BAC Information

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BAC

Clone NameB6Ng01-146F10
Chromosome5 (Build37)
Map Location 15,028,886 - 15,029,990
singlet/doubletsinglet
Overlap geneSpeer4c
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F10.bB6Ng01-146F10.g
ACCDH943508DH943509
length1,0431,106
definitionDH943508|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F10, 5' end.DH943509|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgagt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctctgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatgatcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttttgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcctgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagtcttctttgtttccacttggtgatttacccctgagttttgattatt
tcctgccgtctactcttcttgggtgaatttgctttcttttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttt
ctggaggcactcgagcctttgagtttccctctaagatatgctttcattgt
gtcctaaaggttgtggaacgttgtggtctcattttctataacc

gaattctaggtctgaaaaaggggacagaacacctgaataaggaagatggt
ctcaagagtcactacttgcaaatcaatttttattcataagaaatagaatt
ttaaaaaaaaaggttttaaaagttcaattaatatagagttaaaggcaaaa
acaatgaaatacaagaacaagaacatataacttctaaataacatatcaat
actcaaagaacaaaaaccaaacagatttctgcacttttagccgcacagcc
ctacagcctgctgctcctcttggacacttggtggcagtgcagtcgcctca
gttctctgccaagagactatgtctgaagagaaaagggaacaacgcactgg
atcagccatggcttcctagtaaaggcctattcaccctaagaaaatgaatt
atatggaagaagattcatccgaggaagattgtgggtgctggagatggtgc
tcagcaggggcctcctggcctggcaactcattctgcaggatgctgtcttc
ttcagctgtggccaatcccagctctcttgcagcttctgagacctgggaga
ggaagacagttactaagacacaggagtggaggagacaggcatggcagctg
tgaggctactgcctcctaccacctcaactgtacttgacagtcaacattaa
tattttaactgaagttattgatgttaaatctaaagacagggcaaaatatt
caacaacagtcacaaaaacatggactgacaaagatcaactcaggcttcta
tcagtttccaaccaaaacatggcaaaggaagagacctcagtggattacag
gaagaaaggagaaggggcacaggacacccagatcatgataatgagaagca
ctcatttgacatttgtacttgggctctaatccctccaaggtgcaagcaca
tgggatgtcataagaactctgcctgtcttctgtctaaggacccagatctc
atctcaaacctctgctatagcattccacctatatgagacatgcagaatgt
gaacatgttattcacctgacaccttgtagtggctgcagattaaagcagaa
gttgaaagggcatttgtcagttgtaacagtttcccaaaagaagctcattc
aatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15028886_15029990
seq2: B6Ng01-146F10.g_68_1173

seq1  GAATTCTAGGTCTGAAAAAGGGGACAGAACACCTGAATAAGGAAGATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCTGAAAAAGGGGACAGAACACCTGAATAAGGAAGATGGT  50

seq1  CTCAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATT  100

seq1  TTAAAAAAAAAGGTTTTAAAAGTTCAATTAATATAGAGTTAAAGGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAGGTTTTAAAAGTTCAATTAATATAGAGTTAAAGGCAAAA  150

seq1  ACAATGAAATACAAGAACAAGAACATATAACTTCTAAATAACATATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAATACAAGAACAAGAACATATAACTTCTAAATAACATATCAAT  200

seq1  ACTCAAAGAACAAAAACCAAACAGATTTCTGCACTTTTAGCCGCACAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGAACAAAAACCAAACAGATTTCTGCACTTTTAGCCGCACAGCC  250

seq1  CTACAGCCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCTGCTGCTCCTCTTGGACACTTGGTGGCAGTGCAGTCGCCTCA  300

seq1  GTTCTCTGCCAAGAGACTATGTCTGAAGAGAAAAGGGAACAACGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGCCAAGAGACTATGTCTGAAGAGAAAAGGGAACAACGCACTGG  350

seq1  ATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAAATGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAAATGAATT  400

seq1  ATATGGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGC  450

seq1  TCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTC  500

seq1  TTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGA  550

seq1  GGAAGACAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTG  600

seq1  TGAGGCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAA  650

seq1  TATTTTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATT  700

seq1  CAACAACAGTCACAAAAACATGGACTGACAAAGATCAACTCAGGCTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGTCACAAAAACATGGACTGACAAAGATCAACTCAGGCTTCTA  750

seq1  TCAG-TTCCAACCAAAACATGGCAAAGGAAGAGACCTCAGTGGATTACAG  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCAACCAAAACATGGCAAAGGAAGAGACCTCAGTGGATTACAG  800

seq1  GAAGAAAGGAGAA-GGGCACAGGACACCCAGATCAATGATAATGAGAAGC  848
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GAAGAAAGGAGAAGGGGCACAGGACACCCAGATC-ATGATAATGAGAAGC  849

seq1  ACTCATTTGACATTTGTACTT-GGCTCTAATCCCTCCAAGGTGCAAGCAC  897
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTCATTTGACATTTGTACTTGGGCTCTAATCCCTCCAAGGTGCAAGCAC  899

seq1  ATGGGATGTCATAAGACCTCTGCCTGTCTCCTGTCTAAGGACCCAGATCT  947
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ATGGGATGTCATAAGAACTCTGCCTGTCTTCTGTCTAAGGACCCAGATCT  949

seq1  CA-CTCAAACCTCTGC-ATAGCATTCCACCTATCATGAGGACATGCAAGA  995
      || ||||||||||||| |||||||||||||||| |||| ||||||| |||
seq2  CATCTCAAACCTCTGCTATAGCATTCCACCTAT-ATGA-GACATGC-AGA  996

seq1  ATGTG-ACATGTTATTCACCTGACAACCTGTAGTGGGCTGCAGATTAAAG  1044
      ||||| ||||||||||||||||||| | |||||| |||||||||||||||
seq2  ATGTGAACATGTTATTCACCTGACACCTTGTAGT-GGCTGCAGATTAAAG  1045

seq1  CAG-AGTTGAAAGGTGCATTTGCCAGTGGTAACAGTGTCTCAAAAGAAGC  1093
      ||| |||||||||| ||||||| |||| |||||||| || ||||||||||
seq2  CAGAAGTTGAAAGG-GCATTTGTCAGTTGTAACAGTTTCCCAAAAGAAGC  1094

seq1  TAATTCAGTGTC  1105
      | ||||| ||||
seq2  TCATTCAATGTC  1106


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