BAC Information

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BAC

Clone NameB6Ng01-142O07
Chromosome5 (Build37)
Map Location 87,820,012 - 87,821,169
singlet/doubletsinglet
Overlap geneLOC100039818
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O07.bB6Ng01-142O07.g
ACCDH940974DH940975
length1,1591,195
definitionDH940974|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O07, 5' end.DH940975|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtaccttgtccttcaggacacagaacatgtactgcaacaccc
acagtggccatttaaaaagaaacacaatgaactatagaagtgttgaagtt
gtttacaagagtgttgaaacactttcacatccatagattcacaatcagga
gcagaacaacctgtcatatcctaatgtaaggtgaaacatgactttttact
tctgactatagctcaggctggccttcaactaattatcctcttgcctgagc
ccacagagtactcagctcacaggtgtgccccatcatgcctgtctacagaa
ttactttttgtacatgaaagcacaccttcaggagactaagtcttccacgt
gtttactgtgtctttgctatttatagaaagaatttttgcacagaaaaatg
ttaatttatagttctaaggtaggcagatgcccattggtgtgacagagctt
tcctgtgtgggtaccaaagttgtaaatttcagcagcttcagagttgatat
gtgtgttagttaactggaatgtgatcccaattctagaatgtcacagcttg
tggttcatctacttggataaactcagaactgttgttatttgtcattgtaa
gttcataaatagggttgtagggcctggagacatagcttagtggagaatgc
tggccttacatgcatgggactctaggtttaatccctagcaacacacacac
acacacacacacacacacacacaagcatacacacgagagcacacacacgg
gagcacacacacacacacacacacacacacacacacacacacacacacac
gcacacacgcgcgcgcgcgcacacctaagtttgtgattcttacggccagc
tctagaccagtgattagtcaattccaggttcacagcatcaaaagcctgaa
aaagatcatgctgttgcctttattaattttgtctctatagcacatttcaa
tcatgttctccctattgtaatggcagtgtggaagagagcccatcagaacc
attctgccagtaccatctccaccgacccttcagccatggagaacattcat
gctggacttggcatgaagtcttagtttcttcaagccagtggatgtgagca
cacaacacctgtgtatatgtacatcttggcaggatgtagtaaccctagtc
tttgtaaaa
gaattcatgcccagtcactgcccatctcggggcatagtaatgaggtgatg
ggcgagcaactaatcaggtgctgtcaagccacatcaggtgctgaaacgtc
acgctgagggctatataagcagcaccattttccggattcgtggtcttcct
tatgttgaagcaataaaagctttgccatagaaggatccggttgtccgagt
gaattcttaccagcgagatactagctcaggcaagagtgggagacttcaac
acaccactttcatcaatgaacagatcggggaaacagaaactaaacaggga
tatgctgaaactaacagaagttatgaaacaaatggacttaacagatatct
acaaaacattttatcctaaaacaaaaggatataccttcttctcagtgcct
cacaggaccttctccaaaactgaccatataattggtcacaaaacaggcct
caacagaaacaaaaatattgaaattgtcccatgcatcctatcagaccacc
atggacaaagactggtcttcaataacaacataaataatggaaagccaaca
ttcacgtggaaactgaacaacatgcttctcaatgataccttgatcaagga
aggaataaagaaagaaattaaggactttttagagtttaatgaaaataaag
ccacaacatacccaaacctatgggacacaacaaaagcatttcggagaggg
aagctcatatctctgagtgcctccaaaaagaaactaaagagagcacacac
taggagcctgccaacacatctaaaagctctagaaaaaaaggaagaaaatt
cacccaagaggagtagacggcaggaaataatcaaactcagggcgaaatca
accaagtggaaacaagaagaactattcaaagaatcaaccaaatgaggatc
tggttctttgagaaaatcacaagatagataaacccttagctagactcacg
agagggcacaggatagcatcgtaataacaaatcagaaatgaaagtgagaa
ataaaaacagatcctgaagaaatccaaaatacatcagattcttctacaaa
gctatactcaacaaacttgaaaactgatgaattgacaattctagacgatc
aggatctagtaatcaggatcagtaatgatccacagtcaattcctagatga
ggctatattccagcaaaattcagaacaagatggtttgtgtgccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87820012_87821169
seq2: B6Ng01-142O07.b_47_1205 (reverse)

seq1  TTTTACAAAGACTAGGGTTACTTACATCCTGCC-AGATGTACATATACAC  49
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTTTACAAAGACTAGGGTTAC-TACATCCTGCCAAGATGTACATATACAC  49

seq1  AGCTG-TGTGTGCTCACAATCACTGGCCTGATAGAAACTAAGACTTCATG  98
      || || ||||||||||||  ||||||| ||| ||||||||||||||||||
seq2  AGGTGTTGTGTGCTCACATCCACTGGCTTGA-AGAAACTAAGACTTCATG  98

