BAC Information

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BAC

Clone NameB6Ng01-134E18
Chromosome5 (Build37)
Map Location 93,508,992 - 93,641,738
singlet/doubletdoublet
Overlap geneSept11, Ccni, LOC100040826, 2010109A12Rik
Upstream geneG3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56
Downstream geneCcng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E18.bB6Ng01-134E18.g
ACCDH934631DH934632
length345941
definitionDH934631|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E18, 5' end.DH934632|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,508,992 - 93,509,336)(93,640,798 - 93,641,738)
sequence
actctgtagaccaggctggccttgaactcagaaatccaccagcctctgcc
tcctaagtgctgggattaaaggcatgcaccaccactgtctggcatagctc
cagtcttaaggctggttttgttgtgtttgtttgtttgtttgtttttgttt
tgtaaaatgaaatggctgggcttcatgcatcctttattggattctacaga
aggtggagaatgtaacttctctggaatctgtcactgcaggaaagcatacc
ccgggcgcatagcaaacctctcattttcctggacagagctctgtgggccc
tgttccgcctgcctcagggcacagccgctcagggggggggggggg
gaattctttatgtagccaggtggtggtggctcatgcctttaatcccagca
atcgggaggcagaggcaggcagatctctgagttcgaggccagcctggtct
ccagagtgagttctaggacagccagggctacacagagaaaccctgtctca
aaacaaaacaaaacaaaacaaaacaaaaaactgagagagagagagaaaga
gagagacagatagagagatagagagatccttatgtttttaaattgatgtt
tccttcctcctgaggtcatggttgttggtttgggaaagttactcttgcat
tcagtctctgcagagatgggtgagagcagcaggtagattctagagacacg
tgattatttataatggtgtgcagattgctcctgttctcaccctcttctac
aagacagtgccttcataaattgctgcatgaaaacttcatctaaagagctc
atttaagacaaaggagacaggcaattctactcactcaatatcaataggcc
aacactatggaaatcagtgtgtggcagttcctcaggaagatgggaactaa
tcaatctccagatccagctctaccactcttgggcacacccaaaggacact
ccatcctaccgctgaggactgctcaaccccggtcattgctgctcaatcta
gaatagtcagaaattggacacctagatgtctctcatcagataaatgggca
aagaaaatgtggttcattttcacaatagaatgtcactcagctgttaaaaa
actgaaatcatgaaattcgtaggtaaatggatggaaccagaaaaaaaaat
cattctggtgaggtaaccgagaaagacaaatatggtatatgtccacttga
atgtggatattagccattagtcatgattactaagctataaaccactgaac
cacagaggttaggtatagagtaagggatgggggtggggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93508992_93509336
seq2: B6Ng01-134E18.b_50_394

seq1  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCAGCCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCAGCCTCTGCC  50

seq1  TCCTAAGTGCTGGGATTAAAGGCATGCACCACCACTGTCTGGCATAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGCTGGGATTAAAGGCATGCACCACCACTGTCTGGCATAGCTC  100

seq1  CAGTCTTAAGGCTGGTTTTGTTGTGTTTGTTTGTTTGTTTGTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAAGGCTGGTTTTGTTGTGTTTGTTTGTTTGTTTGTTTTTGTTT  150

seq1  TGTAAAATGAAATGGCTGGGCTTCATGCATCCTTTATTGGATTCTACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGAAATGGCTGGGCTTCATGCATCCTTTATTGGATTCTACAGA  200

seq1  AGGTGGAGAATGTAACTTCTCTGGAATCTGTCACTGCAGGAAAGCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGAATGTAACTTCTCTGGAATCTGTCACTGCAGGAAAGCATACC  250

seq1  CCGGGCGCATAGCAAACCTCTCATTTTCCTGGACAGAGCTCTGTGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCGCATAGCAAACCTCTCATTTTCCTGGACAGAGCTCTGTGGGCCC  300

