BAC Information

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BAC

Clone NameB6Ng01-140C18
Chromosome5 (Build37)
Map Location 114,176,591 - 114,364,756
singlet/doubletdoublet
Overlap geneD5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707
Downstream geneSsh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C18.bB6Ng01-140C18.g
ACCDH938973DH938974
length9531,114
definitionDH938973|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C18, 5' end.DH938974|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,364,146 - 114,364,756)(114,176,591 - 114,177,721)
sequence
gaattcttttcctgtctgactgacagccaaccgctcactgaaggcatttg
cggggaaaatgagtaaacactgaacaggaaatgggaacagaaaacttagc
cccatcgtcatggtcttgtgtgtctacttgactacacagtagatgtcctg
gtagctcattaaatacggtttctgggtgtgtctgggagtctgccaggggt
ttccagaggcaatgggttcaggctgccctggaacttaggatctgcctgcc
tccatctgcttcccaagtgctggatgctgagtgtgtatgccacccacatt
gaaatagccatgcaaatctttaatcccggcacccaggagatagaagcagg
ccagcctggtctacagagtgagttccaggacagccagggctacacagaga
aagaaaccctcttgaaaaacaaacataaataaatgcagacatatgtaaaa
ataagcatttaaatgggggctgggggaagtagagtgcatgatcttccctg
tggatacacatcatatagcccagaaagagcctgaacacaaagcctgaggg
aggttgaatttcttctccatcttcctgtttcctgtttgtttgtgagatag
ggcatctcttagcccaggttgactttattacatagtccagaggacattca
gggctttacctcccatttgttgggattaagggcctgggcgaccacaacca
gctttcctctgcttgtttgagctagggctttagtcttctgcatcctcatt
ctgatttgggatgggctggagagatggatcagtggttaagagcactgact
gcacttcagaaaggtcccgagttcaaatcccagcaactacatggtgtctc
acaaccatctgtaatgagatctgatgccctcttctggtgtgtctgaggac
agctacagtgtacttacacataataaataaacaaatcttaaaaagaaaaa
aag
gaattcttctggccccagctggattcacccacacagtttccagtctttct
ggttggtatctggcgacctcagttgggacagccagtctttcttcctcctc
tctccctgtgggtgtctcttgcgtctcccctggagggctgctctgggatg
ctctccagatgccctaggcatgtttctgtgaggatagcatgggtaccaaa
agagcaaggggaaatacccgtgtctctgttgacagggtgctggcaagcgt
cattggacaaaacatgccacgtgtcatgccagatccaggcagggggtggt
aaagtacagggcatgaatgcggccagcccacctcagagcaatacccaact
cccacactcacattcctagcctgtgctacatccctagccacctaacccag
ggaggaaaaacagaaaacaagaaaccccagcctctcttatggtaaactaa
tggccaaacactattcagttagagacgagtttgtttagagagcagacaca
agtctttgatgatttcacaaatgtatacaatgtatgttgatcagaccaac
ccatctccctgcctcctccaactcctccaggcttgcccttaactggaggc
aaacctcccaccactccggttataggtatctgctttcacaccggactgat
gactggaatctttagagtccatacggacatctcagaaccatcatctgggg
gaaaggcactgacccgccctctcctgtcttccaaggctcttctgagcttc
aggaccgcactcgcaagccttctgagaaggaggagtctcaggcagcttca
tcagagaagcgggatgcaggggtgccctctctgtgttggctggtcctttt
ggcggaagctagaacggtggctggctccagcgtgagtctgggcgactgga
tgctcgcgctgattggtttgaagctcagactgctgtgcagctaatgcctg
tctatctgtctgctagcttgtcagttaggaagaaactacctcccagaaca
aggtcttcatctggaaggactgtgagttcatccacgcagctagaaagtac
acgctgccagctctcttctcacctgtgtcgaatgcccactggctgggggc
tagggtcagtctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114364146_114364756
seq2: B6Ng01-140C18.b_49_659 (reverse)

seq1  TAAGAGATGCCCTATCTCACAAACAAACAGGAAACAGGAAGATGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATGCCCTATCTCACAAACAAACAGGAAACAGGAAGATGGAGAAG  50

