BAC Information

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BAC

Clone NameB6Ng01-145A14
Chromosome5 (Build37)
Map Location 58,862,012 - 59,008,098
singlet/doubletdoublet
Overlap geneLOC100041385
Upstream geneEG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A14.bB6Ng01-145A14.g
ACCDH942552DH942553
length1,1391,171
definitionDH942552|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A14, 5' end.DH942553|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,006,939 - 59,008,098)(58,862,012 - 58,862,819)
sequence
gaattccttcaatgttccatttgcccagtgtgttcaatgaatttgcatta
taatggctaaaccttcctttataaattaatcttacagtttaccacacatt
ggttttcagaaactttaatctcgtcatcctaaaattgagaacgtttagga
aaggggaaaagtactttcaatttcaaactatgactggggaactttagtaa
caaatatggtaagttttgttcccacaattaaattatttttctttcctaac
ttagcatttttatcttacatgtcctcattgtttatattaaaagcaatata
gcctcatgtattatttattaattgttatgccctgagagcaatgatcataa
gagaaagtgatttagaaaaatgaccgtgaatatatttaacaatggccttg
tgaaatacatttttttttcagtgtgaattcatcactcccttaaatctggc
atcatgcaacagctaaataagtgactaatcaaatgtatattaaatatagg
cttaagctagcatgcctcaaaagcttaatgatcaattgtaattttcccca
aatatctgttagttcttaaatcaaagaattcatactattgatgtttcgat
ttaatgctatgttgtagctgtgcatcccaagttgtgaaataaaatgaggg
aaggaccctaggtcatacagtcaatcacattattatgacagggctttatc
taattcctgactacggaccctggagccataattttattgtaagacatttt
tttcttgatatttaccttgataggtaatgttatcagattattgtgtggcc
tctgtgctttgttgcaaaagtatgagaaccaaataatgaaaagaagagtg
tattttgtagagatacaagctgttatatgcagcacagggctgaaaggaaa
gctgggatcagtgcagattagagagcacacttaaattggatggaggggga
atctcagttgtctctctctagtatttaaccagagcatgtataatacatgc
actatgagtacagtgagatcttttagtctggcggtaaatgtctttcaaaa
ttgatgtgttacaaattatgagatgtatctgagcagaaacatgttttaaa
caatgtaaatatcacatcagtcaatagactattgggagg
gaattctttgtttagctgtgtaccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattggatattattcccc
tatcagatttaggattggtaaaaatcctttcccaatcttttggtggcccc
tttgtctttttgacagtgtctttctcgcagaggaattttaatccagcagc
ttaggtgctctggcaagggataacatcaacaaaccctctaggtctatatg
atctggatggaacacaggcttgctctgtattattttgtattctggctggg
atacctatatgcccttcatacaacatttaatccctaacaaggaagattag
gttactcttagagggaagcaaccgggtttgaaagtcatgtctaattaaag
agtaggcaaaatgatggataagagaaagattttacagtctgactcagaga
tagtatatgcccaacttgcatgagaacagtacaggaaggagaggctactt
acgatcagtgcatggagagaaaaatgtgtgtgtgtgtttggcaatttaag
tgggacagctttgcagagacaggttgcagagagaatcagttagacacaga
ctaagacagaaagagccagagaatgagaaggaaccaggagaataaatcat
attgtcaaagtcagtgtcaggccaagcagagcaattctaggagaagtcta
gagaagttggattgattccgttctcttggaaaggtgacattgtatggagg
ctagaagctttcagggctagggatatgtagaacagagaaagaagtgtttt
ttgctcaacccaagtcatgtatctgtacagcttgggtatggctttcatca
tctgatcatctgatgaaatttatacatctttgtctcatacaatatattct
gaccacagttcactatcatcccactcctgctagctcctcccacagactct
ccttttggtttccaccctccaaacctcattttacctcttcttgcttctct
ttcaatttatgcctcatcttcattatatatatgtatgttatgtaaccttg
tagtatgtatatgtaacactttgaataaggtacttgggtgtttgttttca
agctgatcattcgaatttggaataaccataaatgtgttatttccttgcca
aggaaccatccttgggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59006939_59008098
seq2: B6Ng01-145A14.b_46_1184 (reverse)

seq1  CCTCACAATAGTCTATTTGACTCGATGTTGATA-TTACATTGTTTTAAAA  49
      |||| |||||||||| |||||| |||| ||||| |||||||||||  |||
seq2  CCTCCCAATAGTCTA-TTGACT-GATG-TGATATTTACATTGTTT--AAA  45

