BAC Information

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BAC

Clone NameB6Ng01-146I22
Chromosome5 (Build37)
Map Location 80,393,002 - 80,486,979
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I22.bB6Ng01-146I22.g
ACCDH943671DH943672
length1,1371,064
definitionDH943671|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I22, 5' end.DH943672|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,393,002 - 80,394,140)(80,485,898 - 80,486,979)
sequence
gaattcttcataaataatctaaataaaactaatttatagctgtattaata
gtaattaatgttaagccgtatataaatatagttgttacccctcattaaaa
gctttattttttcatcatattgagagcattaaaaaatttacagctgctca
aaacatagaaaaacactcattagggagatcacagaccataagatcacaga
ggttgtgttataaatctataacacaaggggttagggctcaaggaacattg
ctgaagaaggatatacaattctaagattcaaaggaccaatatgtacctgg
catgaaattatttccatgaaatctcaaaagtatcattgtctaaacaagac
ataactaatccatgaatttacatgacattctggataagcgatatctcaca
aggacccatccatgtatgaagaattataggcaattaataactagagagat
aaagaaattatgtatataattatataaaatcaatatataaatgtagcata
taatatacaaacaaatataaatgttgtaaataatatataaacaaagatag
atagatagatagatagatagatagatagatacacagagagagaaagagat
acacagagagagagagagatacacagagagagaaagaaatacagagtgca
gcagacaaatcaacacacaggcaggatccctgtcatgggttgttcaatac
caagttgtcagctctaaacatatgcatacaatcaacactaagtgcttcca
gcatgatttatatatattttttgtctgtatacatgcagcactaataatta
aagataattaatttgaggacaaaataagcctttactcccctccccccttt
ttttcttctcaacttgctagcaggttgaattgagtgcttacatgacgtga
catctccctaggagcctttgatggaatttttcttctttaaagaagagttg
tttccagaaaacatgtccactgtcccagtatactatctctgatgtttctg
cctatttctttctgtatttgaccattccatttccctagagatcatggatc
aaacactggatgtcctagaaacctctcatgactcctctctccaacagtag
aaatattattgtacattaacactgtgactgcactttt
gaattcctatagctggttcacctggaagtcaatttttagaattttaaaaa
ttctcctcactgatttgtgtagtgtctgacacgattagcaatcccatcaa
cactgaatgagtgtttctgttccttcataacctgatcagaatttgttgtc
cactgaattttcaatttcacacattctgactgaggctaagtggaatcttt
taacagtttcaatttgcattttatattgttaaaggtattaaacatattct
tagatatttcataaaaagttttatttcttcttttaaaattatgtgcagtg
tcataactgattttaaataaatttctttataaatgtttttattttaataa
aactaatacaatgtcaatttaaaccccatgacccaagctttagaaactac
aaacagtatcaaaaaaactatgttgtgctgcaaagacttctgcttcattt
actttatttactcctaatcaccatatgaaattgtctctgggatcacctga
caagactttcttttactcttacaatgctttctctcagcaaagaagctatg
tttggagtgagatttgctcttgctgtgtctgtcatttggctccatccttg
attttcttcttccggtccagaccttcagttttaaaagcagcttcaaacta
aaaaaaaaaaaaaattcccacaattcaggtctctgaaaaacttaaatctc
ccactgaaaatcaccaatgagttgtgcagcaatcacatgctagagattca
ggacaatcataaaggtcgtaggaaagcttgcactggttgattttttttaa
tgtcagaaacctgaaaatgcacagttctgaacttcaagaaacggagagag
ccaaatgaaggggcttggcatttgatcactaaaaatactcaccataaaac
accaaaacggatatgagcacaaaattcgtgtatgtatttcaaagtgaaca
ccagtgtcattttcctctaatactacatatgcaagtgatttaaatatgaa
tttgtgatggagagaaaataaacaaaaggaatatctaaagactgtctgat
cacgatcccacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80393002_80394140
seq2: B6Ng01-146I22.b_47_1183

seq1  GAATTCTTCATAAATAATCTAAATAAAACTAATTTATAGCTGTATTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAAATAATCTAAATAAAACTAATTTATAGCTGTATTAATA  50

seq1  GTAATTAATGTTAAGCCGTATATAAATATAGTTGTTACCCCTCATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAATGTTAAGCCGTATATAAATATAGTTGTTACCCCTCATTAAAA  100

seq1  GCTTTATTTTTTCATCATATTGAGAGCATTAAAAAATTTACAGCTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTTTTCATCATATTGAGAGCATTAAAAAATTTACAGCTGCTCA  150

seq1  AAACATAGAAAAACACTCATTAGGGAGATCACAGACCATAAGATCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAAAAACACTCATTAGGGAGATCACAGACCATAAGATCACAGA  200

