BAC Information

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BAC

Clone NameB6Ng01-139N02
Chromosome5 (Build37)8 (Build37)
Map Location 18,084,511 - 18,084,5637,089,723 - 7,090,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139N02.bB6Ng01-139N02.g
ACCDH938704DH938705
length1,0041,095
definitionDH938704|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N02, 5' end.DH938705|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,563)(7,089,723 - 7,090,836)
sequence
gaattctcaactgaggaatataaaatggctgagaagcacttaagaacttt
tcaacatccttagtcatcagggaaatgcaaatcaaagcaaccctcagatt
ccacctcacagcagtcagaattgctaagatcaaaatcaggtgacagcaga
tgctggtgaggatgtggagaaagagggacacgtctccattgttggtgaga
ttgcaagctgatacaaccaatctggaaatcagtttggttgttcttcagaa
aatcgacacagcactacctgaggactcagctataacactgttgggcatat
acccagaagatgctccaacatgtagtaaggacacatgctccactatgttc
atagcagccttttttataatagccagaagctagaatgaacccatatatcc
ctcaacagaggaatgaatacagtcaatgtggtacatctacacaatggagt
actactaaaatggagtagtactaaaaaacagtttatttatgaaattctta
ggcaaatgggtggaactagaaaatatcatcctgtgtgaggtaacccaatc
acaaaggaacacacatggtatgtactcactgataaatggatattatccca
gaagctcggaatacccaagatacaattcacagaagctcaaaaaaaaaaaa
aaaagtaagaccaaagtatggatgctttggactatcttagaatggggaac
aaaatacgcatgggagaagttacagagacaaagtatggagcagagtgtga
aggaatgaccatctagagacttccccacctggggatccatcccaaacaca
atcaacaaacctaggcactggtgtggatgccaacaagtgcttgctgacag
gagcatggtatagctgtctcttgagaggctctccaatgcctaacaaatac
agaggtggatgctctcagccaaccattggactgagcacagtcctcaatga
atgagctaatgaaaggctgagagctgacgagctgtagcccataggagaca
cata
gaattcagaagggaatttgtgaaaggtattatattattgcatggaataaa
tgttatcattattgctattatttatatcttcattttaggagtcaacaatt
accaatataaaacagtatgggttattttataaaaaccagaggacaaggga
taaaaacaaaacccttagaggtagttaatatattctaagaggatttgtag
ttattgagaatatacaaccacattatgtagagttaacacagaaattaggt
ggtaaataaaggaataaatgtagagtacttttcttggaactcaagaaaaa
agaggtctggacagtttgttgagttgaaaatgatgttaatatcctccaaa
gacctgtggaagtgaatgtgtgtgaagggatagaggtctgagctggtggc
atatggaagatgagatgattactggagctgtgagagtctatgatgcctgt
tactgaaatgcacagtgaaccactcccctggaagcagaatttataatcct
gaggccagctgtaagactaaaggttaaaggcttctccagacacataaaga
ttacattataaattcatatattttcaggttagattctagtttgcagttga
ataccctaacaatttaaaatctctaaacataaacacaagaagaaaggcag
caagatataatgtgttttagtccaacagaaagcacccatcgtgatggtat
tgaatgctaagaacaagtcaaactaatatagaagtgatcaatagatatgc
ttatgaattttctttattaaaaccatataatgtcctgggtccaaacttcc
aaattttggggtacttttgtgtgtgcatgcacactcagacatggggggac
actgagacaaccagacagaaagaaactctagagagagagagagagggaga
tagacacagagatgaagagacagagatagataggcaggcagaggcagaca
acacactacaggtacagacgagaaggaggaacagagacgaaacgagaatg
ttcagagggtcaagactgcatacatatctgaactcttgagaagaagatag
agcagactgatagacctcagcctacagctagcttgcaattgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084563
seq2: B6Ng01-139N02.b_372_424 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAAAAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTT  53
      |||
seq2  CTT  53

seq1: chr8_7089723_7090836
seq2: B6Ng01-139N02.g_67_1161

seq1  GAATTCAGAAGGGAATTTGTGAAAGGTATTATATTATTGCATGGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGGAATTTGTGAAAGGTATTATATTATTGCATGGAATAAA  50

seq1  TGTTATCATTATTGCTATTATTTATATCTTCATTTTAGGAGTCAACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATTATTGCTATTATTTATATCTTCATTTTAGGAGTCAACAATT  100

seq1  ACCAATATAAAACAGTATGGGTTATTTTATAAAAACCAGAGGACAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATAAAACAGTATGGGTTATTTTATAAAAACCAGAGGACAAGGGA  150

