BAC Information

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BAC

Clone NameB6Ng01-143P13
Chromosome5 (Build37)
Map Location 148,979,334 - 149,094,553
singlet/doubletdoublet
Overlap geneC130038G02Rik, LOC100041819
Upstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneSlc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143P13.bB6Ng01-143P13.g
ACCDH941768DH941769
length1,0031,132
definitionDH941768|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P13, 5' end.DH941769|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,093,550 - 149,094,553)(148,979,334 - 148,980,483)
sequence
gaattctgcgacacaaatttttatgcattctgtttttattttgactccct
tgaccaatgtgttctctagaagtatgctgttcaggggctggcaagatggc
agcacccacgctgggtagcttacaattgcctgtaactccagctccttggg
aaactggctaggatgccttcagcatctgtgggcgtctgcactcctgcgca
catacccacactcagactcacatcttgggattcttcatctgagagtaggt
ccttccttaggctacagtggggaatacccaactatgtctctcccactgcc
ccaaacactcctccacctagtccagattcaaatcaaaaccaacttcttca
gggtgcggactgactgtcaactttcaatgcccacaatacacatctgggtt
aaaaacctatccaggacttgctctccaatatcctgttcctgctgcccaga
gagacactgcaggtgattccgacaggcattcgagcagaggaccatgcata
agtgctgattctgaccgcgtgtcagacaccactgctgcatttattcaaac
caaggctgaggatggcagatgaggacttactaacagctactggtagaatg
tgggacaggaatttcaggagtgactggggatggccaatcctaccctagaa
tctgtaacatttgagctattcctacttttggcaacgtcagcagttttaga
aatgtcacctccccagacccctttctttctggtctccatctcctgtgatc
tccatagggcccaacgggtaagtagtattatgggccctggactcttcaga
gtcgtgtctgtagcttcgctttcttctttaagaggagcaagtgcaaccaa
tggctctagaaggctgtcaagggtcccctcttttccccactgcctttctt
ctgtgacaaagccattctccacaagtggagtgaggaatttgcctcaggga
ataagagcgtcactgagacgaaatgctgggtgattgaaccagccacggaa
tgc
gaattcccaaaacagcatctagattcttttctttgatgtctttaaatttt
aaacatgagataaacattaaattttccttcaaaagctttgaagactatag
aaggctttatcagagttctcagaaggccgaaataaattcttcaaaacttg
aattacttctatttttgactactaaaatcttagcttggggaataagagat
gtcccttatgtcttttggtggccaacagggtaatttgaatacattggagc
cgcacggattttaaaatgttcagagatggctgagaagatgatgtttaatc
acgaagtttgtagaagactgattcatcttatagacaacactggtggctct
ctcttgctcatcttacacattttgggctctcacctgcaaagagggggctc
catccaaactggaaagctgcctgtgtccttacacgttgagggatcctctg
gggtttgtgtgtcagcattggccaatggccttcttatcgtaatggatgga
cctgtgggttcatggcaggtgtcttgaggtcccccaccccgtgtggaatg
gcaaaggtgtgacttctcttttagccagggatggagccgagtctttgatc
atggctgtgtgtggaaattctccctaagacagtttccagtttaccaactg
agaaaacctggagggttcctcctatgaaatcaaagttggtatttttctgt
ctgtggaaaacagaagagaataagatgctaggcagataaccctggctgtg
gaagggaagttactttatctttggaatgagatcaagttttagctattgta
cactggacaaaacagggtctctatgaaattctgacattttataaactggt
ttcaacctaggacttccaagacttacagagagagaggccccatattttcc
aaattatcacacagattattatttccctgatgctgtttcaacttacattt
aggattattgctggctttttgaaccatttgtcattctcatttacaatact
tttcatctagactcttacctggggatctctcaggataaaagcattgctgt
gttcggatacacccttatggatgcctaaacttcatggcaagatttacatg
aatgcatttccacacgaagtctggagaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149093550_149094553
seq2: B6Ng01-143P13.b_48_1050 (reverse)

seq1  GCATTCCCGTGGCTGGTCCATTCACCCCAGCA-TTCGTCTCAGTGGACGC  49
      ||||| ||||||||||| || ||| ||||||| ||||||||||| |||||
seq2  GCATT-CCGTGGCTGGTTCAATCA-CCCAGCATTTCGTCTCAGT-GACGC  47

seq1  TC-TATTCCCTGA-GCAAATT-CTCACTCCAC-TGTGGAG-ATGGCTTTT  94
      || |||||||||| ||||||| |||||||||| ||||||| ||||| |||
seq2  TCTTATTCCCTGAGGCAAATTCCTCACTCCACTTGTGGAGAATGGC-TTT  96

seq1  GTCACAGAAGAAAGGCAGTGGGG-AAAGAGGGGACCCCTTGACAGCCTTC  143
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GTCACAGAAGAAAGGCAGTGGGGAAAAGAGGGGA-CCCTTGACAGCCTTC  145

