BAC Information

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BAC

Clone NameB6Ng01-146F18
Chromosome5 (Build37)
Map Location 41,835,794 - 41,991,491
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC208522
Downstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F18.bB6Ng01-146F18.g
ACCDH943524DH943525
length368977
definitionDH943524|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F18, 5' end.DH943525|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,835,794 - 41,836,161)(41,990,523 - 41,991,491)
sequence
tctggtctccttgggaaattggaatagcagtgaagataaatttgtttatc
ataaatcctggggttctgaacatttcagagaaaggtttgaaactcacaga
taaaattccatagccagcattccatgggttgtcataaagccacacagctc
tggataactacctaaatcagacgctctcaaggcacatatctggccacttc
tggtcatctcagtttaagcacccttttgtagcaaagtccctttccactca
gtgcacattctggcaactgtttgcacctcctgaagtttccctttaacctt
gcaaatctcttcccctccagaagttgcatcagccttcaaaaaaccaaact
gggggtgggggtgggggt
gaattcattgtggcaaatttcctaatcacacttcaccagtgacaaacaag
tgaggtagaacgtagaaggtgctcagagacagagttagaatcattgttct
cctggcagcactgaggagtttttggtcatgtccaagtgtgaggctatgaa
gcaggcagcaggtgttatgctccagtggcctgatttactgctgctgctgg
ggccaggagagtcacttatgtgacacactcagcttcttgatgttctaaat
gcagcttgtgagcctgactgtggaaggatcttcccctgctttctcctgtc
accccagaaatttcataaacatctattgcatccttcttcatgatttgtaa
tacccaggatacagtttccagataatgcctgcctgtagccattaagggca
tgaataggcaaactctctgtaagtgacagagaatgtggaaagccattctt
ttcagaagacctaaatcctgaagctagctttgaaagaatgtaacttgctc
tcaggattgatttagataagataaatacctggagacagaaagtctatgaa
tgcttctggtaagtagctctttttacctgaaggaacatatttagtatcat
agcatagttctatagtttggaatacatatacattcagcactaaagaaaat
gactcaggtaattgtgtttgaacaatttgaaaacaaggaccaacaaatat
tttgatgggttggtgatgctcagaaagacaggtggaaggatgcaggtaaa
tgggaggaatctctgtgtctctgttggcttcggtggcttcctcagctcct
tcaggccagcatttaaatgttcggtttttttttttagtgtcctccaccct
gtttccagcatctcccacacatgcctttgcagctggccctgtcccctcct
acatcactctttttcctggcactcatcagagcagactaaccggttactgt
ttgctttccactgcccttccctcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41835794_41836161
seq2: B6Ng01-146F18.b_51_418

seq1  TCTGGTCTCCTTGGGAAATTGGAATAGCAGTGAAGATAAATTTGTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCCTTGGGAAATTGGAATAGCAGTGAAGATAAATTTGTTTATC  50

seq1  ATAAATCCTGGGGTTCTGAACATTTCAGAGAAAGGTTTGAAACTCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTGGGGTTCTGAACATTTCAGAGAAAGGTTTGAAACTCACAGA  100

seq1  TAAAATTCCATAGCCAGCATTCCATGGGTTGTCATAAAGCCACACAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCATAGCCAGCATTCCATGGGTTGTCATAAAGCCACACAGCTC  150

seq1  TGGATAACTACCTAAATCAGACGCTCTCAAGGCACATATCTGGCCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTACCTAAATCAGACGCTCTCAAGGCACATATCTGGCCACTTC  200

seq1  TGGTCATCTCAGTTTAAGCACCCTTTTGTAGCAAAGTCCCTTTCCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCTCAGTTTAAGCACCCTTTTGTAGCAAAGTCCCTTTCCACTCA  250

seq1  GTGCACATTCTGGCAACTGTTTGCACCTCCTGAAGTTTCCCTTTAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATTCTGGCAACTGTTTGCACCTCCTGAAGTTTCCCTTTAACCTT  300

seq1  GCAAATCTCTTCCCCTCCAGAAGTTGCATCAGCCTTCAAAAAACCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTCTTCCCCTCCAGAAGTTGCATCAGCCTTCAAAAAACCAAACT  350

seq1  GGGGGTGGGGGTGGGGGT  368
      ||||||||||||||||||
seq2  GGGGGTGGGGGTGGGGGT  368

seq1: chr5_41990523_41991491
seq2: B6Ng01-146F18.g_66_1042 (reverse)