seq1  ACATGTTTCTGCCTTCAGATACATCTCATAATTTGTAAACCAACATTAAA  99
      ||||||||||||  ||||||||||||||||||||||||    |||| || 
seq2  ACATGTTTCTGC--TCAGATACATCTCATAATTTGTAA---CACATCAA-  89

seq1  ATTTTTGAAAAGACATTTAACCGCAAGACTAAAAGATCTCACCTGTTACC  149
        ||||| |||||||||| ||||| |||||||||||||||| ||| ||| 
seq2  --TTTTG-AAAGACATTT-ACCGCCAGACTAAAAGATCTCA-CTG-TAC-  132

seq1  TTCATAGTGCATGTATTATACATGCTCTGGTTAAATTACTAGAGAGAGAC  199
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -TCATAGTGCATGTATTATACATGCTCTGGTTAAA-TACTAGAGAGAGAC  180

seq1  AACCTGAGATTCCCACCTCCATCCAATTTAAGTGTGCTCTCTAATCTGCA  249
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AA-CTGAGATTCCC-CCTCCATCCAATTTAAGTGTGCTCTCTAATCTGCA  228

seq1  CTGATCCCAGCTTTCCTTTCAGCCCTGTGCTGCATATAACAGCTTGTATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCAGCTTTCCTTTCAGCCCTGTGCTGCATATAACAGCTTGTATC  278

seq1  TCTACAAAATACACTCTTCTTTTCATTATTTGGTTCTCATACTTTTGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAATACACTCTTCTTTTCATTATTTGGTTCTCATACTTTTGCAA  328

seq1  CAAAGCACAGAGGCCACACAATAATCTGATAACATTACCTATCAAGGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACAGAGGCCACACAATAATCTGATAACATTACCTATCAAGGTAA  378

seq1  ATATCAAGAAAAAAATGTCTTACAATAAAATTATGGCTCCAGGGTCCGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGAAAAAAATGTCTTACAATAAAATTATGGCTCCAGGGTCCGTA  428

seq1  GTCAGGAATTAGATAAAGCCCTGTCATAATAATGTGATTGACTGTATGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATTAGATAAAGCCCTGTCATAATAATGTGATTGACTGTATGAC  478

seq1  CTAGGGTCCTTCCCTCATTTTATTTCACAACTTGGGATGCACAGCTACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTCCTTCCCTCATTTTATTTCACAACTTGGGATGCACAGCTACAA  528

seq1  CATAGCATTAAATCGAAACATCAATAGTATGAATTCTTTGATTTAAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATTAAATCGAAACATCAATAGTATGAATTCTTTGATTTAAGAAC  578

seq1  TAACAGATATTTGGGGAAAATTACAATTGATCATTAAGCTTTTGAGGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATATTTGGGGAAAATTACAATTGATCATTAAGCTTTTGAGGCAT  628

seq1  GCTAGCTTAAGCCTATATTTAATATACATTTGATTAGTCACTTATTTAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTAAGCCTATATTTAATATACATTTGATTAGTCACTTATTTAGC  678

seq1  TGTTGCATGATGCCAGATTTAAGGGAGTGATGAATTCACACTGAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATGATGCCAGATTTAAGGGAGTGATGAATTCACACTGAAAAAAA  728

seq1  AATGTATTTCACAAGGCCATTGTTAAATATATTCACGGTCATTTTTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTCACAAGGCCATTGTTAAATATATTCACGGTCATTTTTCTAA  778

seq1  ATCACTTTCTCTTATGATCATTGCTCTCAGGGCATAACAATTAATAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTCTCTTATGATCATTGCTCTCAGGGCATAACAATTAATAAATA  828

seq1  ATACATGAGGCTATATTGCTTTTAATATAAACAATGAGGACATGTAAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAGGCTATATTGCTTTTAATATAAACAATGAGGACATGTAAGAT  878

seq1  AAAAATGCTAAGTTAGGAAAGAAAAATAATTTAATTGTGGGAACAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTAAGTTAGGAAAGAAAAATAATTTAATTGTGGGAACAAAACT  928

seq1  TACCATATTTGTTACTAAAGTTCCCCAGTCATAGTTTGAAATTGAAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATTTGTTACTAAAGTTCCCCAGTCATAGTTTGAAATTGAAAGTA  978

seq1  CTTTTCCCCTTTCCTAAACGTTCTCAATTTTAGGATGACGAGATTAAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCCTTTCCTAAACGTTCTCAATTTTAGGATGACGAGATTAAAGT  1028

