BAC Information

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BAC

Clone NameB6Ng01-135A10
Chromosome5 (Build37)
Map Location 66,833,372 - 66,888,931
singlet/doubletdoublet
Overlap geneApbb2
Upstream gene1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A10.bB6Ng01-135A10.g
ACCDH935178DH935179
length589978
definitionDH935178|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A10, 5' end.DH935179|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,888,337 - 66,888,931)(66,833,372 - 66,834,349)
sequence
tctgggagaaacattagtgctctgtggttgaaattaaacccatttagtgc
tgaggcaggtaatccttcagttattgtgagaatcttggccattctcagtg
acttctggagattttttaaaaagcagaagtcttaccatgtcataacgggc
aatggtgtgttgagaattaatgagtcacggaacatgttatttttgaagag
cgcaagccaccttcttgcgagtttgcaccactgttcctctgacaaaaatg
atgcatcaggcaaagctagttttacaaattttatttccaaattcatcttt
aaggtcagtagccccaaatacttacactggaatactatctggaaatagtt
aactgaggagcagtggcagccaggactgttgacataaagtatttactttg
aagagaattcttagcatttttgccccacatcagcacaacaagaatttgta
gggggtttgggggggggaggaacattaatgtatttgtcaaggattaatga
cctgctggaacatttgtggtggggaatatgttatgggtagtgtcataaat
acagtaattaaaaagctgcacagtaaacactttggactg
gaattcatcgtttttcattcaaaggttctaataggaatgcacaatacata
aattacacggtttgggttctggggtggagctcatggagggctcatgctaa
gcatgcacaaagcccagggttcaactcttagcactgaacaagtgagcaag
cacacagagactgggagtgagaggtaattggtaactacccatacaatagc
ccgcacgatctgggtgtatatgaacggagtcagcctcaaggtacggaatg
tatgagccacccacatcctagctttgcaaaagctagtgtgtaccctcctc
tacccagatccacagatggagaactctgagaagtcctcagaagatgtctt
tggaaatttcaggcttgttttgcttaacaattcgtgtcacacttacgatg
caaccagaaggcctgggtactggggctcagatgcctatgattaaaagagg
atgtcgccatgatgtcactgaatttgcatgcagctgcaagagcaaagatc
aatgttagcctgcttttttctagtataatattctgtgtgtgtgtgtgtgt
gtgtgtatgtgtgttacctgaagcagaggatcccaagcttgacaaatgtt
gtgacaatgcagagagagggtcctaccccaaagacactcttgtctgccat
ttatcctctgggctctgagatttcttaatttacaagaaaagcaagtggcc
cgtgtttttatgtaaaatttctcaatagaacaaacagaacctgtcaatat
tttctcttttaaagatttcttttaatattttatatgtatgattgtttata
tgcatgtctgtttggacactatattcatggaactgagttacagatgggtg
caggttgccacatgggtgccgggaacctagacccaggtactctttcaaga
gagcaagtgttctggtacactgaggaacactccagctcctgattcaggga
ttttctacaacatcatctatggagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66888337_66888931
seq2: B6Ng01-135A10.b_45_639 (reverse)

seq1  CAGTCCAAAGTGTTTACTGTGCAGCTTTTTAATTACTGTATTTATGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAAGTGTTTACTGTGCAGCTTTTTAATTACTGTATTTATGACAC  50

seq1  TACCCATAACATATTCCCCACCACAAATGTTCCAGCAGGTCATTAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAACATATTCCCCACCACAAATGTTCCAGCAGGTCATTAATCCT  100

seq1  TGACAAATACATTAATGTTCCTCCCCCCCCCAAACCCCCTACAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATACATTAATGTTCCTCCCCCCCCCAAACCCCCTACAAATTCTT  150

seq1  GTTGTGCTGATGTGGGGCAAAAATGCTAAGAATTCTCTTCAAAGTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGATGTGGGGCAAAAATGCTAAGAATTCTCTTCAAAGTAAATA  200

seq1  CTTTATGTCAACAGTCCTGGCTGCCACTGCTCCTCAGTTAACTATTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTCAACAGTCCTGGCTGCCACTGCTCCTCAGTTAACTATTTCCA  250

seq1  GATAGTATTCCAGTGTAAGTATTTGGGGCTACTGACCTTAAAGATGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATTCCAGTGTAAGTATTTGGGGCTACTGACCTTAAAGATGAATT  300

seq1  TGGAAATAAAATTTGTAAAACTAGCTTTGCCTGATGCATCATTTTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAAATTTGTAAAACTAGCTTTGCCTGATGCATCATTTTTGTCA  350

seq1  GAGGAACAGTGGTGCAAACTCGCAAGAAGGTGGCTTGCGCTCTTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAGTGGTGCAAACTCGCAAGAAGGTGGCTTGCGCTCTTCAAAAA  400

seq1  TAACATGTTCCGTGACTCATTAATTCTCAACACACCATTGCCCGTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTTCCGTGACTCATTAATTCTCAACACACCATTGCCCGTTATGA  450

