BAC Information

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BAC

Clone NameB6Ng01-139C12
Chromosome5 (Build37)7 (Build37)
Map Location 50,973,889 - 50,974,55112,042,725 - 12,043,754
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C12.bB6Ng01-139C12.g
ACCDH938214DH938215
length6731,030
definitionDH938214|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C12, 5' end.DH938215|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,973,889 - 50,974,551)(12,042,725 - 12,043,754)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgcg
gcggtgatggtaaccgtcccaggttttcttgtcccgggttttctcgtccc
aggtcttctcgtcccaggtcttctcgtcccaggtcttctcgtcccgggtt
ttctcgtcccaggtcttctcgtcccgtcccgggttttctcgtcccgtccc
gggtttcggcaccaactcttgcacgcgctctcgtgaccggccaggaaaga
cgcagcaaaccggaatcttctgcggaatctttattgcttacatcttcagg
agcaagagagcaagagagccagagagcaagagagagaaaaagaacaagaa
agcaagagagagaaaaagcaagaacaagagagagagaaagcaagaacaag
agagagaaaaaacatggcaaaaccccgtcccttttaaggagaattatcct
ccacctaggacgtattactccctgattggctgcagcccatcggcccagtt
gtcatcacgggaaaggcagaacacatggcgggaaacctgcccctgcacgt
gtgcagattatgtttaccacttagaacacagctgtcagcgccatcttata
atggcaaatgtgagggcagctcc
gaattctatacttaacagatcctgtctgatatgaattgatgaaagtcctt
agcctggagcttcatttcagtcttcaatctcttaaatacctaccagaggc
ctgactttctggcctgaggaagctgtaggagggctaactagcagagtggc
aatgctggacagtgagggctatgtgagtccttcattagaagcagaaatgg
caacaaacaggacccagttattaaaccaaatcctagatgattgttgccca
ttgtcacagaagttatctttggactctagattatttctaggaaagagtca
tctgggttcctttagatcgacttagaggacacaattccaaaatgttagtt
atagaaaaggaggcaggttggcacatattagggagtaggcatctactttc
ttaggcatggcctccagtgcataaagaaccctctcaggtacaaagtgaag
ggggaaagtaagaaataaagggaaaggacatgactgcttgtaggtatggt
agaagagaaagtttaccatagataagtgggagagcacagctagagacaga
aacacctgggagagtccagagtggacatgaccctgagccatgtgagaaga
ggagcagcagaagagagatcgaggagggggaggggaaaggtgcagcagcc
aagaggcccaaaagagcagggctaaccaaacttgttagattgtaaaggga
aggacagctcggggcaaagcaacccaactccagagctgggggagtttaag
gtagcgggggctaagtatgccagccaagaactcttggtgtaaggttgcta
aacaccccagccgcaggtctgctttgttctctttagtagacattttaagc
tttttggtcccagctttaaaacctaggactaaaacaagaaatgagcaggg
catggtggcacatgctttaattcccagcactccagaggtagatgcaggtt
gatttctgagttcgagtcagcctgttctacagagtgagttctaggacatc
cagggctacagagaaactctgtcccgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50973889_50974551
seq2: B6Ng01-139C12.b_49_721

seq1  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTT  50

seq1  CATTACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCG  100

seq1  CCGGTGATGGTAACCGTCCCAGGTTTTCTCGTCTCGGGAT----------  140
       |||||||||||||||||||||||||||| ||| |||| |          
seq2  GCGGTGATGGTAACCGTCCCAGGTTTTCTTGTCCCGGGTTTTCTCGTCCC  150

seq1  --------------------TTCTCGTCCCAGGTCTTCTCGTCCTGGGTT  170
                          |||||||||||||||||||||||| |||||
seq2  AGGTCTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCGGGTT  200

seq1  TTCTCGTCCCGGGT-TTCTCGTCAC--------------CAACTCTTCCC  205
      |||||||||| ||| |||||||| |              |  | | ||||
seq2  TTCTCGTCCCAGGTCTTCTCGTCCCGTCCCGGGTTTTCTCGTCCCGTCCC  250

seq1  GGGTTTCGGCACCAACTCTTACACGCGTTCACGCGACCGGCCAGGAAAGA  255
      |||||||||||||||||||| |||||| || || ||||||||||||||| 
seq2  GGGTTTCGGCACCAACTCTTGCACGCGCTCTCGTGACCGGCCAGGAAAG-  299

seq1  ACGCAACAAACCGGAATCTTCTGCGGCACAACTTTATTGCTTACATCTTC  305
      ||||| ||||||||||||||||||||   | |||||||||||||||||||
seq2  ACGCAGCAAACCGGAATCTTCTGCGG--AATCTTTATTGCTTACATCTTC  347

seq1  AGGAGCCAGAGAGCAAGAGAGCAAGAGAGCAAGAGCAAGAAAGCAAGAAA  355
      |||||| ||||||||||||||| ||||||||||||              |
seq2  AGGAGCAAGAGAGCAAGAGAGCCAGAGAGCAAGAG--------------A  383

seq1  AAGAACAAGAACAAGAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGA  405
       |||| |||||||||||||||||| | ||||          |||||||| 
seq2  GAGAAAAAGAACAAGAAAGCAAGAGAGAGAA----------AAAGCAAG-  422

seq1  GAGAGAAAGCAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAAAAAGAAT  455
             | ||||||||||| |||||||||||||||||||||||||  ||
seq2  -------AACAAGAGAGAGAGAAAGCAAGAACAAGAGAGAGAAAAAACAT  465

