAAAAGGAAAAGGAAAAGAAACACTCAGTGTCGC  343

seq1  CCTAAAACTATCCCTACTGGCCGAGCTTACGTCTCCATCGTGTCCCTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTATCCCTACTGGCCGAGCTTACGTCTCCATCGTGTCCCTCAT  393

seq1  GAATTTAATTGACCATGACTGGATTGATTGATGTCACTGGTTGCCTACCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATTGACCATGACTGGATTGATTGATGTCACTGGTTGCCTACCA  443

seq1  AGCAAATACAGCTTCAGACATGAGTGTCAGCTAATGACCACTCTTTTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACAGCTTCAGACATGAGTGTCAGCTAATGACCACTCTTTTTCT  493

seq1  TTAACATTTTTGCACCAGAAACCACTTTCTTAATGATGGGTATGACTAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTTTGCACCAGAAACCACTTTCTTAATGATGGGTATGACTAGT  543

seq1  CAATTGGCAAGACAAAAAACCAAATGCCCACAGCTAGCTGAAATAAATAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGCAAGACAAAAAACCAAATGCCCACAGCTAGCTGAAATAAATAG  593

seq1  GAGAAACCTTTGAGTTAACTAAAATAAGAAGGTTGCAAATCACTATTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTTTGAGTTAACTAAAATAAGAAGGTTGCAAATCACTATTGTG  643

seq1  AATTGCTCATACTAGACAATTAAAATATGTATTCCTACATCGTGAATAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCATACTAGACAATTAAAATATGTATTCCTACATCGTGAATAAA  693

seq1  AATTCAGAGGATATACAGTCCATTAATTAAATTCACATTGTGTTTCCTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGGATATACAGTCCATTAATTAAATTCACATTGTGTTTCCTAA  743

seq1  AATAATAAAGGGACATTACATCTAAACTACTAATAGAATTCCATTATAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAGGGACATTACATCTAAACTACTAATAGAATTCCATTATAAG  793

seq1  AATAAGTATACAGAATAAATATACAGATATACAGAAAAGTGTTTATTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATACAGAATAAATATACAGATATACAGAAAAGTGTTTATTGCA  843

seq1  TATTTTACCTTTACAGTGTATTTGTTTTGAAATATGACTTAGAATAATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACCTTTACAGTGTATTTGTTTTGAAATATGACTTAGAATAATCA  893

seq1  CCTTTTCTATTTTTTTGGAATTTGGAATTTACAATTTATTATATACACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTATTTTTTTGGAATTTGGAATTTACAATTTATTATATACACAG  943

seq1  ATTTGCAATAACAACAACGTTTTGAGGCTGCTACTACTGTGGACAAATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATAACAACAACGTTTTGAGGCTGCTACTACTGTGGACAAATGA  993

seq1  TAAAATATAATGGAATTTCAGGCTTCATGATTTTAAATTATGATATTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAATGGAATTTCAGGCTTCATGATTTTAAATTATGATATTCAT  1043

seq1  TAGTGCTATAATATTAATAATTAACACCGTTATAATATTCACATTTAATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTATAATATTAATAATTAACACCGTTATAATATTCACATTTAATG  1093

seq1  TTAATTGTTAAGATTAAGATTAAAATAAAAATTCAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTAAGATTAAGATTAAAATAAAAATTCAAGAATTC  1135