BAC Information

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BAC

Clone NameB6Ng01-134N22
Chromosome5 (Build37)
Map Location 35,461,694 - 35,599,034
singlet/doubletdoublet
Overlap genenone
Upstream genePoln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1
Downstream geneAdra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N22.bB6Ng01-134N22.g
ACCDH935059DH935060
length1,1721,120
definitionDH935059|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N22, 5' end.DH935060|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,597,859 - 35,599,034)(35,461,694 - 35,462,819)
sequence
gaattcctctatgcaaatgaggtatttcccgcacccaaccctgaccaatg
ctatacaaccataccaagagcccccactcacccccccaaaggtttgaaaa
gcctttgtctgccctccctcaactaaactagctgtttcctgaagcctgtc
tccgatcttcctgaagtccgtttctccgttgttctcactccttaggtatc
catcaccctgggttgttctcacctcccttcctctctggatctattggttg
tagtctcaggcaaccatgcccttaagggagggaaagcagagtaggaagga
cacactgcttcttcaatggggtagaccctgctctcagctccgagagtgac
ccgagacaccactgccatcctgagcagccattcctgctagcaggagaagt
tcaggatgttccaagctccaggaagacatggagtctcatccatcctgggt
ctcagaacattgagacagttctccttcagcagagagggacacagctggga
tcctctggtcaatgggaacacaggtctccatcagaggaagtaggaagaca
ggcctgggggcaaggctgagcccaggaggttgccatgcctgaagaagccc
tgtgccagcctccatattttctgctctaagagtgtttacacgatgttttt
gcttgggccagcttggttttgttcctgatgcaatggcagaggctcctgcc
tttcaactagaccagggggaggggggtgtctgtgctgagccaaactcctt
gcaaagtcactgccttggtgtctaggtggcatagttccaatgggccctgt
ctccagtgtggcccccggaggaagtgatgggaccccacatagcacaggcg
caggagccccagccccagtgtttcagggccaagctgttcctgctgcccac
tagtctgtctgagtgtctggcacggttctgccacagcctgagctggctag
aggaacaggctgcattgtcttgccacagcaagctctgtccctcctggata
agtcatatcactcttgcctccaatcctctgtctcacagttttgtcagcat
ccctgctcctgcacctgtaaaacaagctcagaaagcttggcttagcctgt
gtgcggtctcacagagggaactgtgaagctcctctcagattaggcgcgaa
ggcctttgttcccaacccagcc
gaattcaaatgcggttggggagggatgtcttcggttggaactggggttgg
ggctgtgagcagctgctgtaggttctttcttacccaccaccgtgttactg
gtggtctgggtctgagcctctgtttccaggagtttgtgctcttagtcaaa
aaacactgaaacaaaaggtcatacaaactaccaagcagcagggaaacttt
attcacagaaaagcaatatagatcagaaagaaataacaaatgtggctaca
cacacacacacacacacacacacacacacacacacacacaccactccaga
taaaaatcctgaaggaaagctgactgaaatggcaatattcaggattcttg
ggctagaaagctcattccgtggttaagagactgtgccacgcttgcagagg
acagaggtctaatccccagtccccacagacccctggaactccagctcaag
gcaatttgactccctctcaggtcttctcaggcattgtgcatatgtgacac
acacttacacagacacatagacaaaaataatatacagaaaatcatttttt
taaaaaagagggacaaagaccacacagtagacagtacttaggctgctggt
tattgttttggggttttctttcctggggctcaggagaagggggaattaat
tgctgaggggttcagggtgggcagttttctgttttgaccttgctcattgc
tcatgtgtttttccacaattcatctgacttggagcatacacacacaagat
ggtcaacagtggacttttcctaaaagcttacttgacacagtttgtgctgc
atgtatgccccaaacaagctcaggccagactggctcagctgtattcctac
tggataagttagggatgtgtgtaagtagaactgtccaggtttgaaggtta
taaggatcgagagaaaccttttcattgtgtgagagctgtgtgcgtgttac
ttggtgcagaggagccctaagttgtttaggagttgctgtgagatgaggag
ttgtgtgtacattagtacttgaaggtgggagctctagttgctagtgcatc
tccctgtgttggctgcactgcccactgtttcttgagcaaggaattcattt
ctgcaagttcacctatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35597859_35599034
seq2: B6Ng01-134N22.b_50_1221 (reverse)

