BAC Information

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BAC

Clone NameB6Ng01-133H04
Chromosome5 (Build37)
Map Location 74,549,750 - 74,660,510
singlet/doubletdoublet
Overlap geneRasl11b
Upstream geneFryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H04.bB6Ng01-133H04.g
ACCDH933991DH933992
length1,0481,121
definitionDH933991|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H04, 5' end.DH933992|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,549,750 - 74,550,798)(74,659,369 - 74,660,510)
sequence
gaattctgtgcaagagtaagctttttaatttggaggaagaaatctttatc
tctgctagcttaggaactatttgacaccaaattaactataaggatgctcc
taatgtgggcagatcagaatttggaaatctgatggggagtgggggaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaac
caggaggtatctgggggcagggaataactctatgtctccaatggggagct
ctcaaaggtgtgctgacaaccctgtagtgtcatgtgatccaccagacgtc
cttgacttttgtcctctgttaaaagccttttggggcctgggacctctaac
acaggacatgaatccatttagcaagaaggtggagaacatctattacccac
ctaccaaattgttctagtgaacagattctttttttttttaatatttattt
atttatttatttatttatttatttatttatttatttttggttttttgaga
cagggtttctttgtatagccctggctgtcctggaactcactttgtagacc
tggctggcctcagactcagaaatctgcctgactctgcctcctgagtgctg
ggattaaaggcgtgcgccaccaccacccggcatgaacagattcttgtgtg
aggtcaagcagaaaacaaagcttatgtccctaaaataacaatagacccaa
gaagaggaagtgccaaatgctgtggggatcctaactgataggacagaata
ggtgatctgtgtgtgtaactccccccgcccccagccctcctaaaaataga
tatgctccactcttgatccctagagcctggaagtggggtcctggtacata
caaccaaaattctgtaaatgagatcatcttgaatcatctgactgtctcta
catcaatgacaattgtccttcctaagagaaaaggcagaggagagtgaaac
atggggacctcaagtgggaagatggcagaagctgggtcctgaagctttca
aagcttgaaaacgtcagaacaataatttcttgactttggagagccact
gaattcctgacactgggaagaggatgagactcttcatagccttcacctac
caacaggcctcaagtccccacagtaaagtgtctgtcacatcacaccccat
agctgtcttggcctcgcagagctgattgtggacccaggtggatataatca
gttttttctgatcctgagcggttggttcttccgtccccacacggctgccc
tttgaatgccagcatcctgtctctgcagcatctttctctcagcctctgct
gaccacagcttttatcccacagtcacccttgtggaaaggcatggttctcc
atttctttgtataaatatattgggcttttttgtttgtttggtcctcattg
ctgaggtagaatgtgctgccagagtcttttgtggatgccctgtaatgtta
tggaaagctgagaccgtgttgcgttttaaaggcaggctgagcaccggact
ctgggatctgccttcctggctgggtttgtagttctgtctccagccaatgc
catctcctgaaataagtgctggagcccctctgtatgtgatgataatagtg
cctgctttgtagagccatcgtgaagagtgaaaattagaacagacataaag
accttcccacagatctgtcacgctatgacccttgaataaatattaacaat
aaataattgatccacatggagcctttaggatctgttttcttatattaagg
gtgctagtttttcttctgggaaacaggacttaagcaaattttcatgaaga
aggccaatagactgcaggaaggaaaggatgccagtgtggttccttctcat
ggtcccacgcagaacacagtgctgagtacccactgccatacaccctacct
ccaaactaaggccaggggaataggaacagctgggaacatcagccaccttg
ccagccattgcctttgtagagagggacctgaaggtgacactcaaagggta
aaggacatcactaccaaatggagcgagaagaggctgatctgggccagtgt
gagagaaataggaagcaaagataagagagggttgtgcagtctgcaatagg
atgctgcctcagggagatggccccacgaacctcaccccattcttacagtt
gtttactctgcagtcactagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74549750_74550798
seq2: B6Ng01-133H04.b_48_1095

seq1  GAATTCTGTGCAAGAGTAAGCTTTTTAATTTGGAGGAAGAAATCTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCAAGAGTAAGCTTTTTAATTTGGAGGAAGAAATCTTTATC  50

seq1  TCTGCTAGCTTAGGAACTATTTGACACCAAATTAACTATAAGGATGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGCTTAGGAACTATTTGACACCAAATTAACTATAAGGATGCTCC  100

seq1  TAATGTGGGCAGATCAGAATTTGGAAATCTGATGGGGAGTGGGG----GA  146
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  TAATGTGGGCAGATCAGAATTTGGAAATCTGATGGGGAGTGGGGGAAAGA  150