seq1  TAAAAACAAAACCCTTAGAGGTAGTTAATATATTCTAAGAGGATTTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACCCTTAGAGGTAGTTAATATATTCTAAGAGGATTTGTAG  200

seq1  TTATTGAGAATATACAACCACATTATGTAGAGTTAACACAGAAATTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGAATATACAACCACATTATGTAGAGTTAACACAGAAATTAGGT  250

seq1  GGTAAATAAAGGAATAAATGTAGAGTACTTTTCTTGGAACTCAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAAGGAATAAATGTAGAGTACTTTTCTTGGAACTCAAGAAAAA  300

seq1  AGAGGTCTGGACAGTTTGTTGAGTTGAAAATGATGTTAATATCCTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGGACAGTTTGTTGAGTTGAAAATGATGTTAATATCCTCCAAA  350

seq1  GACCTGTGGAAGTGAATGTGTGTGAAGGGATAGAGGTCTGAGCTGGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGGAAGTGAATGTGTGTGAAGGGATAGAGGTCTGAGCTGGTGGC  400

seq1  ATATGGAAGATGAGATGATTACTGGAGCTGTGAGAGTCTATGATGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAGATGAGATGATTACTGGAGCTGTGAGAGTCTATGATGCCTGT  450

seq1  TACTGAAATGCACAGTGAACCACTCCCCTGGAAGCAGAATTTATAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATGCACAGTGAACCACTCCCCTGGAAGCAGAATTTATAATCCT  500

seq1  GAGGCCAGCTGTAAGACTAAAGGTTAAAGGCTTCTCCAGACACATAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCTGTAAGACTAAAGGTTAAAGGCTTCTCCAGACACATAAAGA  550

seq1  TTACATTATAAATTCATATATTTTCAGGTTAGATTCTAGTTTGCAGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATAAATTCATATATTTTCAGGTTAGATTCTAGTTTGCAGTTGA  600

seq1  ATACCCTAACAATTTAAAATCTCTAAACATAAACACAAGAAGAAAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTAACAATTTAAAATCTCTAAACATAAACACAAGAAGAAAGGCAG  650

seq1  CAAGATATAATGTGTTTTAGTCCAACAGAAAGCACCCATCGTGATGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATAATGTGTTTTAGTCCAACAGAAAGCACCCATCGTGATGGTAT  700

seq1  TGAATGCTAAGAACAAGTCAAACTAATATAGAAGTGATCAATAGATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTAAGAACAAGTCAAACTAATATAGAAGTGATCAATAGATATGC  750

seq1  TTATGAATTTTCTTTATTAAAACCATATAATGTCCTGGGTCCAAACTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATTTTCTTTATTAAAACCATATAATGTCCTGGGTCCAAACTTCC  800

seq1  AAATTTTGGGGTACTTTTGTGTGTGCATGCACACTCAGACATGGGGGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGGGTACTTTTGTGTGTGCATGCACACTCAGACATGGGGGGAC  850

seq1  ACTGAGACAACCAGACAGAAAGAAACTCTAAGAGAGAGAGAGAGAGGGAG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTGAGACAACCAGACAGAAAGAAACTCT-AGAGAGAGAGAGAGAGGGAG  899

seq1  ATAGACACAGAGATGAAGAGACAGAGATAGATAGGCAGGCAGAGGCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACAGAGATGAAGAGACAGAGATAGATAGGCAGGCAGAGGCAGAC  949

seq1  AAACACACTACAGGTACAGACGAAGAAGGAGGAAACAGAGACAGAGACAG  1000
       ||||||||||||||||||||| ||||||||| ||||||||| || || |
seq2  -AACACACTACAGGTACAGACG-AGAAGGAGG-AACAGAGAC-GAAAC-G  994

seq1  AGAAATGTTCAGGAAGGGTCAAGACTGCATACATATCTGACATCTTGAAG  1050
      || |||||||||  ||||||||||||||||||||||||||  ||||||  
seq2  AG-AATGTTCAG--AGGGTCAAGACTGCATACATATCTGAACTCTTGA--  1039

seq1  GAAGAAGGATAGGAAGCAAGACTGATTAGACCCTCAGCCTACAGCTTAGC  1100
      |||||| |||||  ||| ||||||| |||| |||||||||||||| ||||
seq2  GAAGAA-GATAG--AGC-AGACTGA-TAGA-CCTCAGCCTACAGC-TAGC  1082

seq1  TTGCAAATTGGGTA  1114
      |||| |||||||||
seq2  TTGC-AATTGGGTA  1095