BAC Information

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BAC

Clone NameB6Ng01-140B05
Chromosome5 (Build37)
Map Location 44,261,775 - 44,398,473
singlet/doubletdoublet
Overlap geneCd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1
Downstream geneLOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140B05.bB6Ng01-140B05.g
ACCDH938899DH938900
length1,131487
definitionDH938899|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B05, 5' end.DH938900|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,261,775 - 44,262,915)(44,397,981 - 44,398,473)
sequence
gaattcagttctttgcttccactctgtagcttctgggaatcaaattcaga
taattagaggtttggaagcaagcatccctacctgctagtctgtatcattt
gcctaacatattactattgtgatgagcatcttttcagacatctcacacac
acacacacacacacacacacacacacacacacacacacacactttatatg
aatagattagtggcaggtacatctcatgtgtcaggcacttatgtcaggag
ctgaggtgcagctcagtgatagagctctggcctggtttacaaagtgccct
gggttcaccctcagcatcgcagtagaggaatgagtggaacagaatcaacc
aggacagaaggcaacgatacatagacggttgctattgatatctccatttt
atagataagaaaagggagtcaaaagctgaaccctgttgagccctgaagcc
agatcattggagctggaatcttggctctgttgcgacctcagaccccgccc
tcagtgtatctgcgctgtggtgtgttcccaccttgtaaaatgggaacgtt
aatggcagcactcggcatctagagtaaacgaagaggactaagatgaataa
tcttgtcatggtaaatgctcaaaatgttactgctgtgtaaatggagtgtt
gcagatacctctccacaatagcaaatataaaataagtacaggcgttcatg
cattagaacattgttgtataattcagtcctccagtgctgaaagttacatc
gtttcgaatcttgttcacctaacacttggtggtgatagggtctctcatat
tgctacacccaaatctaccttattttttatagcgtagatgtaaccatttc
cagtcatcaaaaatttaatttccaattttaaattacatatctctgttaca
tttaggggatgggaggattgccataggcatgcatggaagttggttctttc
ttccctatgtaggttctgggaatcaactcagtctttaggcttggcagcat
ccactttatttaaatgaggcatcgtgctggccaattttctaatttttcat
tccattcattcattccatagatttttgagcctctggctgggatcaggggg
gggatctggccactggtgccaggaggggtag
agggtcttcagattttgatcaagaggtgaggggatcctggaattggcctt
tctggaaaactctaattggtttgcaaactgcctaattaaatctcttgctt
ccctcccaattactgtgttttccaggagaaagtgaagaagatccttgcct
ctttggactctgttcagcatttcctcaccaataacgtttccctcatcgtt
atcggggtgagttctcttttctcaaacaaaagtgtagataaagtgccctg
tgagtatattacaggatgaagtggctatgcccatgaagtatgctctcgtc
cagtggttttcaaccttcctaatgctgcaacccttttgaaacattctttt
tccactggtgaaatcagtcaattcaagacagattagattatattaattag
aggtttattgggaagctgttctcaggtgagttcattggcctccaaggact
gaggccagggacgtcaccatggggtggggtgggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44261775_44262915
seq2: B6Ng01-140B05.b_49_1179

seq1  GAATTCAGTTCTTTGCTTCCACTCTGTAGCTTCTGGGAATCAAATTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTTTGCTTCCACTCTGTAGCTTCTGGGAATCAAATTCAGA  50

seq1  TAATTAGAGGTTTGGAAGCAAGCATCCCTACCTGCTAGTCTGTATCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAGGTTTGGAAGCAAGCATCCCTACCTGCTAGTCTGTATCATTT  100

seq1  GCCTAACATATTACTATTGTGATGAGCATCTTTTCAGACATCTCACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACATATTACTATTGTGATGAGCATCTTTTCAGACATCTCACACAC  150

seq1  ACACACACACACACACACACACACACACACACACACACACACTTTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACTTTATATG  200

seq1  AATAGATTAGTGGCAGGTACATCTCATGTGTCAGGCACTTATGTCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTAGTGGCAGGTACATCTCATGTGTCAGGCACTTATGTCAGGAG  250

seq1  CTGAGGTGCAGCTCAGTGATAGAGCTCTGGCCTGGTTTACAAAGTGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGCAGCTCAGTGATAGAGCTCTGGCCTGGTTTACAAAGTGCCCT  300

seq1  GGGTTCACCCTCAGCATCGCAGTAGAGGAATGAGTGGAACAGAATCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACCCTCAGCATCGCAGTAGAGGAATGAGTGGAACAGAATCAACC  350

seq1  AGGACAGAAGGCAACGATACATAGACGGTTGCTATTGATATCTCCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAAGGCAACGATACATAGACGGTTGCTATTGATATCTCCATTTT  400

seq1  ATAGATAAGAAAAGGGAGTCAAAAGCTGAACCCTGTTGAGCCCTGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAGAAAAGGGAGTCAAAAGCTGAACCCTGTTGAGCCCTGAAGCC  450

seq1  AGATCATTGGAGCTGGAATCTTGGCTCTGTTGCGACCTCAGACCCCGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTGGAGCTGGAATCTTGGCTCTGTTGCGACCTCAGACCCCGCCC  500

