BAC Information

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BAC

Clone NameB6Ng01-135F01
Chromosome5 (Build37)
Map Location 71,188,181 - 71,189,420
singlet/doubletsinglet
Overlap geneGabrg1
Upstream genenone
Downstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135F01.bB6Ng01-135F01.g
ACCDH935386DH935387
length1,2191,198
definitionDH935386|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F01, 5' end.DH935387|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcattccatctctatgtacgtttacagaagtatatttagtaca
aatgtgagcccaaaatatacatgccaaaatggaaggtataaggtccatga
ggctataatcctatgcagagaactccaggcaactgagggaagcttggagc
aagaacatgatcattcacaggaaaagcactcaaagtggctgtctagtgcc
aaacgctcatccctgaaaacatacatgcaagcaatattatcctgaattaa
tctgaatcattttcggcaattttcacatccatatttcctcatcttgtgta
gagctacaatttaaaagaccttaattaatcatcagccagctaatgttacc
aagtggtattttaaaaaggacccatagctagaaaatatgcatctcatcat
tgttaatggaatacatttcaccactgaaaacaagcaggaaactgtgaata
ttgtccatattctataaacaaacatggagactgttttctcattttagtaa
tgttttcatcttggtatcttttccctttttatggtcttatgaggacacaa
ttctgaaaaaatatattgcacatttcttatacaaacttagtttccttata
caataaaccagtggattaactattaataaaatattaaagtaaggcatgga
atatatacaccaacagcaaatattttgtgttgcactgatgatgatccttc
cactgtgggaacttcagtggccttgcgttttgatgttggtcagcaattgt
cccagtaactgaatcccatgtagcctgtgcactaacaccagagttaatat
ttgactaacatatccagtttcatcttataattagttcagaaatgttgata
ttatgtgagtcagggtaactgattaatatgtagaagtttctacattttag
tatgaaaacatgtcttgcaaaataaataccctgtagtcatttgtttttaa
tgtaggcagtagtgttatgcagtaaatgaagaaaccaaatattttgttga
tttatcagtataaatgaaaagtatgatttatagaaggtgtgtttttagat
cagtgtaatgcctagaaatgcaataaattaacttacaattcactggaaga
ctcttaatttgtattggcttcataaaaataactttaaatcctagcgaaat
agctatatctattattggcaccagtaatagttagcagaatatgacattat
aagggactaagatgtcttc
gaattctcacccaaggattactgaatggctgagaaacacctgaaaaaatg
ttcaacatcctaatcatcagagaaatgcaaatcaaaacatccctgagatt
ccatcacacaccagtcagaatggctaagatcaaaaattcaggtaacagca
gatgctggcgaggatggggagaaagaggaacactcttccatttttggtgg
agttgcaagcttgtacaaccactctggaaatcagtctggcagttcttcag
aaaattggacatagtactaccagaggatcccgcaatacctctcctgggca
tatatccagaagatatcccaaccggtaagaaggacacatgttccactatg
ttcttggcagccttatttataatagccagaagctcgaaagaacccagatg
cccctcaaaagaggaatggataaaagaaatgtggtacatttacacaatgg
agtacctctcagctattaaaaagaatgaatttgtgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccagaaact
tagtatagcgagatataaggtataatttgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtggacactttgcccctttcttagaattggaaa
taattacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagaaactgccatatccagggatccatccctataatt
agcctccaaacgatgacaccattgcatacactagcaagcgtttgctgcaa
ggaccgttatataggctgtctcttgtgagactaggccagggcctagcaaa
cacagaagtggatgctcactggtcaactattcgatggatcacagggccct
caattggaggaactaggagaagtatccaagaagctaaagaaatctgcaac
ccttgtagtgcaacattgtttactaaccagtaccctgagctccttgactc
tagctggatatgtttcaaaagatggctagtaggccatcacctggtaaaga
gaggccattgacaggtcaacttttaatgcccggtacagggtactcagagg
ccaaaaatggtgatggtgacggcgtatgagaacatactcggcgtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71188181_71189420
seq2: B6Ng01-135F01.b_46_1264 (reverse)

seq1  GAAGACATCTTAGTGCCTTTAATTGTCATTTATTTCTGCTAACTATTTAC  50
      |||||||||||||| ||||  | ||||||    |||||||||||| ||||
seq2  GAAGACATCTTAGTCCCTTATAATGTCAT---ATTCTGCTAACTA-TTAC  46

seq1  TGGTGGCAATAAATAGATAATTAAGCTAATTACAGCTAGGATTTAAAGGA  100
      ||||| |||| ||||||||    ||||| ||   ||||||||||||||  
seq2  TGGTGCCAAT-AATAGATA---TAGCTATTT--CGCTAGGATTTAAAG--  88

seq1  TAATTTTTATGAAGCCAATTAACAATATAAGAGGTTCCTCAGTTGAATTT  150
      | |||||||||||||||||  ||||  ||||||  || ||   |||| ||
seq2  TTATTTTTATGAAGCCAAT--ACAAATTAAGAG--TCTTCCAGTGAA-TT  133

