BAC Information

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BAC

Clone NameB6Ng01-134J16
Chromosome5 (Build37)
Map Location 82,348,284 - 82,475,173
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039506, Lphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J16.bB6Ng01-134J16.g
ACCDH934860DH934861
length1,1441,120
definitionDH934860|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J16, 5' end.DH934861|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,474,023 - 82,475,173)(82,348,284 - 82,349,405)
sequence
gaattctttgtttctatgggactctgaggtcacattcctttctgctaata
agacaggtcatgtctggagaataacttttttcctgccctgtgcccgttct
tatgttgttagcaaatggaagacaaaggctaggctagatttgctctggta
aacagatcacctaaaaaaacaagtagagtcactgtggaattgatgaaact
ttaaattgtggtgaggcatccactaagcaaaatgtcactgaattagcatc
atagtaggctctgacccagcttctcactgatctccctactccgtggacag
tggagagagagaatcaggaggagtcgaataagagagaacgagagaactga
ggtctgctgaccaaataaacttctctgtactcttccacaattattgtttc
catgtggaagtgattggggtaggaactggacttttcttactgtgagaaat
ttagcaatttgttacttaggattcttgtgattccttatctaatggtcatc
ttacaaaccatatcttatttggctctccacaatcccacactagtatttgt
aatagattgccactcgttaattctgataaccttttcccttttaagacggt
aatgttcccaactatttcttctcaaaaacgtgacaactttaccaggaatt
aaatacaaatgtccttcagctgagtttagagtcatctctctggaacatag
tattgtcccagttccacacacatcacgaaagtgttactgtaatagattca
gttcataatgaagttgatcatgttgtgggactcctcctagccaagatgta
atgtcacatacttttatatccattttcacttttgtgaagactggaattgc
accaccaaaactgtcttattacagtcagagaggtgactctacaagatagg
tctgacaaggtctcttctttcatttcctcctttactacacttatgtcaag
ttcaacaggtagtacaaataactttttctactcgcatttcagttttcttt
gttaaatgtgtttgatcacaagccatacagggattaccttatgaggtgat
accttgtttatagtgtatgttaaagttgtctttcatattctcacatgtca
acttcggttgtaactgtctcatttctatctatgagttaattttt
gaattcctggtaattgtgagggttatttctcaaaacagtttctaagagac
cctaacaaaagcacatttgcatagtgggttccggcaatggtcagggtgac
tttctttgaatgagcactctttgaacccaggaagcaggtgggtagaggaa
tattgctatctgttttatgattagcatacctttacaaaggccacattccc
aagcctgggcctaaaggcctagaattctgtttttactttgttatactttc
aacacacacaccacacacacacacacacacacacacacacacacacacac
acaatctacctacagactgctacatctatgttatatttaggcaatatgat
atatcacaggtaaagccctaggggttataagaagttaataataatacaaa
tcaaattcgcttgagtttttacttttgcaagaattcagtttttcagagac
tatgattgattcctctcatacatgtgaaaactgagactcaaagtcatttt
tgtagttggtagcagtcctgaatctgcccgagatatcctaagtctcattt
taaaagtagataaaataagggtggtagaggcagacaacagcaaggatgct
tatttaatacatgtggatcacaccaacaagacttaataccccttcccagc
tgccatccccacaccccatccctgcccctctctgttcaccccttgattcc
ctgagtttgcctgtaacaggagcagcaggttcttcggcttgtgtactgtc
tccatcccgacactattcactttgcatctcccaatctctggtttctatac
ctcatataaactaaatataagcaatctataccttttgtatcccgattttt
acttttgatgcccttagctgttgggtattgatgagaacaggagatagaaa
caaatccggcagttcaggagcaggacctcaacggaaatcttgtcctagct
ctgttctagtcagaggcaagaaatctaacaggtgttcggaggcttggggt
gcctgttctaattctattgttctttcttcttctatatagcttgtctagga
gctatccaggagggtatgaccaggaagacaggatccttcagtgaaacctt
ttatggaacccagcctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82474023_82475173
seq2: B6Ng01-134J16.b_45_1188 (reverse)

seq1  AAAAATTTAGACTCATAGATAGACATGAGACAGGTACATACCGAAGTTGA  50
       |||| ||| ||||||||||||| ||||||||| |||| |||||||||||
seq2  -AAAAATTA-ACTCATAGATAGAAATGAGACAGTTACA-ACCGAAGTTGA  47

seq1  CATGTGAAGATATGAAAGACAAACTTTACATACACTAATAACAAGGTAAT  100
      |||||||  |||||||||||||  || ||||||||||  |||||||| ||
seq2  CATGTGAGAATATGAAAGACAACTTTAACATACACTATAAACAAGGT-AT  96

seq1  CACTCAATAAGGTAATCCCTGTATGGCTTGTGATTCAAACACATTTAACA  150
      |||   ||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CACCTCATAAGGTAATCCCTGTATGGCTTGTGA-TCAAACACATTTAAC-  144

