BAC Information

Click to search

BAC

Clone NameB6Ng01-146K14
Chromosome5 (Build37)
Map Location 88,317,021 - 88,318,088
singlet/doubletsinglet
Overlap geneOdam
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494
Downstream geneBC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146K14.bB6Ng01-146K14.g
ACCDH943741DH943742
length1,1741,062
definitionDH943741|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K14, 5' end.DH943742|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggtttgtacaaccactctggaaatcagtctggcagttcctca
ggaaattggacatagtactacctgaggatccatcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgatccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggga
caaaacaaccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtggagactatggcggggcctagcaaa
cacagaagtggattctcacagtcagctaatggatggatcacaggttccca
tggaggagctagagaaagtagccaggagctaagggatctgcaccctatag
tggacacatatgactaacctgtacccggagctcttgactctagctgcata
tgtatcaaagtaggccctagcagcctcactggaagagagccctatggtac
tcgcgaatctttatggcccatactagggggacgcccggggctaaaatggg
attgtcgctgatagcgtcgtatgt
gaattccttgacaaagacagaaaggctcatttcactctcctttttactcc
cttttgttcccttgggtttccagtatcagggctgttaaggctgtgtacca
cacaccactgtctagaggcaccataagtggcttttgggcatctgctgatg
ttggcctaacctgatttttttaaaaacaggcagctgaaatgagtctctag
gacccttgaatacctatgacataactatgctggaagtgatgagttcaata
agaccagtagcatgtcttctctgtatttaagttccagcactggggaagag
ctaaaaaataaaaacatgagttgacattttgccttcccaaattttgtttc
atatgattttgcatttgtacctggtgtgtagttataaatagcatatatga
ttataatcatatttattattataaataacactaacacacattattggcct
attataaaatttcctctgaaaactttcccagtctcttttatgcagtattt
aaaatataattccatattataattaaatgagtatttctcttcaggaagaa
aaaaattaatattaaactaataaattatgtgactatagaaaccctgtcaa
tattaggataatcaattgtataataactcagattcaaagggaacacggct
atatataaattgtgattcacatgaaagactgttgacttgttcaaacaaag
ttattctgcttggatcttctataagtataaattatgtaattaagtttcac
tcacactgtcattacataataacacaattctagacattatctcactgtat
atccttaggtatgtagtgagtcagatatgtgacaaatacaattacttcat
ttttaaggtccagaaacatagatttaatgagattaagtatcttaacccta
tgaaccaatgccctgttagaagtcagtcctctacccccttttcaacacta
tacagtgcttctctgcatagcttatgtcaaaagctttgtgggctattcta
gaattataactctaagctctatgtaaacctgagatattaaactcttacca
accgacaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88317021_88318088
seq2: B6Ng01-146K14.g_68_1129

seq1  GAATTCCTTGACAAAGACAGAAAGGCTCATTTCACTCTCCTTTTTACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACAAAGACAGAAAGGCTCATTTCACTCTCCTTTTTACTCC  50

seq1  CTTTTGTTCCCTTGGGTTTCCAGTATCAGGGCTGTTAAGGCTGTGTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCCTTGGGTTTCCAGTATCAGGGCTGTTAAGGCTGTGTACCA  100

seq1  CACACCACTGTCTAGAGGCACCATAAGTGGCTTTTGGGCATCTGCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTGTCTAGAGGCACCATAAGTGGCTTTTGGGCATCTGCTGATG  150

seq1  TTGGCCTAACCTGATTTTTTTAAAAACAGGCAGCTGAAATGAGTCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAACCTGATTTTTTTAAAAACAGGCAGCTGAAATGAGTCTCTAG  200

seq1  GACCCTTGAATACCTATGACATAACTATGCTGGAAGTGATGAGTTCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGAATACCTATGACATAACTATGCTGGAAGTGATGAGTTCAATA  250

