BAC Information

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BAC

Clone NameB6Ng01-146I16
Chromosome5 (Build37)
Map Location 78,290,366 - 78,459,534
singlet/doubletdoublet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I16.bB6Ng01-146I16.g
ACCDH943661DH943662
length6171,099
definitionDH943661|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I16, 5' end.DH943662|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,290,366 - 78,290,993)(78,458,438 - 78,459,534)
sequence
gaattctttttagtctgttcatttttgtttgtttgctattttcatgttgt
tatttaagagataaagctcttatcctatcaaaaccaaccaaacaaataac
aaaaaaccttccagatatgatattgcttagtcccttaaacccagggcatg
accacatgaccttttctcgaccagagagatgtggataattataacccccc
ccccccccccgccacttattcagagtgggagtttggcaagaatttgagct
tccttttttagttactttggtaacccattactgattcatgccactaataa
ataggaacagagttctctttaaccaagaggcagtataattgtggtccagt
ctgctgatcttcctgaagctctgctccctgtccacagactaagtgataat
gggaggacattcttctagctaccatcctaagaagtaaatgaggcaataca
cacaacgctcacgatgtgaaacagtgtgtacacaaggaccaagtgactgg
gaccttagtcatgtagaggaacaaatggacactggctgctcctgggaaaa
aactccagacatggtgacatgaggcaaactcggactcggggtccaccact
ccactctaacccattct
gaattcccagtgtgaagttaggggcttagtgacctttaaaactgccatct
tgtacctgtgaaatcagctcttttccaaggtttccaggaataaccagtgg
tatccatttgtctgaaggaaagaagagatattttaattattccttttgtc
tagtccattatatgaatatctctgaaattctttgtatgaaatgtagtgaa
attcatcgtgtaatattttgtacaggcaaggaagtcatttgtggaagatc
ttccatttatttaactctataaaaatacttttggataaagtgtgagttcc
tcctctttctctgttggcagtgaaatttctttaggttatagggtagtggt
tgtttttatgctcattttcctttacaagaaaaatcaatgagcaatatgcc
gtgcagttgctcacatgcataatagtgttgtcgaaagcattactttataa
tggaaaaactgcttctgagttgcatgatgttctcaaagatctagactact
caaataaaacattgagcagcttagaaaaaaaatgcagaagccaaagcaga
aggagaagaaaggtgtatggaagaaagaggaatataaagcttaagaaaaa
gatctgtcacagtcagtctaaatggcaggttgaaaaacaatactattttc
taagcaggaatcttatacagctgaaattgataggatcataatccactgaa
atatcagtctacatccaaacattttaaaattgcatattaatcacattgga
ggattgcctatttgtatttatgtattaccatgaaataaaactttctagga
agcagaaagagcacttgtcttagtgtaaataagatgacaaaattctttca
aaagtcaaaaacttacattatgtacattagacaacagatacttatttctt
tttgtaaacagaccactcactgcattcccccatctctttacctctatatc
taaagtatcaattagatcttctcctaccaactttcttccttatccacccc
tttgtctcagcatactacttcagcaagcattccaaataaatctacaagcc
agtctggcccaagaaacaagtataggcattgttctttccctccaatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78290366_78290993
seq2: B6Ng01-146I16.b_48_664

seq1  GAATTCTTTTTAGTCTGTTCATTTTTGTTTGTTTGCTATTTTCATGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTCTGTTCATTTTTGTTTGTTTGCTATTTTCATGTTGT  50

seq1  TATTTAAGAGATAAAGCTCTTATCCTATCAAAACCAACCAAACAAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGAGATAAAGCTCTTATCCTATCAAAACCAACCAAACAAATAAC  100

seq1  AAAAAACCTTCCAGATATGATATTGCTTAGTCCCTTAAACCCAGGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTTCCAGATATGATATTGCTTAGTCCCTTAAACCCAGGGCATG  150