seq1  TAGAGCCATGGTTTGCACTTGCTCCCTCTTAAAGAAGAAAGCGAAGCCTA  193
      ||||||||| | ||||||||||| |||||||||||||||||||||| |||
seq2  TAGAGCCATTGGTTGCACTTGCT-CCTCTTAAAGAAGAAAGCGAAG-CTA  193

seq1  CAGACACGACTCCTGAAGAGTCCAGGGCCCATAATACTACTTACCCGTTG  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGACT-CTGAAGAGTCCAGGGCCCATAATACTACTTACCCGTTG  242

seq1  GGCCCTATGGAGATCACAGGAGATGGAGACCAGAAAGAAAGGGGTCTGGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTATGGAGATCACAGGAGATGGAGACCAGAAAGAAAGGGGTCTGGG  292

seq1  GAGGTGACATTTCTAAAACTGCTGACGTTGCCAAAAGTAGGAATAGCTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACATTTCTAAAACTGCTGACGTTGCCAAAAGTAGGAATAGCTCA  342

seq1  AATGTTACAGATTCTAGGGTAGGATTGGCCATCCCCAGTCACTCCTGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACAGATTCTAGGGTAGGATTGGCCATCCCCAGTCACTCCTGAAA  392

seq1  TTCCTGTCCCACATTCTACCAGTAGCTGTTAGTAAGTCCTCATCTGCCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCCACATTCTACCAGTAGCTGTTAGTAAGTCCTCATCTGCCAT  442

seq1  CCTCAGCCTTGGTTTGAATAAATGCAGCAGTGGTGTCTGACACGCGGTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTTGGTTTGAATAAATGCAGCAGTGGTGTCTGACACGCGGTCA  492

seq1  GAATCAGCACTTATGCATGGTCCTCTGCTCGAATGCCTGTCGGAATCACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCACTTATGCATGGTCCTCTGCTCGAATGCCTGTCGGAATCACC  542

seq1  TGCAGTGTCTCTCTGGGCAGCAGGAACAGGATATTGGAGAGCAAGTCCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTCTCTCTGGGCAGCAGGAACAGGATATTGGAGAGCAAGTCCTG  592

seq1  GATAGGTTTTTAACCCAGATGTGTATTGTGGGCATTGAAAGTTGACAGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTTTTAACCCAGATGTGTATTGTGGGCATTGAAAGTTGACAGTC  642

seq1  AGTCCGCACCCTGAAGAAGTTGGTTTTGATTTGAATCTGGACTAGGTGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGCACCCTGAAGAAGTTGGTTTTGATTTGAATCTGGACTAGGTGGA  692

seq1  GGAGTGTTTGGGGCAGTGGGAGAGACATAGTTGGGTATTCCCCACTGTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTTGGGGCAGTGGGAGAGACATAGTTGGGTATTCCCCACTGTAG  742

seq1  CCTAAGGAAGGACCTACTCTCAGATGAAGAATCCCAAGATGTGAGTCTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAAGGACCTACTCTCAGATGAAGAATCCCAAGATGTGAGTCTGA  792

seq1  GTGTGGGTATGTGCGCAGGAGTGCAGACGCCCACAGATGCTGAAGGCATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTATGTGCGCAGGAGTGCAGACGCCCACAGATGCTGAAGGCATC  842

seq1  CTAGCCAGTTTCCCAAGGAGCTGGAGTTACAGGCAATTGTAAGCTACCCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGTTTCCCAAGGAGCTGGAGTTACAGGCAATTGTAAGCTACCCA  892

seq1  GCGTGGGTGCTGCCATCTTGCCAGCCCCTGAACAGCATACTTCTAGAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGTGCTGCCATCTTGCCAGCCCCTGAACAGCATACTTCTAGAGAA  942

seq1  CACATTGGTCAAGGGAGTCAAAATAAAAACAGAATGCATAAAAATTTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGTCAAGGGAGTCAAAATAAAAACAGAATGCATAAAAATTTGTG  992

seq1  TCGCAGAATTC  1004
      |||||||||||
seq2  TCGCAGAATTC  1003

seq1: chr5_148979334_148980483
seq2: B6Ng01-143P13.g_70_1201

seq1  GAATTCCCAAAACAGCATCTAGATTCTTTTCTTTGATGTCTTTAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAACAGCATCTAGATTCTTTTCTTTGATGTCTTTAAATTTT  50

seq1  AAACATGAGATAAACATTAAATTTTCCTTCAAAAGCTTTGAAGACTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGATAAACATTAAATTTTCCTTCAAAAGCTTTGAAGACTATAG  100

seq1  AAGGCTTTATCAGAGTTCTCAGAAGGCCGAAATAAATTCTTCAAAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTATCAGAGTTCTCAGAAGGCCGAAATAAATTCTTCAAAACTTG  150