seq1  GGTTGTGTTATAAATCTATAACACAAGGGGTTAGGGCTCAAGGAACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTTATAAATCTATAACACAAGGGGTTAGGGCTCAAGGAACATTG  250

seq1  CTGAAGAAGGATATACAATTCTAAGATTCAAAGGACCAATATGTACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGGATATACAATTCTAAGATTCAAAGGACCAATATGTACCTGG  300

seq1  CATGAAATTATTTCCATGAAATCTCAAAAGTATCATTGTCTAAACAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTATTTCCATGAAATCTCAAAAGTATCATTGTCTAAACAAGAC  350

seq1  ATAACTAATCCATGAATTTACATGACATTCTGGATAAGCGATATCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAATCCATGAATTTACATGACATTCTGGATAAGCGATATCTCACA  400

seq1  AGGACCCATCCATGTATGAAGAATTATAGGCAATTAATAACTAGAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCATCCATGTATGAAGAATTATAGGCAATTAATAACTAGAGAGAT  450

seq1  AAAGAAATTATGTATATAATTATATAAAATCAATATATAAATGTAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATGTATATAATTATATAAAATCAATATATAAATGTAGCATA  500

seq1  TAATATACAAACAAATATAAATGTTGTAAATAATATATAAACAAAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAAACAAATATAAATGTTGTAAATAATATATAAACAAAGATAG  550

seq1  ATAGATAGATAGATAGATAGATAGATAGATACACAGAGAGAGAAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATACACAGAGAGAGAAAGAGAT  600

seq1  ACACAGAGAGAGAGAGAGATACACAGAGAGAGAAAGAAATACAGAGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGAGATACACAGAGAGAGAAAGAAATACAGAGTGCA  650

seq1  GCAGACAAATCAACACACAGGCAGGATCCCTGTCATGGGTTGTTCAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAATCAACACACAGGCAGGATCCCTGTCATGGGTTGTTCAATAC  700

seq1  CAAGTTGTCAGCTCTAAACATATGCATACAATCAACACTAAGTGCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTCAGCTCTAAACATATGCATACAATCAACACTAAGTGCTTCCA  750

seq1  GCATGATTTATATATATTTTTTGTCTGTATACATGCAGCACTAATAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTATATATATTTTTTGTCTGTATACATGCAGCACTAATAATTA  800

seq1  AAGATAATTAATTTGAGGACAAAATAAGCCTTTACTCCCCTCCCCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATTAATTTGAGGACAAAATAAGCCTTTACTCCCCTCCCCCCTTT  850

seq1  TTTTCTTCTCAACTTGCTAGCAGGTTGAATTGAGTGCTTACATGACGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTCAACTTGCTAGCAGGTTGAATTGAGTGCTTACATGACGTGA  900

seq1  CATCTCCCTAGGAGCCTTTGATGGAATTTTTCTTCTTTAAAGAAGAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTAGGAGCCTTTGATGGAATTTTTCTTCTTTAAAGAAGAGTTG  950

seq1  TTTCCAGAAAACATGTCCACTGTCCCAGTATACTATCTCTGATGTTTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAAACATGTCCACTGTCCCAGTATACTATCTCTGATGTTTCTG  1000

seq1  CCTATTTCTTTCTGTATTTGACCATTCCATTTCCCTAGAGATCATGGGAA  1050
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CCTATTTCTTTCTGTATTTGACCATTCCATTTCCCTAGAGATCATGG--A  1048

seq1  TCAAACACTTGAATGTCCTTAAAGAAA-CTCTCATGA---CTCTCT-CAA  1095
      |||||||| || |||||||   ||||| |||||||||   |||||| |||
seq2  TCAAACAC-TGGATGTCCT---AGAAACCTCTCATGACTCCTCTCTCCAA  1094

seq1  CAGTAG-AATATTATTGTACATTAAACACTGTTGACTGCACTTTT  1139
      |||||| |||||||||||||||| ||||||| |||||||||||||
seq2  CAGTAGAAATATTATTGTACATT-AACACTG-TGACTGCACTTTT  1137

seq1: chr5_80485898_80486979
seq2: B6Ng01-146I22.g_65_1128 (reverse)

seq1  AAAGTGTGATCGTGTATCAGACAGTTCTTTAGATATTCTTTTTGTTTTAT  50
      |||||| ||||||| ||||||||| ||||||||||||| ||||| |||||
seq2  AAAGTGGGATCGTG-ATCAGACAG-TCTTTAGATATTCCTTTTG-TTTAT  47