seq1  AAATTCAACCTCCCTCAGGCTTTGTGTTCAGGCTCTTTCTGGGCTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAACCTCCCTCAGGCTTTGTGTTCAGGCTCTTTCTGGGCTATATG  100

seq1  ATGTGTATCCACAGGGAAGATCATGCACTCTACTTCCCCCAGCCCCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATCCACAGGGAAGATCATGCACTCTACTTCCCCCAGCCCCCATT  150

seq1  TAAATGCTTATTTTTACATATGTCTGCATTTATTTATGTTTGTTTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTTATTTTTACATATGTCTGCATTTATTTATGTTTGTTTTTCAA  200

seq1  GAGGGTTTCTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  250

seq1  GACCAGGCTGGCCTGCTTCTATCTCCTGGGTGCCGGGATTAAAGATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTGCTTCTATCTCCTGGGTGCCGGGATTAAAGATTTGC  300

seq1  ATGGCTATTTCAATGTGGGTGGCATACACACTCAGCATCCAGCACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATTTCAATGTGGGTGGCATACACACTCAGCATCCAGCACTTGGG  350

seq1  AAGCAGATGGAGGCAGGCAGATCCTAAGTTCCAGGGCAGCCTGAACCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGGAGGCAGGCAGATCCTAAGTTCCAGGGCAGCCTGAACCCAT  400

seq1  TGCCTCTGGAAACCCCTGGCAGACTCCCAGACACACCCAGAAACCGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGGAAACCCCTGGCAGACTCCCAGACACACCCAGAAACCGTATT  450

seq1  TAATGAGCTACCAGGACATCTACTGTGTAGTCAAGTAGACACACAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCTACCAGGACATCTACTGTGTAGTCAAGTAGACACACAAGACC  500

seq1  ATGACGATGGGGCTAAGTTTTCTGTTCCCATTTCCTGTTCAGTGTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGATGGGGCTAAGTTTTCTGTTCCCATTTCCTGTTCAGTGTTTACT  550

seq1  CATTTTCCCCGCAAATGCCTTCAGTGAGCGGTTGGCTGTCAGTCAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCCGCAAATGCCTTCAGTGAGCGGTTGGCTGTCAGTCAGACAG  600

seq1  GAAAAGAATTC  611
      |||||||||||
seq2  GAAAAGAATTC  611

seq1: chr5_114176591_114177721
seq2: B6Ng01-140C18.g_66_1179

seq1  GAATTCTTCTGGCCCCAGCTGGATTCACCCACACAGTTTCCAGTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGCCCCAGCTGGATTCACCCACACAGTTTCCAGTCTTTCT  50

seq1  GGTTGGTATCTGGCGACCTCAGTTGGGACAGCCAGTCTTTCTTCCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTATCTGGCGACCTCAGTTGGGACAGCCAGTCTTTCTTCCTCCTC  100

seq1  TCTCCCTGTGGGTGTCTCTTGCGTCTCCCCTGGAGGGCTGCTCTGGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTGGGTGTCTCTTGCGTCTCCCCTGGAGGGCTGCTCTGGGATG  150

seq1  CTCTCCAGATGCCCTAGGCATGTTTCTGTGAGGATAGCATGGGTACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGATGCCCTAGGCATGTTTCTGTGAGGATAGCATGGGTACCAAA  200

seq1  AGAGCAAGGGGAAATACCCGTGTCTCTGTTGACAGGGTGCTGGCAAGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGGGGAAATACCCGTGTCTCTGTTGACAGGGTGCTGGCAAGCGT  250

seq1  CATTGGACAAAACATGCCACGTGTCATGCCAGATCCAGGCAGGGGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACAAAACATGCCACGTGTCATGCCAGATCCAGGCAGGGGGTGGT  300

seq1  AAAGTACAGGGCATGAATGCGGCCAGCCCACCTCAGAGCAATACCCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGGGCATGAATGCGGCCAGCCCACCTCAGAGCAATACCCAACT  350