seq1  AAAGAAAACTGAAATGCGAGTAGAAAAAGTTATTTGTTACTACCTGTTGA  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGAAAACTGAAATGCGAGTAGAAAAAGTTATTTG-TACTACCTGTTGA  193

seq1  ACTTGACATAAGTGTAGTAAAGGAGGAAATGAAAGAAGAGACCTTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACATAAGTGTAGTAAAGGAGGAAATGAAAGAAGAGACCTTGTCAG  243

seq1  ACCTATCTTGTAGAGTCACCTCTCTGACTGTAATAAGACAGTTTTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTTGTAGAGTCACCTCTCTGACTGTAATAAGACAGTTTTGGTGG  293

seq1  TGCAATTCCAGTCTTCACAAAAGTGAAAATGGATATAAAAGTATGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCCAGTCTTCACAAAAGTGAAAATGGATATAAAAGTATGTGACA  343

seq1  TTACATCTTGGCTAGGAGGAGTCCCACAACATGATCAACTTCATTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTGGCTAGGAGGAGTCCCACAACATGATCAACTTCATTATGAA  393

seq1  CTGAATCTATTACAGTAACACTTTCGTGATGTGTGTGGAACTGGGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTATTACAGTAACACTTTCGTGATGTGTGTGGAACTGGGACAAT  443

seq1  ACTATGTTCCAGAGAGATGACTCTAAACTCAGCTGAAGGACATTTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTCCAGAGAGATGACTCTAAACTCAGCTGAAGGACATTTGTATT  493

seq1  TAATTCCTGGTAAAGTTGTCACGTTTTTGAGAAGAAATAGTTGGGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTGGTAAAGTTGTCACGTTTTTGAGAAGAAATAGTTGGGAACAT  543

seq1  TACCGTCTTAAAAGGGAAAAGGTTATCAGAATTAACGAGTGGCAATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTCTTAAAAGGGAAAAGGTTATCAGAATTAACGAGTGGCAATCTAT  593

seq1  TACAAATACTAGTGTGGGATTGTGGAGAGCCAAATAAGATATGGTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATACTAGTGTGGGATTGTGGAGAGCCAAATAAGATATGGTTTGTA  643

seq1  AGATGACCATTAGATAAGGAATCACAAGAATCCTAAGTAACAAATTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCATTAGATAAGGAATCACAAGAATCCTAAGTAACAAATTGCTA  693

seq1  AATTTCTCACAGTAAGAAAAGTCCAGTTCCTACCCCAATCACTTCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCACAGTAAGAAAAGTCCAGTTCCTACCCCAATCACTTCCACAT  743

seq1  GGAAACAATAATTGTGGAAGAGTACAGAGAAGTTTATTTGGTCAGCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATAATTGTGGAAGAGTACAGAGAAGTTTATTTGGTCAGCAGAC  793

seq1  CTCAGTTCTCTCGTTCTCTCTTATTCGACTCCTCCTGATTCTCTCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTCTCGTTCTCTCTTATTCGACTCCTCCTGATTCTCTCTCTCC  843

seq1  ACTGTCCACGGAGTAGGGAGATCAGTGAGAAGCTGGGTCAGAGCCTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCACGGAGTAGGGAGATCAGTGAGAAGCTGGGTCAGAGCCTACTA  893

seq1  TGATGCTAATTCAGTGACATTTTGCTTAGTGGATGCCTCACCACAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAATTCAGTGACATTTTGCTTAGTGGATGCCTCACCACAATTTA  943

seq1  AAGTTTCATCAATTCCACAGTGACTCTACTTGTTTTTTTAGGTGATCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCATCAATTCCACAGTGACTCTACTTGTTTTTTTAGGTGATCTGT  993

seq1  TTACCAGAGCAAATCTAGCCTAGCCTTTGTCTTCCATTTGCTAACAACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGAGCAAATCTAGCCTAGCCTTTGTCTTCCATTTGCTAACAACAT  1043

seq1  AAGAACGGGCACAGGGCAGGAAAAAAGTTATTCTCCAGACATGACCTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGGGCACAGGGCAGGAAAAAAGTTATTCTCCAGACATGACCTGTC  1093

seq1  TTATTAGCAGAAAGGAATGTGACCTCAGAGTCCCATAGAAACAAAGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCAGAAAGGAATGTGACCTCAGAGTCCCATAGAAACAAAGAATT  1143

seq1  C  1151
      |
seq2  C  1144

seq1: chr5_82348284_82349405
seq2: B6Ng01-134J16.g_69_1188

seq1  GAATTCCTGGTAATTGTGAGGGTTATTTCTCAAAACAGTTTCTAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTAATTGTGAGGGTTATTTCTCAAAACAGTTTCTAAGAGAC  50

