BAC Information

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BAC

Clone NameB6Ng01-133G22
Chromosome5 (Build37)
Map Location 95,499,201 - 95,500,263
singlet/doubletsinglet
Overlap genenone
Upstream geneBC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121
Downstream geneLOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133G22.bB6Ng01-133G22.g
ACCDH933981DH933982
length1,0601,135
definitionDH933981|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G22, 5' end.DH933982|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaacctatagggtactgagataactgttacatattatcacact
gtgtttaatggggttcacagatcctgtgaatggctaggtaaatgatctat
gaaatgatgcacatccagaccattcttggaatgactcaggatattggtat
tgcattggcagatctacttagaaactatctaaaaaaagcaaacaatcaag
caaaccagcatcacacccgtatacaaatcgtttaaactgaaatgaattaa
agataatgtcaaagtcataagcttttgtgcaaaagagattcctgattcct
tgtgattctgtatccatgagtgcatttaccattgtcacacatgcaagaat
catctgtcagtaagtatgagtcctggcttctccttcagacaacgggagtt
caattctagacaaccaccttgtagctgacaaccatctatacaaggttctg
atacccttttctgtcatgcaaggatacatgcaaatagaacaagaatatac
ataaatgcatacagaaataaatgtaccgggacaaactcctaatttcctct
cactcacccatggtgtcagaggtcaactactggatcccagaacaccctac
actattgctcaccaatggaactcaaaggatatacctgaacctccacatac
tctcttcctagagcaacacaactgagactgatcaacatcaccattttaat
taattgggccatttttattcctttgtgaaattaagtccatttttttaatt
tattttttattaggtattttcctcgtttacatttccaatgctatcccaaa
agtcccccatacttacccccccccccaatcccctaccctcccactccccc
ttttggccctggcgtcccctgtactggggcatataaagtttataagttca
aaagaagcctctctttcacgtgatgctgactaggccatctttcgatacat
atgcagctagagacagagctcctgggcactggtcagttcatatgtgtaca
cctaaaggttgcagttctccatagcctcctttggtactttctctagcctc
ttcattcggg
gaattctcacctgaggaatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactacaggagaatcacacaataagtctcctgggc
atatatccagaaaatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaaaccagat
gtccctcaacagaggaatggatacagaaaatgtggtatatttacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggctggacctggagggtatcatcctgagtgaagtaacccaatcacaaa
ggaactcgcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaacttggcaaacacatgaaattcaa
gaagaacaaagaccaaagtgtggaccctttaccctttcttagaaatggga
acaaaacacccatggaaggagttacagagacaaaatttggagctgtgagg
aaaggatggaccttctagtgattgccatatgcagggatccatcccataat
cagcttccaaatgctgacaccattgcatacactatcaagattttgctaaa
aggacccagatatagctctcttgtgagactatgccggggcctagcaaaca
cagtagtggatgatcacagtcagctattggatgggtcacacgcctccatg
gaggagctagagaaatacccagagctaaaggactgcaccctatagtggac
acatatgactaacagtacccggagctcttgtctttagctgcaatggtatc
aaaagatgctatctgcaaaagtcatgacttcaactttatgccagtacagg
gacgcagttcaaagggggaaggtgtgggtagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95499201_95500263
seq2: B6Ng01-133G22.b_48_1107 (reverse)

seq1  CCCGAATGGAAGA-GCTAGAGAAAGTACCCAAGGA-GCTAAGGGGAACTG  48
      ||||||| ||||| ||||||||||||||| ||||| |||| || ||||||
seq2  CCCGAAT-GAAGAGGCTAGAGAAAGTACCAAAGGAGGCTATGGAGAACTG  49

seq1  CAACCCTATAGGTGGTACAACAATATGAACTGACCAGTGCCCCGGAGCTC  98
      ||| ||| ||||| |||||   |||||||||||||||||||| |||||||
seq2  CAA-CCTTTAGGT-GTACA--CATATGAACTGACCAGTGCCCAGGAGCTC  95

seq1  TTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTG  148
       |||||||||||||||||||||| ||||||||||||||||| ||||||  
seq2  -TGTCTCTAGCTGCATATGTATCGAAAGATGGCCTAGTCAG-CATCACGT  143

