BAC Information

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BAC

Clone NameB6Ng01-133M01
Chromosome5 (Build37)
Map Location 73,783,817 - 73,907,149
singlet/doubletdoublet
Overlap geneLOC100042205, C130090K23Rik, LOC627733, Dcun1d4
Upstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154
Downstream geneBC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b, Scfd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M01.bB6Ng01-133M01.g
ACCDH934220DH934221
length4291,153
definitionDH934220|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M01, 5' end.DH934221|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,783,817 - 73,784,251)(73,905,978 - 73,907,149)
sequence
ttcctagagcaaagtcactcctctcctgctctgccttggagagaggtcag
aggtcacgatggtcagaggctcttctttccttcagtctgttcaggtgtca
gtgttctggctgaagcaccccaccccccctgttctcgcttttgtcacata
tctctctaggatatttgcctttaaaatcttgaccacttcttatattgtct
tggtttctttttctcaggaaccaacatttgactcaccgtctctgaaggag
atggtagaaatggtggctgaagccagatgtgtggtgtggtgctatatgcc
catagtcctagtgtttggtggtggtggtggggggctgaggcagggggctg
aggcaggtggatttctagttcatggctagccagggctacatgaggagttc
tagggcagacagcacatactgagaccctg
gaattcacatgaagatggaaagaaagaacctattccagatagttctctga
ggacacacacatacactcacacaagcacaattttaaaacccaattgtttt
ttgcctgaaagttcgaattcgttttatttagtatttcaagagaaaacttc
tatctttttaattaagccaattactgtagcctttcttcccacgttcaaca
gtttaaaatactgctggcattttttagtaggtctattttagtattttagt
attgtctcagaaaatcaagttttaaagacaacttgaggtcacctggataa
gccaaaggcctttgatttagtttacccatcctactggcagtttaccttgg
gacatgaattcaccagtgggtacctgagtcgggtcttctggctccctgta
accaccggacattataagcttcagcaagaatcccagtagagaggatttcc
cataagacttggcaacttgtatgcccagtctctattcattcccaagcaag
aggacaaggctatttctgattagcctcattttggttagcctgctgtctca
gttcatgacactgagtgcggctcattctgccctgtcaagagtcttcactc
cactgagtgaactcactcaatgtcagagatttcacagttttgcctgataa
atacatagcagtcttagacatctcaccagtacataggattttattgcatt
atcttgaacacatcagtgaattacccattcatataaaactagtaactttt
tttttaagatttattatatgtaagtacactgtagctgtcttcagacactc
cagaagagggtgtcagatctcattacagatggttgtgagccaccatgtgg
gttgctgggatttgaactcaagacctttgcaagagcagtcagcactctta
accactgagccatctctccagcccaaaactagtaacctttaaatgaacca
atgttcctactttatttaagacaaagaaatgccctttatcttctagtaga
gggactccggcacgtactgttattttctgacgttcttcttcctctgtgct
ttctctgttcacattctctatttcgagctacttgctcagactcatctcct
atctgtccatgtagaatcaggaacccaggcagccattgaatgtcgcctct
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73783817_73784251
seq2: B6Ng01-133M01.b_47_481

seq1  GAATTCTTCCTAGAGCAAAGTCACTCCTCTCCTGCTCTGCCTTGGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTAGAGCAAAGTCACTCCTCTCCTGCTCTGCCTTGGAGAGA  50

seq1  GGTCAGAGGTCACGATGGTCAGAGGCTCTTCTTTCCTTCAGTCTGTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGTCACGATGGTCAGAGGCTCTTCTTTCCTTCAGTCTGTTCAG  100

seq1  GTGTCAGTGTTCTGGCTGAAGCACCCCACCCCCCCTGTTCTCGCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTGTTCTGGCTGAAGCACCCCACCCCCCCTGTTCTCGCTTTTGT  150

seq1  CACATATCTCTCTAGGATATTTGCCTTTAAAATCTTGACCACTTCTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCTCTCTAGGATATTTGCCTTTAAAATCTTGACCACTTCTTATA  200

seq1  TTGTCTTGGTTTCTTTTTCTCAGGAACCAACATTTGACTCACCGTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGTTTCTTTTTCTCAGGAACCAACATTTGACTCACCGTCTCTG  250

seq1  AAGGAGATGGTAGAAATGGTGGCTGAAGCCAGATGTGTGGTGTGGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGGTAGAAATGGTGGCTGAAGCCAGATGTGTGGTGTGGTGCTA  300

seq1  TATGCCCATAGTCCTAGTGTTTGGTGGTGGTGGTGGGGGGCTGAGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATAGTCCTAGTGTTTGGTGGTGGTGGTGGGGGGCTGAGGCAGG  350

seq1  GGGCTGAGGCAGGTGGATTTCGAGTTCAAGGCTAGCCAGGGCTACATGAG  400
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  GGGCTGAGGCAGGTGGATTTCTAGTTCATGGCTAGCCAGGGCTACATGAG  400

seq1  GAGTTCTAGGCCAGACAGTACATACTGAGACCCTG  435
      |||||||||| ||||||| ||||||||||||||||
seq2  GAGTTCTAGGGCAGACAGCACATACTGAGACCCTG  435

seq1: chr5_73905978_73907149
seq2: B6Ng01-133M01.g_68_1220 (reverse)