seq1  ACCACATGACCTTTTCTCGACCAGAGAGATGTGGATAATTATAACCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGACCTTTTCTCGACCAGAGAGATGTGGATAATTATAACCCCCC  200

seq1  CCCCCCCCCCGCCACTTATTCAGAGTGGGAGTTTGGCAAGAATTTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCGCCACTTATTCAGAGTGGGAGTTTGGCAAGAATTTGAGCT  250

seq1  TCCTTTTTTAGTTACTTTGGTAACCCATTACTGATTCATGCCACTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTAGTTACTTTGGTAACCCATTACTGATTCATGCCACTAATAA  300

seq1  ATAGGAACAGAGTTCTCTTTAACCAAGAGGCAGTATAATTGTGGTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAACAGAGTTCTCTTTAACCAAGAGGCAGTATAATTGTGGTCCAGT  350

seq1  CTGCTGATCTTCCTGAAGCTCTGCTCCCTGTCCACAGACTAAGTGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATCTTCCTGAAGCTCTGCTCCCTGTCCACAGACTAAGTGATAAT  400

seq1  GGGAGGACATTCTTCTAGCTACCATCCTAAGAAGTAAATGAGGCAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACATTCTTCTAGCTACCATCCTAAGAAGTAAATGAGGCAATACA  450

seq1  CACAACGCTCACGATGTGAAACAGTGTGTACACAAGGACCAAGTGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACGCTCACGATGTGAAACAGTGTGTACACAAGGACCAAGTGACTGG  500

seq1  GACCTTAGTCATGTAGAGGAACAGAGTGGACACTGGCTGCTCCTGGGAGA  550
      ||||||||||||||||||||||| | |||||||||||||||||||||| |
seq2  GACCTTAGTCATGTAGAGGAACA-AATGGACACTGGCTGCTCCTGGGA-A  548

seq1  GAAACTCCCAGACATGGTGACCATGATGGCAAACTCGGACTCTGGTGTTC  600
       ||||| ||||||||||||| ||||| |||||||||||||||  | | ||
seq2  AAAACT-CCAGACATGGTGA-CATGA-GGCAAACTCGGACTC--GGGGTC  593

seq1  CACCAGCTCCAACTTCTGAGCCCATTCT  628
      ||||| |||||   ||| | ||||||||
seq2  CACCA-CTCCA--CTCT-AACCCATTCT  617

seq1: chr5_78458438_78459534
seq2: B6Ng01-146I16.g_69_1167 (reverse)

seq1  TAGAGTTGGAGGAGAAGGACAATGC--TTACTTGTTTCTTGGGCAGGCAT  48
      |||| |||||||  ||| |||||||   ||||||||||||||||  |  |
seq2  TAGA-TTGGAGGGAAAGAACAATGCCTATACTTGTTTCTTGGGCCAGACT  49

seq1  GGCTTGTAGATTTATTGTGAATGCTTGCTGGAGTAGTATGCTGAGACAAA  98
      ||||||||||||||||  |||||||||||| |||||||||||||||||||
seq2  GGCTTGTAGATTTATTTGGAATGCTTGCTGAAGTAGTATGCTGAGACAAA  99

seq1  GGGGTGGATAAGGAAGAAAGTT-GTAAGAGAAGATCTGAATGATACTTTA  147
      |||||||||||||||||||||| ||| |||||||||| | ||||||||||
seq2  GGGGTGGATAAGGAAGAAAGTTGGTAGGAGAAGATCTAATTGATACTTTA  149

seq1  GATATAGAGGTAAAGAGGATGGGGGCAATGCAGTGAGTTGTCTGTTTACA  197
      |||||||||||||||| |||||||| |||||||||||| |||||||||||
seq2  GATATAGAGGTAAAGA-GATGGGGG-AATGCAGTGAGTGGTCTGTTTACA  197

seq1  ATAAAGAAATAAGTATCTGTTGTCT-ATGTACATAATGTATGTTTTTGAC  246
      | ||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  A-AAAGAAATAAGTATCTGTTGTCTAATGTACATAATGTAAGTTTTTGAC  246