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAC  200

seq1  CAGGAGGTATCTGGGGGCAGGGAATAACTCTATGTCTCCAATGGGGAGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTATCTGGGGGCAGGGAATAACTCTATGTCTCCAATGGGGAGCT  250

seq1  CTCAAAGGTGTGCTGACAACCCTGTAGTGTCATGTGATCCACCAGACGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTGTGCTGACAACCCTGTAGTGTCATGTGATCCACCAGACGTC  300

seq1  CTTGACTTTTGTCCTCTGTTAAAAGCCTTTTGGGGCCTGGGACCTCTAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTTTGTCCTCTGTTAAAAGCCTTTTGGGGCCTGGGACCTCTAAC  350

seq1  ACAGGACATGAATCCATTTAGCAAGAAGGTGGAGAACATCTATTACCCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACATGAATCCATTTAGCAAGAAGGTGGAGAACATCTATTACCCAC  400

seq1  CTACCAAATTGTTCTAGTGAACAGATTCTTTTTTTTTTTAATATTTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAATTGTTCTAGTGAACAGATTCTTTTTTTTTTTAATATTTATTT  450

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGGTTTTTTGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGGTTTTTTGAGA  500

seq1  CAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  550

seq1  TGGCTGGCCTCAGACTCAGAAATCTGCCTGACTCTGCCTCCTGAGTGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTCAGACTCAGAAATCTGCCTGACTCTGCCTCCTGAGTGCTG  600

seq1  GGATTAAAGGCGTGCGCCACCACCACCCGGCATGAACAGATTCTTGTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCGCCACCACCACCCGGCATGAACAGATTCTTGTGTG  650

seq1  AGGTCAAGCAGAAAACAAAGCTTATGTCCCTAAAATAACAATAGACCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGCAGAAAACAAAGCTTATGTCCCTAAAATAACAATAGACCCAA  700

seq1  GAAGAGGAAGTGCCAAATGCTGTGGGGATCCTAACTGATAGGACAGAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGTGCCAAATGCTGTGGGGATCCTAACTGATAGGACAGAATA  750

seq1  GGTGATCTGTGTGTGTAACTCCCCCCGCCCCCAGCCCTCCTAAAAAATAG  796
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGATCTGTGTGTGTAACTCCCCCCGCCCCCAGCCCTCCT-AAAAATAG  799

seq1  ATATGCTCCACTCTTGATCCCTAGAGCCTGGAAGTGGGGTCCTGGTACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCCACTCTTGATCCCTAGAGCCTGGAAGTGGGGTCCTGGTACAT  849

seq1  ACAACCAAAATTCTGAAAATGAGATCATCTTGAATCATCTGACTGTCTCT  896
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAACCAAAATTCTGTAAATGAGATCATCTTGAATCATCTGACTGTCTCT  899

seq1  ACATCAATGACAATTGTCCTTCCT-AGAGAAAAGGCAGAGGAGAGTGAGA  945
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  ACATCAATGACAATTGTCCTTCCTAAGAGAAAAGGCAGAGGAGAGTGAAA  949

seq1  CATGGGGACC-CAGGTGGGAAGATGGGCAGAAGCTGGGTCCTGAAGCTTT  994
      |||||||||| || |||||||||| |||||||||||||||||||||||||
seq2  CATGGGGACCTCAAGTGGGAAGAT-GGCAGAAGCTGGGTCCTGAAGCTTT  998

seq1  CAAAGCTGGAAAAACGTCAGAACAAATAATTTCCTGGACCTTTGGAGAGG  1044
      ||||||| | ||||||||||||| ||||||||| ||   ||||||||| |
seq2  CAAAGCTTG-AAAACGTCAGAAC-AATAATTTCTTG--ACTTTGGAGA-G  1043

seq1  CCACT  1049
      |||||
seq2  CCACT  1048

seq1: chr5_74659369_74660510
seq2: B6Ng01-133H04.g_68_1188 (reverse)

seq1  GCTAGTTGGACTGCAGATGTAAACAACTGGCTAAGGAATTGGGGGTGAGG  50
      ||||||  ||||||||| |||||||||||  ||| ||||  ||||||| |
seq2  GCTAGT--GACTGCAGA-GTAAACAACTG--TAA-GAAT--GGGGTGA-G  41

seq1  GTTCTGTGGGGCCATCCTCCCTGGGGGGCAGGCATCCTATCTGCCGGGCT  100
      |||| |||||||||| ||||||  | |||| ||||||||| || | | ||
seq2  GTTC-GTGGGGCCAT-CTCCCT--GAGGCA-GCATCCTAT-TG-CAGACT  84