seq1  GGCT-GGCTGGGAACAAAAGGCCTCCCGCCCTATCTTGTGAGGAAGCCTC  49
      |||| || |||||||||| | | || ||||  ||| || |||| ||| ||
seq2  GGCTGGGTTGGGAACAAAGGCCTTCGCGCCTAATC-TGAGAGG-AGCTTC  48

seq1  A-GGTCCTTTCTGTGTGACCGCACACA-GCTTAGCCAAGCTCTCTGAGCC  97
      |  || |  |||||| ||||||||||| ||| ||||||||| |||||| |
seq2  ACAGTTCCCTCTGTGAGACCGCACACAGGCTAAGCCAAGCTTTCTGAG-C  97

seq1  TTGTTTTTACCAAGTGCA-GAGCAGGGATGCTGACAAAGACTGTGAGACA  146
      |||||||   || ||||| ||||||||||||||||||| |||||||||||
seq2  TTGTTTT--ACAGGTGCAGGAGCAGGGATGCTGACAAA-ACTGTGAGACA  144

seq1  GGAGGATGGAAGGCAAGAGTGATAATGACTTATCCA-GAGGGACAAGAGC  195
       |||||| | ||||||||||||| |||||||||||| ||||||| |||||
seq2  -GAGGATTGGAGGCAAGAGTGAT-ATGACTTATCCAGGAGGGAC-AGAGC  191

seq1  CTGCTGTGGC-AGACAATGCAGCCTGTTCCTCTAGCCAGCTCAGGCTGGT  244
       ||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TTGCTGTGGCAAGACAATGCAGCCTGTTCCTCTAGCCAGCTCAGGCT-GT  240

seq1  GGCAGAACCGTGCCAGACACTCAGACAGACTAGTGGGCAGCAGGAACAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACCGTGCCAGACACTCAGACAGACTAGTGGGCAGCAGGAACAGC  290

seq1  TTGGCCCTGAAACACTGGGGCTGGGGCTCCTGCGCCTGTGCTATGTGGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGAAACACTGGGGCTGGGGCTCCTGCGCCTGTGCTATGTGGGG  340

seq1  TCCCATCACTTCCTCCGGGGGCCACACTGGAGACAGGGCCCATTGGAACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACTTCCTCCGGGGGCCACACTGGAGACAGGGCCCATTGGAACT  390

seq1  ATGCCACCTAGACACCAAGGCAGTGACTTTGCAAGGAGTTTGGCTCAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTAGACACCAAGGCAGTGACTTTGCAAGGAGTTTGGCTCAGCA  440

seq1  CAGACACCCCCCTCCCCCTGGTCTAGTTGAAAGGCAGGAGCCTCTGCCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCCCCCTCCCCCTGGTCTAGTTGAAAGGCAGGAGCCTCTGCCAT  490

seq1  TGCATCAGGAACAAAACCAAGCTGGCCCAAGCAAAAACATCGTGTAAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGGAACAAAACCAAGCTGGCCCAAGCAAAAACATCGTGTAAACA  540

seq1  CTCTTAGAGCAGAAAATATGGAGGCTGGCACAGGGCTTCTTCAGGCATGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAGCAGAAAATATGGAGGCTGGCACAGGGCTTCTTCAGGCATGG  590

seq1  CAACCTCCTGGGCTCAGCCTTGCCCCCAGGCCTGTCTTCCTACTTCCTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCTGGGCTCAGCCTTGCCCCCAGGCCTGTCTTCCTACTTCCTCT  640