seq1  TTTCTCTTCCATCCACAAATTTCATATTTTTAAATCACTTGCATATTGTA  100
      |||||| ||||| |||||| ||||||  ||||||||||||||||| ||||
seq2  TTTCTC-TCCAT-CACAAA-TTCATA--TTTAAATCACTTGCATA-TGTA  91

seq1  GTGTTTAGAGGAAAAATTGAACACTGGTGTTCACTTTGAAATACATAACA  150
      ||  |||||||||||  || |||||||||||||||||||||||||| |||
seq2  GT-ATTAGAGGAAAA--TG-ACACTGGTGTTCACTTTGAAATACAT-ACA  136

seq1  CCGAATTTTTGTGCTCAATATCCGTTTTTGGTTGTTTTATGGTGAGTATT  200
       |||| |||||||||| |||||||||||  | ||||||||||||||||||
seq2  -CGAA-TTTTGTGCTC-ATATCCGTTTT--GGTGTTTTATGGTGAGTATT  181

seq1  TTTAGTGATCAAATGCCAAGCCCCTTCATTTGGCTCTCTCCGTTTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGATCAAATGCCAAGCCCCTTCATTTGGCTCTCTCCGTTTCTTGA  231

seq1  AGTTCAGAACTGTGCATTTTCAGGTTTCTGACATTAAAAAAAATCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAACTGTGCATTTTCAGGTTTCTGACATTAAAAAAAATCAACCA  281

seq1  GTGCAAGCTTTCCTACGACC-TTATGATTGTCCTGAATCTCTAGCATGTG  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGCAAGCTTTCCTACGACCTTTATGATTGTCCTGAATCTCTAGCATGTG  331

seq1  ATTGCTGCACAACTCATTGGTGATTTTCAGTGGGAGATTTAAGTTTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCACAACTCATTGGTGATTTTCAGTGGGAGATTTAAGTTTTTCA  381

seq1  GAGACCTGAATTGTGGGAATTTTTTTTTTTTTTTAGTTTGAAGCTGCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGAATTGTGGGAATTTTTTTTTTTTTTTAGTTTGAAGCTGCTTT  431

seq1  TAAAACTGAAGGTCTGGACCGGAAGAAGAAAATCAAGGATGGAGCCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAGGTCTGGACCGGAAGAAGAAAATCAAGGATGGAGCCAAAT  481

seq1  GACAGACACAGCAAGAGCAAATCTCACTCCAAACATAGCTTCTTTGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAGCAAGAGCAAATCTCACTCCAAACATAGCTTCTTTGCTGA  531

seq1  GAGAAAGCATTGTAAGAGTAAAAGAAAGTCTTGTCAGGTGATCCCAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCATTGTAAGAGTAAAAGAAAGTCTTGTCAGGTGATCCCAGAGA  581

seq1  CAATTTCATATGGTGATTAGGAGTAAATAAAGTAAATGAAGCAGAAGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCATATGGTGATTAGGAGTAAATAAAGTAAATGAAGCAGAAGTCT  631

seq1  TTGCAGCACAACATAGTTTTTTTGATACTGTTTGTAGTTTCTAAAGCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCACAACATAGTTTTTTTGATACTGTTTGTAGTTTCTAAAGCTTG  681

seq1  GGTCATGGGGTTTAAATTGACATTGTATTAGTTTTATTAAAATAAAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGGGTTTAAATTGACATTGTATTAGTTTTATTAAAATAAAAACA  731

seq1  TTTATAAAGAAATTTATTTAAAATCAGTTATGACACTGCACATAATTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGAAATTTATTTAAAATCAGTTATGACACTGCACATAATTTTA  781

seq1  AAAGAAGAAATAAAACTTTTTATGAAATATCTAAGAATATGTTTAATACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAATAAAACTTTTTATGAAATATCTAAGAATATGTTTAATACC  831

seq1  TTTAACAATATAAAATGCAAATTGAAACTGTTAAAAGATTCCACTTAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAATATAAAATGCAAATTGAAACTGTTAAAAGATTCCACTTAGCC  881

seq1  TCAGTCAGAATGTGTGAAATTGAAAATTCAGTGGACAACAAATTCTGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAATGTGTGAAATTGAAAATTCAGTGGACAACAAATTCTGATC  931

seq1  AGGTTATGAAGGAACAGAAACACTCATTCAGTGTTGATGGGATTGCTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGAAGGAACAGAAACACTCATTCAGTGTTGATGGGATTGCTAAT  981

seq1  CGTGTCAGACACTACACAAATCAGTGAGGAGAATTTTTAAAATTCTAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCAGACACTACACAAATCAGTGAGGAGAATTTTTAAAATTCTAAAA  1031

seq1  ATTGACTTCCAGGTGAACCAGCTATAGGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  ATTGACTTCCAGGTGAACCAGCTATAGGAATTC  1064