BAC Information

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BAC

Clone NameB6Ng01-151K06
Chromosome5 (Build37)
Map Location 81,732,898 - 81,863,862
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151K06.bB6Ng01-151K06.g
ACCDH947410DH947411
length1951,095
definitionDH947410|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K06, 5' end.DH947411|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,863,669 - 81,863,862)(81,732,898 - 81,734,005)
sequence
tccattctgtgtcctaagataatcgtgatttcagtggatgacatgttatt
tcagtaattttttttttcagttaagatattctctactgagtttccattat
tttccttaaaatactgatgattaaaacagaagtcccaataacaattgtat
atatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcatatttttgtctgagttttaaatgatcatttttgcttttcaaag
atctctcaaaattctgaaaaaattttgggaatctatgagttcatttggta
tgtgagaattggacttaccgacttcatacactttacctctgagtgacctc
ctgaccccatatttttagttctaacgagcaaaggatttatactgagtgtt
gtgtatataatgtgacatccatcctttttcattttaaattatctgatggt
tgaaaattgaattattttccataatatttacacagtttattggtgaagct
ttagtttaaaactagttgctttgatttatggttaaaaatatcaatggcga
cagatctttatcttactcagattctcttggaaataatctccatcctggag
ctttgtaggatttcaagagaggttaactcaagggcatttccacgagaaag
tgatcctgtagaaaatatcagtctattttgtggatgaaggatgtactgcc
ctaaagccccaaatagcaatatccattaaattcacatttgtatctactat
tgataaacatttactagaacataacacagtcagaaagacaattaaatcgg
actttttttttttcaagaaaagtcctcattcacattgccatcctagctga
tttgtttcccaacaaaaataagtgcaattatttaaaatgtatttatggag
ctaggcgacttttatccaaacataccatcccattgtttggtaaccagttc
aaaaatgttgacttttggcatttctttgcccagtagatgcttaatgtaac
tttaaaattaattctaacaataaaatcacttgaaataaatgaaataaaaa
tgaactttggaagttcattgaattttgctatcttattgtgatctctctgg
agctaatcaagcttactgggaaaaatgaaacactaaaaataccagccaaa
tgccatacttttctcatattccctccacttcccaatttaatgattttttc
cggggtcttttaccatcctggctctttctttgatattatcttctgaatta
ttatttcttactttgaaaattattgtcattacagtgatatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81863669_81863862
seq2: B6Ng01-151K06.b_50_244 (reverse)

seq1  CACACACACACACACACACACACACACACATATATATATATATATATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATATATATATATATATACA  50

seq1  ATTGTTATTGGGACTTCTGTTTTAATCATCAGTATTTTAAGGAAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATTGGGACTTCTGTTTTAATCATCAGTATTTTAAGGAAAATAAT  100

seq1  GGAAACTCAGTAGAGAATATCTTAACTGAAAAAAAAAATTACTGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCAGTAGAGAATATCTTAACTGAAAAAAAAAATTACTGAAATAA  150

seq1  CATGTCATCCACTGAAATCAC-ATTATCTTAGGACACAGAATGGA  194
      ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGTCATCCACTGAAATCACGATTATCTTAGGACACAGAATGGA  195

seq1: chr5_81732898_81734005
seq2: B6Ng01-151K06.g_66_1160

seq1  GAATTCATATTTTTGTCTGAGTTTTAAATGATCATTTTTGCTTTTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTTTGTCTGAGTTTTAAATGATCATTTTTGCTTTTCAAAG  50

seq1  ATCTCTCAAAATTCTGAAAAAATTTTGGGAATCTATGAGTTCATTTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCAAAATTCTGAAAAAATTTTGGGAATCTATGAGTTCATTTGGTA  100

seq1  TGTGAGAATTGGACTTACCGACTTCATACACTTTACCTCTGAGTGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATTGGACTTACCGACTTCATACACTTTACCTCTGAGTGACCTC  150

seq1  CTGACCCCATATTTTTAGTTCTAACGAGCAAAGGATTTATACTGAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCATATTTTTAGTTCTAACGAGCAAAGGATTTATACTGAGTGTT  200