seq1  AATTACTTCTATTTTTGACTACTAAAATCTTAGCTTGGGGAATAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCTATTTTTGACTACTAAAATCTTAGCTTGGGGAATAAGAGAT  200

seq1  GTCCCTTATGTCTTTTGGTGGCCAACAGGGTAATTTGAATACATTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTATGTCTTTTGGTGGCCAACAGGGTAATTTGAATACATTGGAGC  250

seq1  CGCACGGATTTTAAAATGTTCAGAGATGGCTGAGAAGATGATGTTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGGATTTTAAAATGTTCAGAGATGGCTGAGAAGATGATGTTTAATC  300

seq1  ACGAAGTTTGTAGAAGACTGATTCATCTTATAGACAACACTGGTGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTTTGTAGAAGACTGATTCATCTTATAGACAACACTGGTGGCTCT  350

seq1  CTCTTGCTCATCTTACACATTTTGGGCTCTCACCTGCAAAGAGGGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCATCTTACACATTTTGGGCTCTCACCTGCAAAGAGGGGGCTC  400

seq1  CATCCAAACTGGAAAGCTGCCTGTGTCCTTACACGTTGAGGGATCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACTGGAAAGCTGCCTGTGTCCTTACACGTTGAGGGATCCTCTG  450

seq1  GGGTTTGTGTGTCAGCATTGGCCAATGGCCTTCTTATCGTAATGGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTGTGTCAGCATTGGCCAATGGCCTTCTTATCGTAATGGATGGA  500

seq1  CCTGTGGGTTCATGGCAGGTGTCTTGAGGTCCCCCACCCCGTGTGGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGTTCATGGCAGGTGTCTTGAGGTCCCCCACCCCGTGTGGAATG  550

seq1  GCAAAGGTGTGACTTCTCTTTTAGCCAGGGATGGAGCCGAGTCTTTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTGTGACTTCTCTTTTAGCCAGGGATGGAGCCGAGTCTTTGATC  600

seq1  ATGGCTGTGTGTGGAAATTCTCCCTAAGACAGTTTCCAGTTTACCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGTGTGGAAATTCTCCCTAAGACAGTTTCCAGTTTACCAACTG  650

seq1  AGAAAACCTGGAGGGTTCCTCCTATGAAATCAAAGTTGGTATTTTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTGGAGGGTTCCTCCTATGAAATCAAAGTTGGTATTTTTCTGT  700

seq1  CTGTGGAAAACAGAAGAGAATAAGATGCTAGGCAGATAACCCTGGCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAACAGAAGAGAATAAGATGCTAGGCAGATAACCCTGGCTGTG  750

seq1  GAAGGGAAGTTACTTTATCTTTGGAATGAGATCAAGTTTTAGCTATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGTTACTTTATCTTTGGAATGAGATCAAGTTTTAGCTATTGTA  800

seq1  CACTGGACAAAACAGGGTCTCTATGAAATTCTGACATATTATAAACTGG-  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  CACTGGACAAAACAGGGTCTCTATGAAATTCTGACATTTTATAAACTGGT  850

seq1  TTCAACCTAGGACTTCCAAGACTTAACAGAGAAGAGAGGCCCCATATTTT  899
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TTCAACCTAGGACTTCCAAGACTT-ACAGAG-AGAGAGGCCCCATATTTT  898

seq1  CCAAATAATCACACAGATTA-TATTTCCCTGATGCTGTTTCAACTTACAT  948
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAAATTATCACACAGATTATTATTTCCCTGATGCTGTTTCAACTTACAT  948

seq1  TTAGGAATTATTGCTGGCTTTTTTGAAAACCATTTGTCATTCTCAATTTT  998
      ||||| |||||||||||||||||    ||||||||||||||||||  |||
seq2  TTAGG-ATTATTGCTGGCTTTTT---GAACCATTTGTCATTCTCA--TTT  992

seq1  ACACATACTTTTTCATCTAGACTCTTACACTGGGGAATCTCTCAGGAATA  1048
      ||| |||| ||||||||||||||||||| |||||| |||||||||||   
seq2  ACA-ATAC-TTTTCATCTAGACTCTTAC-CTGGGG-ATCTCTCAGGA--T  1036

seq1  AAAAGCATTGCTGTGTACCGATACACCCATAGTGATGGCTAAGACCTCAT  1098
      |||||||||||||||| | ||||||||| ||  |||| |||| || ||||
seq2  AAAAGCATTGCTGTGTTCGGATACACCCTTATGGATGCCTAA-ACTTCAT  1085

seq1  GCCCAGGAGTAACATGAATGGCATTCCACAGCAGAAAGTCTGGAGAGATT  1148
      |  || || | |||||||||   |||||   ||  ||||||||||| |||
seq2  G-GCAAGATTTACATGAATGCATTTCCA---CACGAAGTCTGGAGA-ATT  1130

seq1  GT  1150
      ||
seq2  GT  1132