seq1  GTGGGAGGGAAGGGCAGT-GAAAGCAAGACAGTAAACGGTATGTCTGCTC  49
      |||||||||||||||||| |||||||| ||||||| ||||  ||||||||
seq2  GTGGGAGGGAAGGGCAGTGGAAAGCAA-ACAGTAACCGGTTAGTCTGCTC  49

seq1  TGATGAGTGCCAGG-AAAAGAGTGATGTAGGAGGGGACAGGGCCAGCTGC  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATGAGTGCCAGGAAAAAGAGTGATGTAGGAGGGGACAGGGCCAGCTGC  99

seq1  AAAGGCATGTGTGGGAGATGCTGGAAACAGGGTGGAGGGCACT-AAAAAA  147
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AAAGGCATGTGTGGGAGATGCTGGAAACAGGGTGGAGGACACTAAAAAAA  149

seq1  AAAACCAAACATTTAAATGCTGGCCTGAAGGAGCTGAGGGAGCCACCGAA  197
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAACCGAACATTTAAATGCTGGCCTGAAGGAGCTGAGGAAGCCACCGAA  199

seq1  GCC-ACAGAGACACAGAGATTCCTCCCATTTACCTGCATCCTTCCACCTG  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGAGACACAGAGATTCCTCCCATTTACCTGCATCCTTCCACCTG  249

seq1  TC-TTCTGAGCATCACC-ACCCATC-AAATATTTGTTGGTCCTTGTTTTC  293
      || |||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TCTTTCTGAGCATCACCAACCCATCAAAATATTTGTTGGTCCTTGTTTTC  299

seq1  -AATTGTTCAAACACAATTACCTGAGTCATTTTCTTTAGTGCTGAATGTA  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTCAAACACAATTACCTGAGTCATTTTCTTTAGTGCTGAATGTA  349

seq1  TATGTATTCC-AACTATAGAACTATGCTATGATACTAAATATGTTCCTTC  391
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCCAAACTATAGAACTATGCTATGATACTAAATATGTTCCTTC  399

seq1  AGGTAAAAAGAGCTACTTACCAGAAGCATTCATAGACTTTCTGTCTCCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAAGAGCTACTTACCAGAAGCATTCATAGACTTTCTGTCTCCAG  449

seq1  GTATTTATCTTATCTAAATCAATCCTGAGAGCAAGTTACATTCTTTCAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATCTTATCTAAATCAATCCTGAGAGCAAGTTACATTCTTTCAAA  499

seq1  GCTAGCTTCAGGATTTAGGTCTTCTGAAAAGAATGGCTTTCCACATTCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTCAGGATTTAGGTCTTCTGAAAAGAATGGCTTTCCACATTCTC  549

seq1  TGTCACTTACAGAGAGTTTGCCTATTCATGCCCTTAATGGCTACAGGCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTACAGAGAGTTTGCCTATTCATGCCCTTAATGGCTACAGGCAG  599

seq1  GCATTATCTGGAAACTGTATCCTGGGTATTACAAATCATGAAGAAGGATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCTGGAAACTGTATCCTGGGTATTACAAATCATGAAGAAGGATG  649

seq1  CAATAGATGTTTATGAAATTTCTGGGGTGACAGGAGAAAGCAGGGGAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATGTTTATGAAATTTCTGGGGTGACAGGAGAAAGCAGGGGAAGA  699

seq1  TCCTTCCACAGTCAGGCTCACAAGCTGCATTTAGAACATCAAGAAGCTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACAGTCAGGCTCACAAGCTGCATTTAGAACATCAAGAAGCTGA  749

seq1  GTGTGTCACATAAGTGACTCTCCTGGCCCCAGCAGCAGCAGTAAATCAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACATAAGTGACTCTCCTGGCCCCAGCAGCAGCAGTAAATCAGG  799

seq1  CCACTGGAGCATAACACCTGCTGCCTGCTTCATAGCCTCACACTTGGACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGAGCATAACACCTGCTGCCTGCTTCATAGCCTCACACTTGGACA  849

seq1  TGACCAAAAACTCCTCAGTGCTGCCAGGAGAACAATGATTCTAACTCTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAAACTCCTCAGTGCTGCCAGGAGAACAATGATTCTAACTCTGT  899

seq1  CTCTGAGCACCTTCTACGTTCTACCTCACTTGTTTGTCACTGGTGAAGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCACCTTCTACGTTCTACCTCACTTGTTTGTCACTGGTGAAGTG  949

seq1  TGATTAGGAAATTTGCCACAATGAATTC  969
      ||||||||||||||||||||||||||||
seq2  TGATTAGGAAATTTGCCACAATGAATTC  977