seq1  TTCTGAAAACCAATGTGTGGTAAACTGTAAGATTAATTTATAAAGGAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAACCAATGTGTGGTAAACTGTAAGATTAATTTATAAAGGAAGG  1078

seq1  TTTAGCCATTATAATGCAAATTCATTGAACACACTGGGCAAATGGAACAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCATTATAATGCAAATTCATTGAACACACTGGGCAAATGGAACAT  1128

seq1  TGAAGGAATTC  1160
      |||||||||||
seq2  TGAAGGAATTC  1139

seq1: chr5_58862012_58862819
seq2: B6Ng01-145A14.g_440_1237

seq1  GGGTTTGAAAGTCATGTCTAATTAAAGAGTAGGCAAAATGATGGATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAAAGTCATGTCTAATTAAAGAGTAGGCAAAATGATGGATAAGA  50

seq1  GAAAGATTTTACAGTCTGACTCAGAGATAGTATATGCCCAACTTGCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTTACAGTCTGACTCAGAGATAGTATATGCCCAACTTGCATGA  100

seq1  GAACAGTACAGGAAGGAGAGGCTACTTACGATCAGTGCATGGAGAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTACAGGAAGGAGAGGCTACTTACGATCAGTGCATGGAGAGAAAA  150

seq1  ATGTGTGTGTGTGTTTGGCAATTTAAGTGGGACAGCTTTGCAGAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTTTGGCAATTTAAGTGGGACAGCTTTGCAGAGACAGG  200

seq1  TTGCAGAGAGAATCAGTTAGACACAGACTAAGACAGAAAGAGCCAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGAGAATCAGTTAGACACAGACTAAGACAGAAAGAGCCAGAGAA  250

seq1  TGAGAAGGAACCAGGAGAATAAATCATATTGTCAAAGTCAGTGTCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAACCAGGAGAATAAATCATATTGTCAAAGTCAGTGTCAGGCC  300

seq1  AAGCAGAGCAATTCTAGGAGAAGTCTAGAGAAGTTGGATTGATTCCGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGCAATTCTAGGAGAAGTCTAGAGAAGTTGGATTGATTCCGTTC  350

seq1  TCTTGG-AAGGTGACATTGTATGGAGGCTAGAAGCTTTCAGGGCTAGGGA  399
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAGGTGACATTGTATGGAGGCTAGAAGCTTTCAGGGCTAGGGA  400

seq1  TATGTAGAACAGAGAAAGAAGTGTTTTTTGCTCAACCCAAGTCATGTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAACAGAGAAAGAAGTGTTTTTTGCTCAACCCAAGTCATGTATC  450

seq1  TGTACAGCTTGGGTATGGCTTTCATCATCTGATCATCTGATGAAATTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCTTGGGTATGGCTTTCATCATCTGATCATCTGATGAAATTTAT  500

seq1  ACATCTTTGTCTCATACAATATATTCTGACCACAGTTCACTATCATCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGTCTCATACAATATATTCTGACCACAGTTCACTATCATCCCA  550

seq1  CTCCTGCTAGCTCCCTCCCACAGACTCTCCTTTTGGTTTCCACCCTCCAA  599
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTAGCT-CCTCCCACAGACTCTCCTTTTGGTTTCCACCCTCCAA  599

seq1  ACCCTCATTTTACCTCTTCTTGC-TCTCTTTCAAATTTATGGCCTCATCT  648
      | ||||||||||||||||||||| |||||||| ||||||| |||||||||
seq2  A-CCTCATTTTACCTCTTCTTGCTTCTCTTTC-AATTTAT-GCCTCATCT  646

seq1  TCATTAATTATTATATGTATGTATATGTAAAACCTTTGTAGTATGTAATA  698
      ||||||  || ||||||||||| |||||||   | ||||||||||| |||
seq2  TCATTA--TA-TATATGTATGT-TATGTAA---CCTTGTAGTATGT-ATA  688

seq1  TGTAACACTTTGAATAAAGTTACTTGTGTGTATGTTTTCAGGGCTGATCA  748
      ||||||||||||||| ||| |||||| |||| ||||||||  ||||||||
seq2  TGTAACACTTTGAAT-AAGGTACTTGGGTGTTTGTTTTCA-AGCTGATCA  736

seq1  TTCG-ATATTGAATAACAATAGATGTGTTATTCTCTTGCCAAGG-ACCAT  796
      |||| || | ||||||| ||| ||||||||||  |||||||||| |||||
seq2  TTCGAATTTGGAATAACCATAAATGTGTTATTTCCTTGCCAAGGAACCAT  786

seq1  CCTTGGGTTTTT  808
      ||||||||||||
seq2  CCTTGGGTTTTT  798