seq1  GCACAACCCTCTCTTATCTGTGGCTTTCCTATGTCTCTCACACTGGGCCC  150
      ||||||||||||||||||| ||   ||||||| ||||||||||| |||||
seq2  GCACAACCCTCTCTTATCTTTG--CTTCCTATTTCTCTCACACT-GGCCC  131

seq1  AGATCAGCCTCTTCTCGCTCCATTTGGTAGTGATGTTCCTTTACCCTTTG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGATCAGCCTCTTCTCGCTCCATTTGGTAGTGATG-TCCTTTACCCTTTG  180

seq1  AGTGTCACCTTCAGGTCCCTCTCTTACAAAGGCAATGGCTGGCAAGGTGG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGTCACCTTCAGGTCCCTCTC-TACAAAGGCAATGGCTGGCAAGGTGG  229

seq1  CTGATGTTCCCAGCTGTTCCTATTCCCCTGGCCTTAGTTTGGAGGTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTCCCAGCTGTTCCTATTCCCCTGGCCTTAGTTTGGAGGTAGGG  279

seq1  TGTATGGCAGTGGGTACTCAGCACTGTGTTCTGCGTGGGACCATGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCAGTGGGTACTCAGCACTGTGTTCTGCGTGGGACCATGAGAAG  329

seq1  GAACCACACTGGCATCCTTTCCTTCCTGCAGTCTATTGGCCTTCTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACACTGGCATCCTTTCCTTCCTGCAGTCTATTGGCCTTCTTCATG  379

seq1  AAAATTTGCTTAAGTCCTGTTTCCCAGAAGAAAAACTAGCACCCTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCTTAAGTCCTGTTTCCCAGAAGAAAAACTAGCACCCTTAATA  429

seq1  TAAGAAAACAGATCCTAAAGGCTCCATGTGGATCAATTATTTATTGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACAGATCCTAAAGGCTCCATGTGGATCAATTATTTATTGTTAA  479

seq1  TATTTATTCAAGGGTCATAGCGTGACAGATCTGTGGGAAGGTCTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCAAGGGTCATAGCGTGACAGATCTGTGGGAAGGTCTTTATGT  529

seq1  CTGTTCTAATTTTCACTCTTCACGATGGCTCTACAAAGCAGGCACTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAATTTTCACTCTTCACGATGGCTCTACAAAGCAGGCACTATTA  579

seq1  TCATCACATACAGAGGGGCTCCAGCACTTATTTCAGGAGATGGCATTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACATACAGAGGGGCTCCAGCACTTATTTCAGGAGATGGCATTGGC  629

seq1  TGGAGACAGAACTACAAACCCAGCCAGGAAGGCAGATCCCAGAGTCCGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGAACTACAAACCCAGCCAGGAAGGCAGATCCCAGAGTCCGGT  679

seq1  GCTCAGCCTGCCTTTAAAACGCAACACGGTCTCAGCTTTCCATAACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTGCCTTTAAAACGCAACACGGTCTCAGCTTTCCATAACATTA  729

seq1  CAGGGCATCCACAAAAGACTCTGGCAGCACATTCTACCTCAGCAATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATCCACAAAAGACTCTGGCAGCACATTCTACCTCAGCAATGAGG  779

seq1  ACCAAACAAACAAAAAAGCCCAATATATTTATACAAAGAAATGGAGAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAACAAAAAAGCCCAATATATTTATACAAAGAAATGGAGAACC  829

seq1  ATGCCTTTCCACAAGGGTGACTGTGGGATAAAAGCTGTGGTCAGCAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTCCACAAGGGTGACTGTGGGATAAAAGCTGTGGTCAGCAGAGG  879

seq1  CTGAGAGAAAGATGCTGCAGAGACAGGATGCTGGCATTCAAAGGGCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAAGATGCTGCAGAGACAGGATGCTGGCATTCAAAGGGCAGCC  929

seq1  GTGTGGGGACGGAAGAACCAACCGCTCAGGATCAGAAAAAACTGATTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGACGGAAGAACCAACCGCTCAGGATCAGAAAAAACTGATTATA  979

seq1  TCCACCTGGGTCCACAATCAGCTCTGCGAGGCCAAGACAGCTATGGGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGGGTCCACAATCAGCTCTGCGAGGCCAAGACAGCTATGGGGTG  1029

seq1  TGATGTGACAGACACTTTACTGTGGGGACTTGAGGCCTGTTGGTAGGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGACAGACACTTTACTGTGGGGACTTGAGGCCTGTTGGTAGGTGA  1079

seq1  AGGCTATGAAGAGTCTCATCCTCTTCCCAGTGTCAGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGAAGAGTCTCATCCTCTTCCCAGTGTCAGGAATTC  1121