seq1  GATGGAGACCTGTGTTCCCATTGACCAGAGGATCCCAGCTGTGTCCCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGACCTGTGTTCCCATTGACCAGAGGATCCCAGCTGTGTCCCTCT  690

seq1  CTGCTGAAGGAGAACTGTCTCAATGTTCTGAGACCCAGGATGGATGAGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAGGAGAACTGTCTCAATGTTCTGAGACCCAGGATGGATGAGAC  740

seq1  TCCATGTCTTCCTGGAGCTTGGAACATCCTGAACTTCTCCTGCTAGCAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCTTCCTGGAGCTTGGAACATCCTGAACTTCTCCTGCTAGCAGG  790

seq1  AATGGCTGCTCAGGATGGCAGTGGTGTCTCGGGTCACTCTCGGAGCTGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGCTCAGGATGGCAGTGGTGTCTCGGGTCACTCTCGGAGCTGAG  840

seq1  AGCAGGGTCTACCCCATTGAAGAAGCAGTGTGTCCTTCCTACTCTGCTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTCTACCCCATTGAAGAAGCAGTGTGTCCTTCCTACTCTGCTTT  890

seq1  CCCTCCCTTAAGGGCATGGTTGCCTGAGACTACAACCAATAGATCCAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTAAGGGCATGGTTGCCTGAGACTACAACCAATAGATCCAGAG  940

seq1  AGGAAGGGAGGTGAGAACAACCCAGGGTGATGGATACCTAAGGAGTGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGGTGAGAACAACCCAGGGTGATGGATACCTAAGGAGTGAGA  990

seq1  ACAACGGAGAAACGGACTTCAGGAAGATCGGAGACAGGCTTCAGGAAACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGGAGAAACGGACTTCAGGAAGATCGGAGACAGGCTTCAGGAAACA  1040

seq1  GCTAGTTTAGTTGAGGGAGGGCAGACAAAGGCTTTTCAAACCTTTGGGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTAGTTGAGGGAGGGCAGACAAAGGCTTTTCAAACCTTTGGGGG  1090

seq1  GGTGAGTGGGGGCTCTTGGTATGGTTGTATAGCATTGGTCAGGGTTGGGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGGGGCTCTTGGTATGGTTGTATAGCATTGGTCAGGGTTGGGT  1140

seq1  GCGGGAAATACCTCATTTGCATAGAGGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  GCGGGAAATACCTCATTTGCATAGAGGAATTC  1172

seq1: chr5_35461694_35462819
seq2: B6Ng01-134N22.g_69_1188

seq1  GAATTCAAATGCGGTTGGGGAGGGATGTCTTCGGTTGGAACTGGGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCGGTTGGGGAGGGATGTCTTCGGTTGGAACTGGGGTTGG  50

seq1  GGCTGTGAGCAGCTGCTGTAGGTTCTTTCTTACCCACCACCGTGTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGCAGCTGCTGTAGGTTCTTTCTTACCCACCACCGTGTTACTG  100

seq1  GTGGTCTGGGTCTGAGCCTCTGTTTCCAGGAGTTTGTGCTCTTAGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGGGTCTGAGCCTCTGTTTCCAGGAGTTTGTGCTCTTAGTCAAA  150

seq1  AAACACTGAAACAAAAGGTCATACAAACTACCAAGCAGCAGGGAAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAAACAAAAGGTCATACAAACTACCAAGCAGCAGGGAAACTTT  200

seq1  ATTCACAGAAAAGCAATATAGATCAGAAAGAAATAACAAATGTGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGAAAAGCAATATAGATCAGAAAGAAATAACAAATGTGGCTACA  250

seq1  CACACACACACACACACACACACACACACACACACACACACCACTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACCACTCCAGA  300

seq1  TAAAAATCCTGAAGGAAAGCTGACTGAAATGGCAATATTCAGGATTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCCTGAAGGAAAGCTGACTGAAATGGCAATATTCAGGATTCTTG  350