seq1  AGACCAGTAGCATGTCTTCTCTGTATTTAAGTTCCAGCACTGGGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTAGCATGTCTTCTCTGTATTTAAGTTCCAGCACTGGGGAAGAG  300

seq1  CTAAAAAATAAAAACATGAGTTGACATTTTGCCTTCCCAAATTTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAATAAAAACATGAGTTGACATTTTGCCTTCCCAAATTTTGTTTC  350

seq1  ATATGATTTTGCATTTGTACCTGGTGTGTAGTTATAAATAGCATATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTTGCATTTGTACCTGGTGTGTAGTTATAAATAGCATATATGA  400

seq1  TTATAATCATATTTATTATTATAAATAACACTAACACACATTATTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCATATTTATTATTATAAATAACACTAACACACATTATTGGCCT  450

seq1  ATTATAAAATTTCCTCTGAAAACTTTCCCAGTCTCTTTTATGCAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATTTCCTCTGAAAACTTTCCCAGTCTCTTTTATGCAGTATTT  500

seq1  AAAATATAATTCCATATTATAATTAAATGAGTATTTCTCTTCAGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATTCCATATTATAATTAAATGAGTATTTCTCTTCAGGAAGAA  550

seq1  AAAAATTAATATTAAACTAATAAATTATGTGACTATAGAAACCCTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATATTAAACTAATAAATTATGTGACTATAGAAACCCTGTCAA  600

seq1  TATTAGGATAATCAATTGTATAATAACTCAGATTCAAA-GGAACACGGCT  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTAGGATAATCAATTGTATAATAACTCAGATTCAAAGGGAACACGGCT  650

seq1  ATATATAAATTGTGATTCACATG-AAGACTGTTGACTTGTTCAAACAAAG  698
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATATATAAATTGTGATTCACATGAAAGACTGTTGACTTGTTCAAACAAAG  700

seq1  TTATTCTGCTTGGATCTTCTATAAGTAT-AATTATGTAATTAAGTTTCAC  747
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTCTGCTTGGATCTTCTATAAGTATAAATTATGTAATTAAGTTTCAC  750

seq1  TCACACTGTCATTACATAATAACACAATTCTAGACATTATCTCACTGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTCATTACATAATAACACAATTCTAGACATTATCTCACTGTAT  800

seq1  ATCCTTAGGTATGTAGTGAGTCAGATATGTGACAAATACAATTACTTCA-  846
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCTTAGGTATGTAGTGAGTCAGATATGTGACAAATACAATTACTTCAT  850

seq1  TTTTAAGGTCCAGGAAACATAGATTTAATGAGATTAAGTATCTTAACCCT  896
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTCCA-GAAACATAGATTTAATGAGATTAAGTATCTTAACCCT  899

seq1  ATGAACCAAATGCCTGTTAGAAGTCAGTCCTCTACCCCCTTTTCAACCAC  946
      |||||||||   |||||||||||||||||||||||||||||||||| |||
seq2  ATGAACCAATGCCCTGTTAGAAGTCAGTCCTCTACCCCCTTTTCAA-CAC  948

seq1  TAATACAGTGGCTCTCTGCATAGGCTTATGTCAAAAGCTTTGTGGGCTAT  996
      | ||||||||  |||||||||| |||||||||||||||||||||||||| 
seq2  T-ATACAGTGCTTCTCTGCATA-GCTTATGTCAAAAGCTTTGTGGGCTA-  995

seq1  TTCTAGAATTATAAACTCCTAAGCTCTATGTTAAACCTGAGATATTAAAA  1046
      |||||||||||| |||| |||||||||||| ||||||||||||||| |||
seq2  TTCTAGAATTAT-AACT-CTAAGCTCTATG-TAAACCTGAGATATT-AAA  1041

seq1  CTCTACCCAACCAGACAAACAT  1068
      ||||  |||||| |||||||||
seq2  CTCTTACCAACC-GACAAACAT  1062