seq1  TTCAGAGGCGGAACATCTCATGTGCTGCCTTGTGCTCCTGATCTTCCATG  50
      ||||||||||  |||| |||   |||||| || | |||||||  | ||| 
seq2  TTCAGAGGCG--ACAT-TCAATGGCTGCC-TGGGTTCCTGATTCTACAT-  45

seq1  GGACAGATAGGGAGATGAGTCTGAGCAAAAGTAGCTCGAAAATAGAGAAA  100
      ||||||||| ||||||||||||||||  |||||||||| |||||||||| 
seq2  GGACAGATA-GGAGATGAGTCTGAGC--AAGTAGCTCG-AAATAGAGAA-  90

seq1  TGGTGAACAAGAGAAAAGCACAGAGGAAAGAAGAAAACGTCAGGAAAAAT  150
        |||||| |||| |||||||||||| ||||||  ||||||||  |||||
seq2  -TGTGAAC-AGAG-AAAGCACAGAGG-AAGAAG--AACGTCAG--AAAAT  132

seq1  AACAGTACGTGCCGGAGTCCCTCTTACTTAGAGATAAAGGGCATTTCTTT  200
      ||||||||||||||||||||||| ||||   |||||||||||||||| ||
seq2  AACAGTACGTGCCGGAGTCCCTC-TACTAGAAGATAAAGGGCATTTC-TT  180

seq1  TGTCTTAAATAAAGTAGGAACATTTGGTTCATTTAAAGGTTACTAGTTTT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCTTAAATAAAGTAGGAACA-TTGGTTCATTTAAAGGTTACTAGTTTT  229

seq1  GGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGCTCTTGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGCTCTTGCAAAG  279

seq1  GTCTTGAGTTCAAATCCCAGCAA-CCACATGGTGGCTCACAACCATCTGT  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCTTGAGTTCAAATCCCAGCAACCCACATGGTGGCTCACAACCATCTGT  329

seq1  AATGAGATCTGACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTGACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTA  379

seq1  CTTACATATAATAAATCTT-AAAAAAAAGTTACTAGTTTTATATGAATGG  448
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTACATATAATAAATCTTAAAAAAAAAGTTACTAGTTTTATATGAATGG  429

seq1  GTAATTCACTGATGTGTTCAAGATAATGCAATAAAATCCTATGTACTGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCACTGATGTGTTCAAGATAATGCAATAAAATCCTATGTACTGGT  479

seq1  GAGATGTCTAAGACTGCTATGTATTTATCAGGCAAAACTGTGAAATCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCTAAGACTGCTATGTATTTATCAGGCAAAACTGTGAAATCTCT  529

seq1  GACATTGAGTGAGTTCACTCAGTGGAGTGAAGACTCTTGACAGGGCAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGTGAGTTCACTCAGTGGAGTGAAGACTCTTGACAGGGCAGAA  579

seq1  TGAGCCGCACTCAGTGTCATGAACTGAGACAGCAGGCTAACCAAAATGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGCACTCAGTGTCATGAACTGAGACAGCAGGCTAACCAAAATGAG  629

seq1  GCTAATCAGAAATAGCCTTGTCCTCTTGCTTGGGAATGAATAGAGACTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCAGAAATAGCCTTGTCCTCTTGCTTGGGAATGAATAGAGACTGG  679

seq1  GCATACAAGTTGCCAAGTCTTATGGGAAATCCTCTCTACTGGGATTCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAAGTTGCCAAGTCTTATGGGAAATCCTCTCTACTGGGATTCTTG  729

seq1  CTGAAGCTTATAATGTCCGGTGGTTACAGGGAGCCAGAAGACCCGACTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTATAATGTCCGGTGGTTACAGGGAGCCAGAAGACCCGACTCA  779

seq1  GGTACCCACTGGTGAATTCATGTCCCAAGGTAAACTGCCAGTAGGATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCACTGGTGAATTCATGTCCCAAGGTAAACTGCCAGTAGGATGGG  829

seq1  TAAACTAAATCAAAGGCCTTTGGCTTATCCAGGTGACCTCAAGTTGTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAATCAAAGGCCTTTGGCTTATCCAGGTGACCTCAAGTTGTCTT  879

seq1  TAAAACTTGATTTTCTGAGACAATACTAAAATACTAAAATAGACCTACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGATTTTCTGAGACAATACTAAAATACTAAAATAGACCTACTA  929

seq1  AAAAATGCCAGCAGTATTTTAAACTGTTGAACGTGGGAAGAAAGGCTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCAGCAGTATTTTAAACTGTTGAACGTGGGAAGAAAGGCTACA  979

seq1  GTAATTGGCTTAATTAAAAAGATAGAAGTTTTCTCTTGAAATACTAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGCTTAATTAAAAAGATAGAAGTTTTCTCTTGAAATACTAAATA  1029

seq1  AAACGAATTCGAACTTTCAGGCAAAAAACAATTGGGTTTTAAAATTGTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAATTCGAACTTTCAGGCAAAAAACAATTGGGTTTTAAAATTGTGC  1079

seq1  TTGTGTGAGTGTATGTGTGTGTCCTCAGAGAACTATCTGGAATAGGTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAGTGTATGTGTGTGTCCTCAGAGAACTATCTGGAATAGGTTCT  1129

seq1  TTCTTTCCATCTTCATGTGAATTC  1172
      ||||||||||||||||||||||||
seq2  TTCTTTCCATCTTCATGTGAATTC  1153