seq1  TTTTGAAAGAATTTTGTCATCTTA-TTACACTAAGACAAGTTGCTCTTTC  295
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TTTTGAAAGAATTTTGTCATCTTATTTACACTAAGACAAG-TGCTCTTTC  295

seq1  TGCTTCCTAGAAAGTTTTATTTCATGGTAATACATAAATAC-AATAGGCA  344
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTTCCTAGAAAGTTTTATTTCATGGTAATACATAAATACAAATAGGCA  345

seq1  ATCCTCCAATGTGATTAATATGCAATTTTAAAATGTTTGGATGTAGACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAATGTGATTAATATGCAATTTTAAAATGTTTGGATGTAGACTG  395

seq1  ATATTTCAGTGGATTATGATCCTATCAATTTCAGCTGTATAAGATTCCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGTGGATTATGATCCTATCAATTTCAGCTGTATAAGATTCCTG  445

seq1  CTTAG-AAATAGTATTGTTTTTCAACCTGCCATTTAGACTGACTGTGACA  493
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAATAGTATTGTTTTTCAACCTGCCATTTAGACTGACTGTGACA  495

seq1  GATCTTTTTCTTAAGCTTTATATTCCTCTTTCTTCCATACACCTTTCTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTTCTTAAGCTTTATATTCCTCTTTCTTCCATACACCTTTCTTC  545

seq1  TCCTTCTGCTTTGGCTTCTGCATTTTTTTTCTAAGCTGCTCAATGTTTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCTTTGGCTTCTGCATTTTTTTTCTAAGCTGCTCAATGTTTTA  595

seq1  TTTGAGTAGTCTAGATCTTTGAGAACATCATGCAACTCAGAAGCAGTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAGTCTAGATCTTTGAGAACATCATGCAACTCAGAAGCAGTTTT  645

seq1  TCCATTATAAAGTAATGCTTTCGACAACACTATTATGCATGTGAGCAACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATAAAGTAATGCTTTCGACAACACTATTATGCATGTGAGCAACT  695

seq1  GCACGGCATATTGCTCATTGATTTTTCTTGTAAAGGAAAATGAGCATAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCATATTGCTCATTGATTTTTCTTGTAAAGGAAAATGAGCATAAA  745

seq1  AACAACCACTACCCTATAACCTAAAGAAATTTCACTGCCAACAGAGAAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACTACCCTATAACCTAAAGAAATTTCACTGCCAACAGAGAAAG  795

seq1  AGGAGGAACTCACACTTTATCCAAAAGTATTTTTATAGAGTTAAATAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAACTCACACTTTATCCAAAAGTATTTTTATAGAGTTAAATAAAT  845

seq1  GGAAGATCTTCCACAAATGACTTCCTTGCCTGTACAAAATATTACACGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCTTCCACAAATGACTTCCTTGCCTGTACAAAATATTACACGAT  895

seq1  GAATTTCACTACATTTCATACAAAGAATTTCAGAGATATTCATATAATGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACTACATTTCATACAAAGAATTTCAGAGATATTCATATAATGG  945

seq1  ACTAGACAAAAGGAATAATTAAAATATCTCTTCTTTCCTTCAGACAAATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACAAAAGGAATAATTAAAATATCTCTTCTTTCCTTCAGACAAATG  995

seq1  GATACCACTGGTTATTCCTGGAAACCTTGGAAAAGAGCTGATTTCACAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACTGGTTATTCCTGGAAACCTTGGAAAAGAGCTGATTTCACAGG  1045

seq1  TACAAGATGGCAGTTTTAAAGGTCACTAAGCCCCTAACTTCACACTGGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATGGCAGTTTTAAAGGTCACTAAGCCCCTAACTTCACACTGGGA  1095

seq1  ATTC  1097
      ||||
seq2  ATTC  1099