seq1  CCAAGT-CAGCATGAATGTTCTCCATGGCTGAAAGGTCGGTGGAGATGGT  147
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAAGTCCAGCATGAATGTTCTCCATGGCTGAAGGGTCGGTGGAGATGGT  148

seq1  ACT-GCAGAAT-GTTCTGATGGGCTCTCATCCACACTGCCATTACATTAA  195
      ||| ||||||| |||||||||||||||| ||||||||||||||||| | |
seq2  ACTGGCAGAATGGTTCTGATGGGCTCTCTTCCACACTGCCATTACAAT-A  197

seq1  GGGAGAACATGATTGAAATGTGCTATAGAGACAAAATTAATAAAGGCAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACATGATTGAAATGTGCTATAGAGACAAAATTAATAAAGGCAAC  247

seq1  AGCATGATCTTTTTCAGGCTTTTGATGCTGTGAACCTGGAATTGACTAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATCTTTTTCAGGCTTTTGATGCTGTGAACCTGGAATTGACTAAT  297

seq1  CACTGGTCTAGAGCTTGGCCGTAAGAATCACAAACTTAGGTGTGCGCGCG  345
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTAGAGC-TGGCCGTAAGAATCACAAACTTAGGTGTGCGCGCG  346

seq1  CGCGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  396

seq1  TGTGTGTGTGCTCCCGTGTGTGTGCTCTCGTGTGTATGCTTGTGTGTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCTCCCGTGTGTGTGCTCTCGTGTGTATGCTTGTGTGTGTG  446

seq1  TGTGTGTGTGTGTGTGTGTGTGTTGCTAGGGATTAAACCTAGAGTCCCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTGCTAGGGATTAAACCTAGAGTCCCAT  496

seq1  GCATGTAAGGCCAGCATTCTCCACTAAGCTATGTCTCCAGGCCCTACAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAAGGCCAGCATTCTCCACTAAGCTATGTCTCCAGGCCCTACAAC  546

seq1  CCTATTTATGAACTTACAATGACAAATAACAACAGTTCTGAGTTTATCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATGAACTTACAATGACAAATAACAACAGTTCTGAGTTTATCCA  596

seq1  AGTAGATGAACCACAAGCTGTGACATTCTAGAATTGGGATCACATTCCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGAACCACAAGCTGTGACATTCTAGAATTGGGATCACATTCCAG  646

seq1  TTAACTAACACACATATCAACTCTGAAGCTGCTGAAATTTACAACTTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAACACACATATCAACTCTGAAGCTGCTGAAATTTACAACTTTGG  696

seq1  TACCCACACAGGAAAGCTCTGTCACACCAATGGGCATCTGCCTACCTTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACACAGGAAAGCTCTGTCACACCAATGGGCATCTGCCTACCTTAG  746

seq1  AACTATAAATTAACATTTTTCTGTGCAAAAATTCTTTCTATAAATAGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAATTAACATTTTTCTGTGCAAAAATTCTTTCTATAAATAGCAA  796

seq1  AGACACAGTAAACACGTGGAAGACTTAGTCTCCTGAAGGTGTGCTTTCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGTAAACACGTGGAAGACTTAGTCTCCTGAAGGTGTGCTTTCAT  846

seq1  GTACAAAAAGTAATTCTGTAGACAGGCATGATGGGGCACACCTGTGAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAAGTAATTCTGTAGACAGGCATGATGGGGCACACCTGTGAGCT  896

seq1  GAGTACTCTGTGGGCTCAGGCAAGAGGATAATTAGTTGAAGGCCAGCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTCTGTGGGCTCAGGCAAGAGGATAATTAGTTGAAGGCCAGCCTG  946

seq1  AGCTATAGTCAGAAGTAAAAAGTCATGTTTCACCTTACATTAGGATATGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGTCAGAAGTAAAAAGTCATGTTTCACCTTACATTAGGATATGA  996

seq1  CAGGTTGTTCTGCTCCTGATTGTGAATCTATGGATGTGAAAGTGTTTCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTTCTGCTCCTGATTGTGAATCTATGGATGTGAAAGTGTTTCAA  1046

seq1  CACTCTTGTAAACAACTTCAACACTTCTATAGTTCATTGTGTTTCTTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTAAACAACTTCAACACTTCTATAGTTCATTGTGTTTCTTTTT  1096

seq1  AAATGGCCACTGTGGGTGTTGCAGTACATGTTCTGTGTCCTGAAGGACAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCACTGTGGGTGTTGCAGTACATGTTCTGTGTCCTGAAGGACAA  1146

seq1  GGTACATGAATTC  1158
      |||||||||||||
seq2  GGTACATGAATTC  1159