seq1  GGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTAT  505
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCACCTAGGACGTAT  515

seq1  TACTCCCTGATTGGCTGCAGCCCATCGGCTCAGTTGTCATCACGAGAAAG  555
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGGGAAAG  565

seq1  GCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTT  605
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGAACACATGGCGGGAAACCTGCCCCTGCACGTGTGCAGATTATGTTT  615

seq1  ACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGG  655
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGG  665

seq1  GCGGCTCC  663
      || |||||
seq2  GCAGCTCC  673

seq1: chr7_12042725_12043754
seq2: B6Ng01-139C12.g_70_1099

seq1  GAATTCTATACTTAACAGATCCTGTCTGATATGAATTGATGAAAGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACTTAACAGATCCTGTCTGATATGAATTGATGAAAGTCCTT  50

seq1  AGCCTGGAGCTTCATTTCAGTCTTCAATCTCTTAAATACCTACCAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAGCTTCATTTCAGTCTTCAATCTCTTAAATACCTACCAGAGGC  100

seq1  CTGACTTTCTGGCCTGAGGAAGCTGTAGGAGGGCTAACTAGCAGAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCTGGCCTGAGGAAGCTGTAGGAGGGCTAACTAGCAGAGTGGC  150

seq1  AATGCTGGACAGTGAGGGCTATGTGAGTCCTTCATTAGAAGCAGAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGACAGTGAGGGCTATGTGAGTCCTTCATTAGAAGCAGAAATGG  200

seq1  CAACAAACAGGACCCAGTTATTAAACCAAATCCTAGATGATTGTTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAGGACCCAGTTATTAAACCAAATCCTAGATGATTGTTGCCCA  250

seq1  TTGTCACAGAAGTTATCTTTGGACTCTAGATTATTTCTAGGAAAGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGAAGTTATCTTTGGACTCTAGATTATTTCTAGGAAAGAGTCA  300

seq1  TCTGGGTTCCTTTAGATCGACTTAGAGGACACAATTCCAAAATGTTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTCCTTTAGATCGACTTAGAGGACACAATTCCAAAATGTTAGTT  350

seq1  ATAGAAAAGGAGGCAGGTTGGCACATATTAGGGAGTAGGCATCTACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGGAGGCAGGTTGGCACATATTAGGGAGTAGGCATCTACTTTC  400

seq1  TTAGGCATGGCCTCCAGTGCATAAAGAACCCTCTCAGGTACAAAGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATGGCCTCCAGTGCATAAAGAACCCTCTCAGGTACAAAGTGAAG  450

seq1  GGGGAAAGTAAGAAATAAAGGGAAAGGACATGACTGCTTGTAGGTATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGTAAGAAATAAAGGGAAAGGACATGACTGCTTGTAGGTATGGT  500

seq1  AGAAGAGAAAGTTTACCATAGATAAGTGGGAGAGCACAGCTAGAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAAGTTTACCATAGATAAGTGGGAGAGCACAGCTAGAGACAGA  550

seq1  AACACCTGGGAGAGTCCAGAGTGGACATGACCCTGAGCCATGTGAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGGGAGAGTCCAGAGTGGACATGACCCTGAGCCATGTGAGAAGA  600

seq1  GGAGCAGCAGAAGAGAGATCGAGGAGGGGGAGGGGAAAGGTGCAGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCAGAAGAGAGATCGAGGAGGGGGAGGGGAAAGGTGCAGCAGCC  650

seq1  AAGAGGCCCAAAAGAGCAGGGCTAACCAAACTTGTTAGATTGTAAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCCAAAAGAGCAGGGCTAACCAAACTTGTTAGATTGTAAAGGGA  700

seq1  AGGACAGCTCGGGGCAAAGCAACCCAACTCCAGAGCTGGGGGAGTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCTCGGGGCAAAGCAACCCAACTCCAGAGCTGGGGGAGTTTAAG  750

seq1  GTAGCGGGGGCTAAGTATGCCAGCCAAGAACTCTTGGTGTAAGGTTGCTT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTAGCGGGGGCTAAGTATGCCAGCCAAGAACTCTTGGTGTAAGGTTGC-T  799

seq1  AAACACCCCAGCCGCAGGTCTGCTTTGTTCTCTTTAGTAGACA-TTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAACACCCCAGCCGCAGGTCTGCTTTGTTCTCTTTAGTAGACATTTTAAG  849

seq1  CTTTTT-GTCCCAGCTTTAAAACCTAAGACTAAAACAAGAAATGAGCAGG  898
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTTGGTCCCAGCTTTAAAACCTAGGACTAAAACAAGAAATGAGCAGG  899

seq1  GCATGGTGGCACATGCCTTTAATCCCAGCACTCCAGAGGCAGATGCAGGT  948
      |||||||||||||||| || | ||||||||||||||||| ||||||||||
seq2  GCATGGTGGCACATGCTTTAATTCCCAGCACTCCAGAGGTAGATGCAGGT  949

seq1  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACA  998
       ||||||||||||||| | ||||||| |||||||||||||||||||||||
seq2  TGATTTCTGAGTTCGA-GTCAGCCTGTTCTACAGAGTGAGTTCTAGGACA  998

seq1  GCCAGGGCTACAGAGAAACCCTGTCTCGAAAA  1030
       |||||||||||||||||| ||||| ||||||
seq2  TCCAGGGCTACAGAGAAACTCTGTCCCGAAAA  1030