seq1  TCAGTGTATCTGCGCTGTGGTGTGTTCCCACCTTGTAAAATGGGAACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATCTGCGCTGTGGTGTGTTCCCACCTTGTAAAATGGGAACGTT  550

seq1  AATGGCAGCACTCGGCATCTAGAGTAAACGAAGAGGACTAAGATGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGCACTCGGCATCTAGAGTAAACGAAGAGGACTAAGATGAATAA  600

seq1  TCTTGTCATGGTAAATGCTCAAAATGTTACTGCTGTGTAAATGGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATGGTAAATGCTCAAAATGTTACTGCTGTGTAAATGGAGTGTT  650

seq1  GCAGATACCTCTCCACAATAGCAAATATAAAATAAGTACAGGCGTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACCTCTCCACAATAGCAAATATAAAATAAGTACAGGCGTTCATG  700

seq1  CATTAGAACATTGTTGTATAATTCAGTCCTCCAGTGCTGAAAGTTACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAACATTGTTGTATAATTCAGTCCTCCAGTGCTGAAAGTTACATC  750

seq1  GTTTCGAATCTTGTTCACCTAACACTTGGTGGTGATAGGGTCTCTCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAATCTTGTTCACCTAACACTTGGTGGTGATAGGGTCTCTCATAT  800

seq1  TGCTACACCCAAATCTACCTTATTTTTTATAGCGTAGATGTAACCATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACCCAAATCTACCTTATTTTTTATAGCGTAGATGTAACCATTTC  850

seq1  CAGTCATCAAAAATTTAATTTCCAATTTTAAATTACATATCTCTGTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCAAAAATTTAATTTCCAATTTTAAATTACATATCTCTGTTACA  900

seq1  TTTAGGGGATGGGAGGATTGCCATAGGGCATGCATGGAAGTTGGTTCTTT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTAGGGGATGGGAGGATTGCCATA-GGCATGCATGGAAGTTGGTTCTTT  949

seq1  CTTCCCCTATGTAGGTTCTGGGAATCAAACTCAGGTCTTTAGGCTTGGCA  1000
      ||| |||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CTT-CCCTATGTAGGTTCTGGGAATC-AACTCA-GTCTTTAGGCTTGGCA  996

seq1  GCAATCACCTTTATTTAAATGAGACATCGTGCTGGCCCATTTTCTAATTT  1050
      || |||  ||||||||||||||| ||||||||||||| ||||||||||||
seq2  GC-ATCCACTTTATTTAAATGAGGCATCGTGCTGGCCAATTTTCTAATTT  1045

seq1  TTCAATCCCATTCATTCATTCATTAGATATTTTTGAGCCTCT-GCTGGGT  1099
      ||| || ||||||||||||||  |||  |||||||||||||| |||||| 
seq2  TTC-ATTCCATTCATTCATTCCATAG--ATTTTTGAGCCTCTGGCTGGGA  1092

seq1  TCCAGGTGGGTGATCTGGCTACTGGTGGCACAGGAGGGGTAG  1141
      | |||| ||| |||||||| |||||||   ||||||||||||
seq2  T-CAGGGGGGGGATCTGGCCACTGGTG--CCAGGAGGGGTAG  1131

seq1: chr5_44397981_44398473
seq2: B6Ng01-140B05.g_68_560 (reverse)

seq1  CTCCCCCACCCCACCCCATGGTGACGTCCCTGGCCTCAGTCCTTGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCCACCCCATGGTGACGTCCCTGGCCTCAGTCCTTGGAGGC  50

seq1  CAATGAACTCACCTGAGAACAGCTTCCCAATAAACCTCTAATTAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTCACCTGAGAACAGCTTCCCAATAAACCTCTAATTAATATAA  100

seq1  TCTAATCTGTCTTGAATTGACTGATTTCACCAGTGGAAAAAGAATGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTGTCTTGAATTGACTGATTTCACCAGTGGAAAAAGAATGTTTC  150

seq1  AAAAGGGTTGCAGCATTAGGAAGGTTGAAAACCACTGGACGAGAGCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTTGCAGCATTAGGAAGGTTGAAAACCACTGGACGAGAGCATAC  200

seq1  TTCATGGGCATAGCCACTTCATCCTGTAATATACTCACAGGGCACTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGCATAGCCACTTCATCCTGTAATATACTCACAGGGCACTTTAT  250

seq1  CTACACTTTTGTTTGAGAAAAGAGAACTCACCCCGATAACGATGAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTTGTTTGAGAAAAGAGAACTCACCCCGATAACGATGAGGGAA  300

seq1  ACGTTATTGGTGAGGAAATGCTGAACAGAGTCCAAAGAGGCAAGGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATTGGTGAGGAAATGCTGAACAGAGTCCAAAGAGGCAAGGATCTT  350

seq1  CTTCACTTTCTCCTGGAAAACACAGTAATTGGGAGGGAAGCAAGAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTCTCCTGGAAAACACAGTAATTGGGAGGGAAGCAAGAGATTT  400

seq1  AATTAGGCAGTTTGCAAACCAATTAGAGTTTTCCAGAAAGGCCAATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCAGTTTGCAAACCAATTAGAGTTTTCCAGAAAGGCCAATTCCA  450

seq1  GGATCCCCTCACCTCTTGATCAAAATCTGAAGACCCTGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCCTCACCTCTTGATCAAAATCTGAAGACCCTGAATTC  493