seq1  GAAAGAGAGGCT--CTTTGGACTTATAAACTTTATATGCCCCAGTACAGG  196
      ||||||||||||   |||| ||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCTTCTTTTGAACTTATAAACTTTATATGCCCCAGTACAGG  193

seq1  GGAACGCCAGGGCCAAAAAGGGGGAGTGGGAGGGTAGGGGAT--GGGGGG  244
      || ||||||||||| |||||||||||||||||||||||||||  ||||||
seq2  GG-ACGCCAGGGCC-AAAAGGGGGAGTGGGAGGGTAGGGGATTGGGGGGG  241

seq1  GGGGTAAGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAACGAGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAACGAGGA  291

seq1  AAATACCTAATAAAAAATAAATTAAAAAAATGGACTTAATTTCACAAAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAATAAAAAATAAATTAAAAAAATGGACTTAATTTCACAAAGG  341

seq1  AATAAAAATGGCCCAATTAATTAAAATGGTGATGTTGATCAGTCTCAGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGGCCCAATTAATTAAAATGGTGATGTTGATCAGTCTCAGTT  391

seq1  GTGTTGCTCTAGGAAGAGAGTATGTGGAGGTTCAGGTATATCCTTTGAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTCTAGGAAGAGAGTATGTGGAGGTTCAGGTATATCCTTTGAGT  441

seq1  TCCATTGGTGAGCAATAGTGTAGGGTGTTCTGGGATCCAGTAGTTGACCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGTGAGCAATAGTGTAGGGTGTTCTGGGATCCAGTAGTTGACCT  491

seq1  CTGACACCATGGGTGAGTGAGAGGAAATTAGGAGTTTGTCCCGGTACATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCATGGGTGAGTGAGAGGAAATTAGGAGTTTGTCCCGGTACATT  541

seq1  TATTTCTGTATGCATTTATGTATATTCTTGTTCTATTTGCATGTATCCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTATGCATTTATGTATATTCTTGTTCTATTTGCATGTATCCTT  591

seq1  GCATGACAGAAAAGGGTATCAGAACCTTGTATAGATGGTTGTCAGCTACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACAGAAAAGGGTATCAGAACCTTGTATAGATGGTTGTCAGCTACA  641

seq1  AGGTGGTTGTCTAGAATTGAACTCCCGTTGTCTGAAGGAGAAGCCAGGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGTCTAGAATTGAACTCCCGTTGTCTGAAGGAGAAGCCAGGAC  691

seq1  TCATACTTACTGACAGATGATTCTTGCATGTGTGACAATGGTAAATGCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTACTGACAGATGATTCTTGCATGTGTGACAATGGTAAATGCAC  741

seq1  TCATGGATACAGAATCACAAGGAATCAGGAATCTCTTTTGCACAAAAGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATACAGAATCACAAGGAATCAGGAATCTCTTTTGCACAAAAGCT  791

seq1  TATGACTTTGACATTATCTTTAATTCATTTCAGTTTAAACGATTTGTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGACATTATCTTTAATTCATTTCAGTTTAAACGATTTGTATA  841

seq1  CGGGTGTGATGCTGGTTTGCTTGATTGTTTGCTTTTTTTAGATAGTTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGATGCTGGTTTGCTTGATTGTTTGCTTTTTTTAGATAGTTTCT  891

seq1  AAGTAGATCTGCCAATGCAATACCAATATCCTGAGTCATTCCAAGAATGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATCTGCCAATGCAATACCAATATCCTGAGTCATTCCAAGAATGG  941

seq1  TCTGGATGTGCATCATTTCATAGATCATTTACCTAGCCATTCACAGGATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGTGCATCATTTCATAGATCATTTACCTAGCCATTCACAGGATC  991

seq1  TGTGAACCCCATTAAACACAGTGTGATAATATGTAACAGTTATCTCAGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCCCATTAAACACAGTGTGATAATATGTAACAGTTATCTCAGTA  1041

seq1  CCCTATAGGTTGAGAATTC  1063
      |||||||||||||||||||
seq2  CCCTATAGGTTGAGAATTC  1060