seq1  CATGGTAAGACTTCTGCTTTTTAAAAAATCTCCAGAAGTCACTGAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAGACTTCTGCTTTTTAAAAAATCTCCAGAAGTCACTGAGAATG  500

seq1  GCCAAGATTCTCACAATAACTGAAGGATTACCTGCCTCAGCACTAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATTCTCACAATAACTGAAGGATTACCTGCCTCAGCACTAAATGG  550

seq1  GTTTAATTTCAACCACAGAGCACTAATGTTTCTCCCAGAGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTCAACCACAGAGCACTAATGTTTCTCCCAGAGAATTC  595

seq1: chr5_66833372_66834349
seq2: B6Ng01-135A10.g_69_1046

seq1  GAATTCATCGTTTTTCATTCAAAGGTTCTAATAGGAATGCACAATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGTTTTTCATTCAAAGGTTCTAATAGGAATGCACAATACATA  50

seq1  AATTACACGGTTTGGGTTCTGGGGTGGAGCTCATGGAGGGCTCATGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACGGTTTGGGTTCTGGGGTGGAGCTCATGGAGGGCTCATGCTAA  100

seq1  GCATGCACAAAGCCCAGGGTTCAACTCTTAGCACTGAACAAGTGAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACAAAGCCCAGGGTTCAACTCTTAGCACTGAACAAGTGAGCAAG  150

seq1  CACACAGAGACTGGGAGTGAGAGGTAATTGGTAACTACCCATACAATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGACTGGGAGTGAGAGGTAATTGGTAACTACCCATACAATAGC  200

seq1  CCGCACGATCTGGGTGTATATGAACGGAGTCAGCCTCAAGGTACGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACGATCTGGGTGTATATGAACGGAGTCAGCCTCAAGGTACGGAATG  250

seq1  TATGAGCCACCCACATCCTAGCTTTGCAAAAGCTAGTGTGTACCCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCCACCCACATCCTAGCTTTGCAAAAGCTAGTGTGTACCCTCCTC  300

seq1  TACCCAGATCCACAGATGGAGAACTCTGAGAAGTCCTCAGAAGATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGATCCACAGATGGAGAACTCTGAGAAGTCCTCAGAAGATGTCTT  350

seq1  TGGAAATTTCAGGCTTGTTTTGCTTAACAATTCGTGTCACACTTACGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTCAGGCTTGTTTTGCTTAACAATTCGTGTCACACTTACGATG  400

seq1  CAACCAGAAGGCCTGGGTACTGGGGCTCAGATGCCTATGATTAAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAAGGCCTGGGTACTGGGGCTCAGATGCCTATGATTAAAAGAGG  450

seq1  ATGTCGCCATGATGTCACTGAATTTGCATGCAGCTGCAAGAGCAAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGCCATGATGTCACTGAATTTGCATGCAGCTGCAAGAGCAAAGATC  500

seq1  AATGTTAGCCTGCTTTTTTCTAGTATAATATTCTGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGCCTGCTTTTTTCTAGTATAATATTCTGTGTGTGTGTGTGTGT  550

seq1  GTGTGTATGTGTGTTACCTGAAGCAGAGGATCCCAAGCTTGACAAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTTACCTGAAGCAGAGGATCCCAAGCTTGACAAATGTT  600

seq1  GTGACAATGCAGAGAGAGGGTCCTACCCCAAAGACACTCTTGTCTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATGCAGAGAGAGGGTCCTACCCCAAAGACACTCTTGTCTGCCAT  650

seq1  TTATCCTCTGGGCTCTGAGATTTCTTAATTTACAAGAAAAGCAAGTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCTGGGCTCTGAGATTTCTTAATTTACAAGAAAAGCAAGTGGCC  700

seq1  CGTGTTTTTATGTAAAATTTCTCAATAGAACAAACAGAACCTGTCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTTATGTAAAATTTCTCAATAGAACAAACAGAACCTGTCAATAT  750

seq1  TTTCTCTTTTAAAGATTTCTTTTAATATTTTATATGTATGATTGTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTAAAGATTTCTTTTAATATTTTATATGTATGATTGTTTATA  800

seq1  TGCATGTCTGTTTGGACACTATATTCATGGAACTGAGTTACAGATGGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCTGTTTGGACACTATATTCATGGAACTGAGTTACAGATGGGTG  850

seq1  CAGGTTGCCACATGGGTGCCGGG-ACCTAGACCCAGGTACTC-TTCAAGA  898
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CAGGTTGCCACATGGGTGCCGGGAACCTAGACCCAGGTACTCTTTCAAGA  900

seq1  GCAGCAAGTGTTCTGTACCACTGAGGCAACACTCCAGCTCCTGACTCA-G  947
      | |||||||||||||   |||||||| ||||||||||||||||| ||| |
seq2  G-AGCAAGTGTTCTGGTACACTGAGG-AACACTCCAGCTCCTGATTCAGG  948

seq1  GAATTTCTACAACACCATCTATGGAGCATTA  978
      || ||||||||||| ||||||||||| ||||
seq2  GATTTTCTACAACATCATCTATGGAG-ATTA  978