seq1  GTGTATATAATGTGACATCCATCCTTTTTCATTTTAAATTATCTGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATAATGTGACATCCATCCTTTTTCATTTTAAATTATCTGATGGT  250

seq1  TGAAAATTGAATTATTTTCCATAATATTTACACAGTTTATTGGTGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTGAATTATTTTCCATAATATTTACACAGTTTATTGGTGAAGCT  300

seq1  TTAGTTTAAAACTAGTTGCTTTGATTTATGGTTAAAAATATCAATGGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAAAACTAGTTGCTTTGATTTATGGTTAAAAATATCAATGGCGA  350

seq1  CAGATCTTTATCTTACTCAGATTCTCTTGGAAATAATCTCCATCCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTTATCTTACTCAGATTCTCTTGGAAATAATCTCCATCCTGGAG  400

seq1  CTTTGTAGGATTTCAAGAGAGGTTAACTCAAGGGCATTTCCACGAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGGATTTCAAGAGAGGTTAACTCAAGGGCATTTCCACGAGAAAG  450

seq1  TGATCCTGTAGAAAATATCAGTCTATTTTGTGGATGAAGGATGTACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGTAGAAAATATCAGTCTATTTTGTGGATGAAGGATGTACTGCC  500

seq1  CTAAAGCCCCAAATAGCAATATCCATTAAATTCACATTTGTATCTACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCCCCAAATAGCAATATCCATTAAATTCACATTTGTATCTACTAT  550

seq1  TGATAAACATTTACTAGAACATAACACAGTCAGAAAGACAATTAAATCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACATTTACTAGAACATAACACAGTCAGAAAGACAATTAAATCGG  600

seq1  ACTTTTTTTTTTTCAAGAAAAGTCCTCATTCACATTGCCATCCTAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTTCAAGAAAAGTCCTCATTCACATTGCCATCCTAGCTGA  650

seq1  TTTGTTTCCCAACAAAAATAAGTGCAATTATTTAAAATGTATTTATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCCAACAAAAATAAGTGCAATTATTTAAAATGTATTTATGGAG  700

seq1  CTAGGCGACTTTTATCCAAACATACCATCCCATTGTTTGGTAACCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGACTTTTATCCAAACATACCATCCCATTGTTTGGTAACCAGTTC  750

seq1  AAAAATGTTGAC-TTTGGCATTTCTTTGCCCAGTAGATGCTTAATGTAAC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTGACTTTTGGCATTTCTTTGCCCAGTAGATGCTTAATGTAAC  800

seq1  TTTAAAATTAATTCTAACAATAAAATCACTTGAAAATAAATGAAATAAAA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAAAATTAATTCTAACAATAAAATCACTTG-AAATAAATGAAATAAAA  849

seq1  ATGAAC-TTGGAAGTTCATTGAATTTTGCTATCTTATTGTGATCTCTCTG  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTGGAAGTTCATTGAATTTTGCTATCTTATTGTGATCTCTCTG  899

seq1  GAGCTAATCAGAGCTTACTGGGAAAAATGAAAACACTAAAAATACCAGCC  948
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GAGCTAATCA-AGCTTACTGGGAAAAATG-AAACACTAAAAATACCAGCC  947

seq1  AAAATGCCATAACTTTCTTCATATTCCCTCCACCTTCCCAATTTAATGAT  998
       ||||||||| |||||  |||||||||||||| |||||||||||||||||
seq2  -AAATGCCAT-ACTTTTCTCATATTCCCTCCA-CTTCCCAATTTAATGAT  994

seq1  TTTTTCCCGGGTCTTTTTACCCATCCTTGGCTCTTCTTTTTGATATTATC  1048
      ||||||| |||||||||   |||||| |||||||| | ||||||||||||
seq2  TTTTTCCGGGGTCTTTT--ACCATCC-TGGCTCTT-TCTTTGATATTATC  1040

seq1  TTCTGATTTATTATTTTCTTTAACTCTGAAAAAATACTGTCAATAACAGT  1098
      |||||| |||||| ||||||  ||| || |||| || |||| || |||||
seq2  TTCTGAATTATTA-TTTCTT--ACTTTG-AAAATTATTGTC-ATTACAGT  1085

seq1  GATATTTCTT  1108
      ||||||||||
seq2  GATATTTCTT  1095