BAC Information

Click to search

BAC

Clone NameB6Ng01-139O20
Chromosome4 (Build37)5 (Build37)
Map Location 67,823,033 - 67,824,14751,609,631 - 51,610,141
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139O20.bB6Ng01-139O20.g
ACCDH938788DH938789
length1,1001,044
definitionDH938788|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O20, 5' end.DH938789|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,823,033 - 67,824,147)(51,609,631 - 51,610,141)
sequence
gaattcattcattagtccccacgatagtatcctttagtggcacagtattc
tctgtaaggatttgttcaagaggagcctttggagacaatttgttaccatt
actgctttcaactttatctgtagcctacctcctgggtctgtctaaaggac
ttatttttttgcaaacatcacagattgttcctatgttctactataagaga
ggccactcccctgtctcctaaatctgagatggggctgtgtgattactctc
aagttgagagcagaaagtcaaacagaagatacctgaattagagtcttgta
cctaaagtcagcataaaaattgtgggttgcttcccttaggcttttccttc
tttgagttcagctaattaacaatatgaacctaagttgacagcattgctaa
gaaacaatactgctgtgggaggccgagaaagtactctgactgttaaattt
cttcctgttttataaatacatgcttattatagaggcaccctttgttgtct
cctacatttgggtctgacagctctcatcttcacctattgtttgtacaggt
ttcaaacatataatcaaacttgacatacaggccttgttttgttttcaaac
attaaaataaatatgttatattaacaaggccatttaaaatgaatttgtta
cttagcctcacaagcacatttaactgaaggagttccactgacaattactt
atcatgtttttacctgtttgattgttcttaaccatggacaacatggtgac
ttaacagtagtgggcaattaagatcctttactttagcactgttttaaaag
actctaacagtgaaaagcgcagctgttactttaggaaacacattcattgt
ttacatttgtccaacagtcacttgttttaaaagatatttagcactatgca
ctgggccaagaaaagggcagttgtcatttttgtcaaagcttaaaattttg
aggaagtcaatataagttatatatctttaaaatgaatgaagaagtgtgaa
tagctatgtgatgcaagagaaaatcatgacagaaaatggtcagtttccac
aaagcagcaagagcagcaacctgtttttgttgttgatgttgtgtttgttt

gaattcagttagtgagaattttattgaggatttttgcatcgatattcatc
aaggaaattggtctgaagttctttatctttgctgcatcttttgtggttta
ggtatcagagtaattgtggcttcaaagaatgaattgggtagagtaccttc
tgcttttattttgtggaatagtttgtgaagaactgtaattagatcttctt
taaaggtctgatagaactctgcactaaacacatctggtcctgggcttttg
ttttggttgagagactattaatggctgcttctatttctttagggtatata
ggactgtttagatcattaacctgatcctgaattaacttttgtacctggta
cctgtctagaaatttgtccatttcatccaggttttccagttttgttgagt
atagccttttgtagaaggatctgatggtgttttggatttcttcaggatct
gttgttatgtctcccttttcatttctgattttgttaattagaatggtgtc
cctgtgccctctagtgagtctggctaagggtttatctatcttgttgattt
tctcaaagaaccagctcctcatttggttgattctttgaaaagttcttctt
gtttccacttggttgatttcccccatgagtttgattatttcctgccttct
actcctcttgggtgaatttgtttccttttgttctagagcttttaggtgtg
ttgtcaagctgcttgtttgtgctctctctaatttctttttggaggcactc
agagctatgatttttcttcttagacatattttcattgtgtcccataagtt
tgggtatgttgtggtttcatttcattaaactctaaaaagtctttaatttc
tttctgtattcttccttgaccaaggtatcattgagagagtgttgttcagt
ttccacatgaatgcttgctttctatattacgttgttattgaagatcagcc
ttacttcatggtcattctgatacgatgcatgggacatttcaatattttgg
tatctcctggaatcctgtttgtggaccaaataaggtcaatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67823033_67824147
seq2: B6Ng01-139O20.b_50_1149