seq1  CCTAACAAAAGCACATTTGCATAGTGGGTTCCGGCAATGGTCAGGGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAAAGCACATTTGCATAGTGGGTTCCGGCAATGGTCAGGGTGAC  100

seq1  TTTCTTTGAATGAGCACTCTTTGAACCCAGGAAGCAGGTGGGTAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAATGAGCACTCTTTGAACCCAGGAAGCAGGTGGGTAGAGGAA  150

seq1  TATTGCTATCTGTTTTATGATTAGCATACCTTTACAAAGGCCACATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTATCTGTTTTATGATTAGCATACCTTTACAAAGGCCACATTCCC  200

seq1  AAGCCTGGGCCTAAAGGCCTAGAATTCTGTTTTTACTTTGTTATACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGCCTAAAGGCCTAGAATTCTGTTTTTACTTTGTTATACTTTC  250

seq1  AACACACACACCACACACACACACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACCACACACACACACACACACACACACACACACACACACAC  300

seq1  ACAATCTACCTACAGACTGCTACATCTATGTTATATTTAGGCAATATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTACCTACAGACTGCTACATCTATGTTATATTTAGGCAATATGAT  350

seq1  ATATCACAGGTAAAGCCCTAGGGGTTATAAGAAGTTAATAATAATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGGTAAAGCCCTAGGGGTTATAAGAAGTTAATAATAATACAAA  400

seq1  TCAAATTCGCTTGAGTTTTTACTTTTGCAAGAATTCAGTTTTTCAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCGCTTGAGTTTTTACTTTTGCAAGAATTCAGTTTTTCAGAGAC  450

seq1  TATGATTGATTCCTCTCATACATGTGAAAACTGAGACTCAAAGTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGATTCCTCTCATACATGTGAAAACTGAGACTCAAAGTCATTTT  500

seq1  TGTAGTTGGTAGCAGTCCTGAATCTGCCCGAGATATCCTAAGTCTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTGGTAGCAGTCCTGAATCTGCCCGAGATATCCTAAGTCTCATTT  550

seq1  TAAAAGTAGATAAAATAAGGGTGGTAGAGGCAGACAACAGCAAGGATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGATAAAATAAGGGTGGTAGAGGCAGACAACAGCAAGGATGCT  600

seq1  TATTTAATACATGTGGATCACACCAACAAGACTTAATACCCCTTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATACATGTGGATCACACCAACAAGACTTAATACCCCTTCCCAGC  650

seq1  TGCCATCCCCACACCCCATCCCTGCCCCTCTCTGTTCACCCCTTGATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCCCACACCCCATCCCTGCCCCTCTCTGTTCACCCCTTGATTCC  700

seq1  CTGAGTTTGCCTGTAACAGGAGCAGCAGGTTCTTCGGCTTGTGTACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGCCTGTAACAGGAGCAGCAGGTTCTTCGGCTTGTGTACTGTC  750

seq1  TCCATCCCGACACTATTCACTTTGCATCTCCCAATCTCTGGTTTCTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCGACACTATTCACTTTGCATCTCCCAATCTCTGGTTTCTATAC  800

seq1  CTCATATAAACTAAATATAAGCAATCTATACCTTTTGTATCCCGATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATAAACTAAATATAAGCAATCTATACCTTTTGTATCCCGATTTTT  850

seq1  ACTTTTGATGCCCTTAGCTGTTGGGTATTGATGAGAACAGGAGATAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATGCCCTTAGCTGTTGGGTATTGATGAGAACAGGAGATAGAAA  900

seq1  CAAATCCGGCAGTTCAGGAGCAGGGACCTCAACGGAAATCTTGTCCTAGG  950
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  CAAATCCGGCAGTTCAGGAGCA-GGACCTCAACGGAAATCTTGTCCTA-G  948

seq1  CTCTGTTCTAGTCAGAGGCAAGAAATCTAACAGGTGTTCGGAGGCTT-GG  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTGTTCTAGTCAGAGGCAAGAAATCTAACAGGTGTTCGGAGGCTTGGG  998

seq1  GTGCCTGTTCTAATTTCTATTGTCTCTTTTCTTCTTCTATATAGC-TGTC  1048
      ||||||||||||| ||||||||| || |||||||||||||||||| ||||
seq2  GTGCCTGTTCTAA-TTCTATTGT-TC-TTTCTTCTTCTATATAGCTTGTC  1045

seq1  TAGAAGCTATCCAGGAGGGTATGACCAGG-AGACAGGAT-CTTCAGTGGA  1096
      ||| ||||||||||||||||||||||||| ||||||||| |||||||| |
seq2  TAGGAGCTATCCAGGAGGGTATGACCAGGAAGACAGGATCCTTCAGTGAA  1095

seq1  AACCTTTATGGAACCCAGCCCTGTAA  1122
      | | |||||||||||||| |||||||
seq2  ACCTTTTATGGAACCCAG-CCTGTAA  1120