seq1  TGTTCCGCCTGCCTCAGGGCACAGCCGCTCAGGGGGGGGGGGGGG  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGCCTGCCTCAGGGCACAGCCGCTCAGGGGGGGGGGGGGG  345

seq1: chr5_93640798_93641738
seq2: B6Ng01-134E18.g_67_1007 (reverse)

seq1  TCTCCCCA-CCCCATCCCTTACTCTATACCTAACCTCTGTGGTTCAGTGG  49
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCACCCCCATCCCTTACTCTATACCTAACCTCTGTGGTTCAGTGG  50

seq1  TTTATAGCTTAGTAATCATGACTTAATGGCTAATATCCACATTCAAGTGG  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATAGCTTAGTAATCATGAC-TAATGGCTAATATCCACATTCAAGTGG  99

seq1  ACATATACCATATTTGTCTTTCTCGGTTACCTCACCAGAATGATTTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACCATATTTGTCTTTCTCGGTTACCTCACCAGAATGATTTTTTT  149

seq1  TTCTGGTTCCATCCATTTACCTACGAATTTCATGATTTCAGTTTTTTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCCATCCATTTACCTACGAATTTCATGATTTCAGTTTTTTAAC  199

seq1  AGCTGAGTGACATTCTATTGTGAAAATGAACCACATTTTCTTTGCCCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGACATTCTATTGTGAAAATGAACCACATTTTCTTTGCCCATT  249

seq1  TATCTGATGAGAGACATCTAGGTGTCCAATTTCTGACTATTCTAGATTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATGAGAGACATCTAGGTGTCCAATTTCTGACTATTCTAGATTGA  299

seq1  GCAGCAATGACCGGGGTTGAGCAGTCCTCAGCGGTAGGATGGAGTGTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATGACCGGGGTTGAGCAGTCCTCAGCGGTAGGATGGAGTGTCCT  349

seq1  TTGGGTGTGCCCAAGAGTGGTAGAGCTGGATCTGGAGATTGATTAGTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTGCCCAAGAGTGGTAGAGCTGGATCTGGAGATTGATTAGTTCC  399

seq1  CATCTTCCTGAGGAACTGCCACACACTGATTTCCATAGTGTTGGCCTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTGAGGAACTGCCACACACTGATTTCCATAGTGTTGGCCTATT  449

seq1  GATATTGAGTGAGTAGAATTGCCTGTCTCCTTTGTCTTAAATGAGCTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAGTGAGTAGAATTGCCTGTCTCCTTTGTCTTAAATGAGCTCTT  499

seq1  TAGATGAAGTTTTCATGCAGCAATTTATGAAGGCACTGTCTTGTAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGTTTTCATGCAGCAATTTATGAAGGCACTGTCTTGTAGAAGA  549

seq1  GGGTGAGAACAGGAGCAATCTGCACACCATTATAAATAATCACGTGTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAACAGGAGCAATCTGCACACCATTATAAATAATCACGTGTCTC  599

seq1  TAGAATCTACCTGCTGCTCTCACCCATCTCTGCAGAGACTGAATGCAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTACCTGCTGCTCTCACCCATCTCTGCAGAGACTGAATGCAAGA  649

seq1  GTAACTTTCCCAAACCAACAACCATGACCTCAGGAGGAAGGAAACATCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTTCCCAAACCAACAACCATGACCTCAGGAGGAAGGAAACATCAA  699

seq1  TTTAAAAACATAAGGATCTCTCTATCTCTCTATCTGTCTCTCTCTTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACATAAGGATCTCTCTATCTCTCTATCTGTCTCTCTCTTTCTC  749

seq1  TCTCTCTCTCAGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGAGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCAGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGAGACAG  799

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGGAGACCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGGAGACCAGG  849

seq1  CTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCCGATTGCTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCCGATTGCTGGGA  899

seq1  TTAAAGGCATGAGCCACCACCACCTGGCTACATAAAGAATTC  941
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCATGAGCCACCACCACCTGGCTACATAAAGAATTC  941