seq1  CCCACACTCACATTCCTAGCCTGTGCTACATCCCTAGCCACCTAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCACATTCCTAGCCTGTGCTACATCCCTAGCCACCTAACCCAG  400

seq1  GGAGGAAAAACAGAAAACAAGAAACCCCAGCCTCTCTTATGGTAAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAACAGAAAACAAGAAACCCCAGCCTCTCTTATGGTAAACTAA  450

seq1  TGGCCAAACACTATTCAGTTAGAGACGAGTTTGTTTAGAGAGCAGACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAACACTATTCAGTTAGAGACGAGTTTGTTTAGAGAGCAGACACA  500

seq1  AGTCTTTGATGATTTCACAAATGTATACAATGTATGTTGATCAGACCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGATGATTTCACAAATGTATACAATGTATGTTGATCAGACCAAC  550

seq1  CCATCTCCCTGCCTCCTCCAACTCCTCCAGGCTTGCCCTTAACTGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCCTGCCTCCTCCAACTCCTCCAGGCTTGCCCTTAACTGGAGGC  600

seq1  AAACCTCCCACCACTCCGGTTATAGGTATCTGCTTTCACACCGGACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCCACCACTCCGGTTATAGGTATCTGCTTTCACACCGGACTGAT  650

seq1  GACTGGAATCTTTAGAGTCCATACGGACATCTCAGAACCATCATCTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAATCTTTAGAGTCCATACGGACATCTCAGAACCATCATCTGGGG  700

seq1  GAAAGGCACTGACCCGCCCTCTCCTGTCTTCCAAGGCTCTTCTGAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCACTGACCCGCCCTCTCCTGTCTTCCAAGGCTCTTCTGAGCTTC  750

seq1  AGGACCGCACTCGCAAGCCTTCTGAGAAGGAGGAGTCTCAGGCAGCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGCACTCGCAAGCCTTCTGAGAAGGAGGAGTCTCAGGCAGCTTCA  800

seq1  TCAGAGAAGCGGGATGCAGGGGGTGCCCTCTCTGTGTTGGCTGGTCCTTT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGAGAAGCGGGATGCA-GGGGTGCCCTCTCTGTGTTGGCTGGTCCTTT  849

seq1  TGGCGGAAGCTAGAACGGTGGCTGGCTCCAGCGTGAGCCTGGGCGACTGG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCGGAAGCTAGAACGGTGGCTGGCTCCAGCGTGAGTCTGGGCGACTGG  899

seq1  ATGCTCGCCGCTGATTGGTTTTGAAGCTCAGACTGGCTGTGCAGCTAATG  950
      ||||||| |||||||||| ||||||||||||||| |||||||||||||||
seq2  ATGCTCG-CGCTGATTGG-TTTGAAGCTCAGACT-GCTGTGCAGCTAATG  946

seq1  CCTGGCCTTATCTGTCTGCTAGCTTGTCAGTTAAGGAAAGAAACCACCTC  1000
      |||| |  |||||||||||||||||||||||||  | ||||||| |||||
seq2  CCTGTC--TATCTGTCTGCTAGCTTGTCAGTTA--GGAAGAAACTACCTC  992

seq1  CCAGGAACAAGG-CCTCATCTGGAAAGAACTGTGAGTCCATCCACGCAGC  1049
      ||| |||||||| | |||||||| ||| ||||||||| ||||||||||||
seq2  CCA-GAACAAGGTCTTCATCTGG-AAGGACTGTGAGTTCATCCACGCAGC  1040

seq1  TAGAAAGTACAACGCCTGCCAGCTTCTCTTTCCTCAGCTGTGTCCGAGTG  1099
      |||||||||| ||| |||||||| ||||||  |||| |||||| ||| ||
seq2  TAGAAAGTAC-ACG-CTGCCAGC-TCTCTT--CTCACCTGTGT-CGAATG  1084

seq1  CCCACTGCCTGGGTGGCTAGGGTTCAGTCTAC  1131
      ||||||| ||||| |||||||| |||||||||
seq2  CCCACTGGCTGGG-GGCTAGGG-TCAGTCTAC  1114