seq1  GGCTAGAAAGCTCATTCCGTGGTTAAGAGACTGTGCCACGCTTGCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAAGCTCATTCCGTGGTTAAGAGACTGTGCCACGCTTGCAGAGG  400

seq1  ACAGAGGTCTAATCCCCAGTCCCCACAGACCCCTGGAACTCCAGCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTCTAATCCCCAGTCCCCACAGACCCCTGGAACTCCAGCTCAAG  450

seq1  GCAATTTGACTCCCTCTCAGGTCTTCTCAGGCATTGTGCATATGTGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGACTCCCTCTCAGGTCTTCTCAGGCATTGTGCATATGTGACAC  500

seq1  ACACTTACACAGACACATAGACAAAAATAATATACAGAAAATCATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACACAGACACATAGACAAAAATAATATACAGAAAATCATTTTTT  550

seq1  TAAAAAAGAGGGACAAAGACCACACAGTAGACAGTACTTAGGCTGCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAGGGACAAAGACCACACAGTAGACAGTACTTAGGCTGCTGGT  600

seq1  TATTGTTTTGGGGTTTTCTTTCCTGGGGCTCAGGAGAAGGGGGAATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTGGGGTTTTCTTTCCTGGGGCTCAGGAGAAGGGGGAATTAAT  650

seq1  TGCTGAGGGGTTCAGGGTGGGCAGTTTTCTGTTTTGACCTTGCTCATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGGGTTCAGGGTGGGCAGTTTTCTGTTTTGACCTTGCTCATTGC  700

seq1  TCATGTGTTTTTCCACAATTCATCTGACTTGGAGCATACACACACAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTTTTTCCACAATTCATCTGACTTGGAGCATACACACACAAGAT  750

seq1  GGTCAACAGTGGACTTTTCCTAAAAGCTTACTTGACACAGTTTGTGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACAGTGGACTTTTCCTAAAAGCTTACTTGACACAGTTTGTGCTGC  800

seq1  ATGTATGCCCCAAACAAGCTCAGGCCAGACTGGCTCAGCTGTATTCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCCCCAAACAAGCTCAGGCCAGACTGGCTCAGCTGTATTCCTAC  850

seq1  TGGATAAGTTAGGGATGTGTGTAAGTAGAACTGTCCAGGTTTGAAGGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTTAGGGATGTGTGTAAGTAGAACTGTCCAGGTTTGAAGGTTA  900

seq1  TTAGGATCGAGAGAAACCTTTTCCATTGTGTGGAGAGCTGTGTGCGTGTT  950
      | |||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  TAAGGATCGAGAGAAACCTTTT-CATTGTGT-GAGAGCTGTGTGCGTGTT  948

seq1  ACTTGGTGCAGGAGGGAGCCCTAGGTTGTTTAGGAG-TGCTGTGAGAAGA  999
      |||||||||||   ||||||||| |||||||||||| |||||||||| ||
seq2  ACTTGGTGCAG--AGGAGCCCTAAGTTGTTTAGGAGTTGCTGTGAGATGA  996

seq1  GGAG-TGTGTGTACA-TAGTACTTGTAGGTGGAGGCTCTAGGGTGCCAAG  1047
      |||| |||||||||| ||||||||| ||||||  ||||||  ||  | ||
seq2  GGAGTTGTGTGTACATTAGTACTTGAAGGTGGGAGCTCTA--GTTGCTAG  1044

seq1  TGCATCT-CCTGTGTTGGCTGCACCTGCCCACCTGTTCTCTGAGCAGTGA  1096
      ||||||| ||||||||||||||| ||||||| |||||   ||||||  ||
seq2  TGCATCTCCCTGTGTTGGCTGCA-CTGCCCA-CTGTTTCTTGAGCAAGGA  1092

seq1  TTTCA-TTCTGTCCCAGGCTCACCTATCTGG  1126
       |||| |||||   || | ||||||||||||
seq2  ATTCATTTCTG---CAAGTTCACCTATCTGG  1120