seq1  GAATTCATTCATTAGTCCCCACGATAGTATCCTTTAGTGGCACAGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTAGTCCCCACGATAGTATCCTTTAGTGGCACAGTATTC  50

seq1  TCTGTAAGGATTTGTTCAAGAGGAGCCTTTGGAGACAATTTGTTACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGGATTTGTTCAAGAGGAGCCTTTGGAGACAATTTGTTACCATT  100

seq1  ACTGCTTTCAACTTTATCTGTAGCCTACCTCCTGGGTCTGTCTAAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTCAACTTTATCTGTAGCCTACCTCCTGGGTCTGTCTAAAGGAC  150

seq1  TTATTTTTTTGCAAACATCACAGATTGTTCCTATGTTCTACTATAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTGCAAACATCACAGATTGTTCCTATGTTCTACTATAAGAGA  200

seq1  GGCCACTCCCCTGTCTCCTAAATCTGAGATGGGGCTGTGTGATTACTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCCCCTGTCTCCTAAATCTGAGATGGGGCTGTGTGATTACTCTC  250

seq1  AAGTTGAGAGCAGAAAGTCAAACAGAAGATACCTGAATTAGAGTCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGAGCAGAAAGTCAAACAGAAGATACCTGAATTAGAGTCTTGTA  300

seq1  CCTAAAGTCAGCATAAAAATTGTGGGTTGCTTCCCTTAGGCTTTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTCAGCATAAAAATTGTGGGTTGCTTCCCTTAGGCTTTTCCTTC  350

seq1  TTTGAGTTCAGCTAATTAACAATATGAACCTAAGTTGACAGCATTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCAGCTAATTAACAATATGAACCTAAGTTGACAGCATTGCTAA  400

seq1  GAAACAATACTGCTGTGGGAGGCCGAGAAAGTACTCTGACTGTTAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATACTGCTGTGGGAGGCCGAGAAAGTACTCTGACTGTTAAATTT  450

seq1  CTTCCTGTTTTATAAATACATGCTTATTATAGAGGCACCCTTTGTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTTTATAAATACATGCTTATTATAGAGGCACCCTTTGTTGTCT  500

seq1  CCTACATTTGGGTCTGACAGCTCTCATCTTCACCTATTGTTTGTACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTTGGGTCTGACAGCTCTCATCTTCACCTATTGTTTGTACAGGT  550

seq1  TTCAAACATATAATCAAACTTGACATACAGGCCTTGTTTTGTTTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATATAATCAAACTTGACATACAGGCCTTGTTTTGTTTTCAAAC  600

seq1  ATTAAAATAAATATGTTATATTAACAAGGCCATTTAAAATGAATTTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAAATATGTTATATTAACAAGGCCATTTAAAATGAATTTGTTA  650

seq1  CTTAGCCTCACAAGCACATTTAACTGAAGGAGTTCCACTGACAATTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTCACAAGCACATTTAACTGAAGGAGTTCCACTGACAATTACTT  700

seq1  ATCATGTTTTTACCTGTTTGATTGTTCTTAACCATGGACAACATGGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTTTACCTGTTTGATTGTTCTTAACCATGGACAACATGGTGAC  750

seq1  TTAACAGTAGTGGGCAATTAAGATCCTTTACTTTAGCACTGTTTTAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTAGTGGGCAATTAAGATCCTTTACTTTAGCACTGTTTTAAAAG  800

seq1  ACTCTAACAGTGAAAAGCGCAGCTGTTACTTTAGGAAACACATTCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACAGTGAAAAGCGCAGCTGTTACTTTAGGAAACACATTCATTGT  850

seq1  TTACATTTGTCCAACAGTCACTTGTTTTAAAAGATATTTAGCACTATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGTCCAACAGTCACTTGTTTTAAAAGATATTTAGCACTATGCA  900

seq1  CTGGGCCAAGAAAAGGGCAGTTGTCATTTTTGTCAAAGCTTAAAATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCAAGAAAAGGGCAGTTGTCATTTTTGTCAAAGCTTAAAATTTTG  950