seq1  GTAAGTATATTTATTGCATTTTCTAAGCAATTACAACTGATCTAAACACA  200
      ||||||  |||||||||| |||||| || ||||| ||||||||||| |||
seq2  GTAAGTTAATTTATTGCA-TTTCTAGGC-ATTAC-ACTGATCTAAAAACA  180

seq1  CAACCCTTCTAT-AATCATACTTTTCATTTATACTGATAAATCAAC-AAA  248
      ||  |||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CA--CCTTCTATAAATCATACTTTTCATTTATACTGATAAATCAACAAAA  228

seq1  TATTTGGTTTCTTCATTTACTGCATAACACTTACTGCCTACAGTAAAAAC  298
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TATTTGGTTTCTTCATTTACTGCATAACAC-TACTGCCTACATTAAAAAC  277

seq1  AAATGACTACAGGGTATTTATTTTGCAAGACATGTTTTTCATACTAAAAT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAATGACTACAGGGTATTTATTTTGCAAGACATG-TTTTCATACTAAAAT  326

seq1  GTAGAAACTTCTACATATTAATCAGTTACCCTGACTC-CATAATATCAAC  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAGAAACTTCTACATATTAATCAGTTACCCTGACTCACATAATATCAAC  376

seq1  ATTTCTGAACTAATTATAAGATGAAACTGGATATGTTAGTCAAATATTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAACTAATTATAAGATGAAACTGGATATGTTAGTCAAATATTAA  426

seq1  CTCTGGTGTTAGTGCACAGGCTACATGGGATTCAGTTACTGGGACAATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGTTAGTGCACAGGCTACATGGGATTCAGTTACTGGGACAATTG  476

seq1  CTGACCAACATCAAAACGCAAGGCCACTGAAGTTCCCACAGTGGAAGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAACATCAAAACGCAAGGCCACTGAAGTTCCCACAGTGGAAGGAT  526

seq1  CATCATCAGTGCAACACAAAATATTTGCTGTTGGTGTATATATTCCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAGTGCAACACAAAATATTTGCTGTTGGTGTATATATTCCATGC  576

seq1  CTTACTTTAATATTTTATTAATAGTTAATCCACTGGTTTATTGTATAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTAATATTTTATTAATAGTTAATCCACTGGTTTATTGTATAAGG  626

seq1  AAACTAAGTTTGTATAAGAAATGTGCAATATATTTTTTCAGAATTGTGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGTTTGTATAAGAAATGTGCAATATATTTTTTCAGAATTGTGTC  676

seq1  CTCATAAGACCATAAAAAGGGAAAAGATACCAAGATGAAAACATTACTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGACCATAAAAAGGGAAAAGATACCAAGATGAAAACATTACTAA  726

seq1  AATGAGAAAACAGTCTCCATGTTTGTTTATAGAATATGGACAATATTCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAACAGTCTCCATGTTTGTTTATAGAATATGGACAATATTCAC  776

seq1  AGTTTCCTGCTTGTTTTCAGTGGTGAAATGTATTCCATTAACAATGATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTGCTTGTTTTCAGTGGTGAAATGTATTCCATTAACAATGATGA  826

seq1  GATGCATATTTTCTAGCTATGGGTCCTTTTTAAAATACCACTTGGTAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATATTTTCTAGCTATGGGTCCTTTTTAAAATACCACTTGGTAACA  876

seq1  TTAGCTGGCTGATGATTAATTAAGGTCTTTTAAATTGTAGCTCTACACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGCTGATGATTAATTAAGGTCTTTTAAATTGTAGCTCTACACAA  926

seq1  GATGAGGAAATATGGATGTGAAAATTGCCGAAAATGATTCAGATTAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAAATATGGATGTGAAAATTGCCGAAAATGATTCAGATTAATTC  976

seq1  AGGATAATATTGCTTGCATGTATGTTTTCAGGGATGAGCGTTTGGCACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATATTGCTTGCATGTATGTTTTCAGGGATGAGCGTTTGGCACTA  1026

seq1  GACAGCCACTTTGAGTGCTTTTCCTGTGAATGATCATGTTCTTGCTCCAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCACTTTGAGTGCTTTTCCTGTGAATGATCATGTTCTTGCTCCAA  1076

seq1  GCTTCCCTCAGTTGCCTGGAGTTCTCTGCATAGGATTATAGCCTCATGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTCAGTTGCCTGGAGTTCTCTGCATAGGATTATAGCCTCATGGA  1126

seq1  CCTTATACCTTCCATTTTGGCATGTATATTTTGGGCTCACATTTGTACTA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATACCTTCCATTTTGGCATGTATATTTTGGGCTCACATTTGTACTA  1176

seq1  AATATACTTCTGTAAACGTACATAGAGATGGAATGAAGAATTC  1240
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTCTGTAAACGTACATAGAGATGGAATGAAGAATTC  1219