seq1  AGGAAGTCAAATATAAGTTATATATCTTTAAAATGAATGAAAGAAAGTGT  1000
      |||||||| ||||||||||||||||||||||||||||||||   ||||||
seq2  AGGAAGTC-AATATAAGTTATATATCTTTAAAATGAATGAA--GAAGTGT  997

seq1  GAATAAGCTATGTGAGTGCAAGAGAAAAATCATGACAGACAATGGTCAGG  1050
      |||| |||||||||| |||||||| |||||||||||||| |||||||| |
seq2  GAAT-AGCTATGTGA-TGCAAGAG-AAAATCATGACAGAAAATGGTCA-G  1043

seq1  TTTCCACAAA--AGCAAGCAAAGAAGCAGGCAACCTGTTTTTGTTGTTTT  1098
      ||||||||||  ||||||      |||| |||||||||||||||||  ||
seq2  TTTCCACAAAGCAGCAAG------AGCA-GCAACCTGTTTTTGTTG--TT  1084

seq1  GATTGTTGTTGTTGTTT  1115
      || ||||||  ||||||
seq2  GA-TGTTGTGTTTGTTT  1100

seq1: chr5_51609631_51610141
seq2: B6Ng01-139O20.g_606_1110 (reverse)

seq1  CCAAATTGACCATATAATTGGTCACAAAACAGG-CCACAACAGATACAAA  49
      ||||||||||| |||  ||||||   |||||||    ||  |||||| ||
seq2  CCAAATTGACCTTAT--TTGGTCCACAAACAGGATTCCAGGAGATACCAA  48

seq1  AATATTGAAATTGTCCCATCTATCCTATCAG-ACCACCATGGCCTAAGGC  98
      |||||||||| ||||||||  ||| |||||| |  ||||||   ||||||
seq2  AATATTGAAA-TGTCCCATGCATCGTATCAGAATGACCATGAAGTAAGGC  97

seq1  TGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTGACGTGGAAA  148
      ||||||||||||||||| |||   || |||||| | |||| | |||||||
seq2  TGATCTTCAATAACAACGTAA--TATAGAAAGCAAGCATTCATGTGGAAA  145

seq1  CTGAACAACACTCTTCTCAATGATAACTTGGTCAAGGAAGGAATAAAGAA  198
      ||||||||||||| ||||||||||| ||||||||||||| ||||| ||||
seq2  CTGAACAACACTC-TCTCAATGATACCTTGGTCAAGGAA-GAATACAGAA  193

seq1  AGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACA  248
      ||||||||||||||||||||||||||||| ||||||| ||||||| ||| 
seq2  AGAAATTAAAGACTTTTTAGAGTTTAATG-AAATGAAACCACAACATACC  242

seq1  CAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCT  298
      ||||| |||||||||||||||||  || ||||||| | ||| ||||||||
seq2  CAAACTTATGGGACACAATGAAAATATGTCTAAGAAGAAAAATCATAGCT  292

seq1  CTGAGTGCCTCCAAGAAGAAACCGGAGAGAACACATACTAGCAGCTTGAC  348
      |||||||||||||| ||||||   |||||| |||| || |||||||||||
seq2  CTGAGTGCCTCCAAAAAGAAATTAGAGAGAGCACAAACAAGCAGCTTGAC  342

seq1  AACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGA  398
      |||||| ||||||||||||||| |||||||| ||||||||||||||||||
seq2  AACACACCTAAAAGCTCTAGAACAAAAGGAAACAAATTCACCCAAGAGGA  392

seq1  GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAA  448
      ||||| ||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GTAGAAGGCAGGAAATAATCAAACTCATGGGGGAAATCAACCAAGTGGAA  442

seq1  ACAAGAAGAACTATTCAAAGAATTAACCAAATGAGGAGTTGGTTCTTTGA  498
      |||||||||||| |||||||||| |||||||||||||| |||||||||||
seq2  ACAAGAAGAACTTTTCAAAGAATCAACCAAATGAGGAGCTGGTTCTTTGA  492

seq1  GAAAATCAACAAG  511
      |||||||||||||
seq2  GAAAATCAACAAG  505