BAC Information

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BAC

Clone NameB6Ng01-152N07
Chromosome5 (Build37)
Map Location 96,222,178 - 96,325,165
singlet/doubletdoublet
Overlap geneLOC665943, LOC433921
Upstream geneLOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209
Downstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N07.bB6Ng01-152N07.g
ACCDH948307DH948308
length9611,024
definitionDH948307|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N07, 5' end.DH948308|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,324,596 - 96,325,165)(96,222,178 - 96,223,211)
sequence
gaattcaaaattcttaagtctatctcatcagatattctcactccaattct
caaagactttcttccatagtagatccagagctacttgtgcaagattctta
acataactaggaacctagttttttctgaagttctatgcctctaatattaa
cttctgtacccagtctttacctggctatagtgctataggctgggctgaga
caaatgaagacctccacaatacaaaatttaggggaggcatatcttcagaa
tcacacaagtactgatcttgtagtggcttaaccctaaagcctctaaaaca
ttgttcttcaggtatctcattctctgtaacttacctttgccccctgtgta
gctatcctggcttctagatggaaagatctttcaaaatgtcaaggaagggc
aagggggagagcttagtcaaaaagtggcttgccttataagcataaggacc
tgggtctgatacttggaacttatatttaaaagagaaaagaaaagtttcat
aatactttttaattagatattttttaatttacatttcaaatgctatcccg
aaaattccccatactctcccctccccctccctgctcccctacccacccac
tccaacttcttgaccctggcattcccctgtactggggcatataaagtttg
caagaccaaggggcctctcttctcaatgatggtcgactaggccatcttct
gctacatatgcatcttgagacacgaactctgggggtactggttagttcat
atagttgttccacctatgggttgcagaccccattcagctccttgggtact
ttctctagctcctccattgggtgccctgtgttctatcctataggtgactg
tgagcatccacttctgtatttgccaagcactggcatagcctcatacgaga
cagctatatcagggtccttttagcaaatcttactggcatatgcaatagtg
tctgggtttgg
gaattcacgtgttgtagaggattgtggtccttggtctcagtccaatggtt
gcctgtgaatgcctgcaattgtcttaggtgctattagaacctctcagagg
acagccaaatcaggctcctttatgtaagcacatcttgtcatcaacaatac
tataggtttttgatgtctgctgatgggatggatctaaggatgcctgttcc
tggatggccctttcttcagtctctgctccagtttttgtccctgttcttcc
attagacaggaacaagtctaggttaaaaattttgagatgtgtgagtggca
ccttccctcaactggaagccatgcctagccactggaggtggtctcttcag
gttctgtctcccctgaatgacatatttcatcttgaattttattctttgat
tgcttggttatttattgtttgattgatttattctcctttttgctcttgac
cttcttggttagaatcctattctgagacacatggttgttctattgctagg
gataatttagaattgcaactcaagagggatcctcttgccttggccttcct
gctggaaggattattatgtgaggcacatcacctggttatgttttcctcat
ttgtgaccagcatggttcagagggaaattcacctgggagccatagtctgt
ccttgaaaatacatgcaagaaaccataaaataccattgtaagaggacctg
acaaatacctttgtgcagaactttttggagagtccttgtaggagtttggc
aggaatttgatattggcctagaacagagaagtaggctcagctaagaatat
taacttttgctgggggtggtggcacaaggcttatcccagcgctcaggagg
cagaggcagaagattctgagtggaggccagcctggtctacaagtgagttc
agacagccagggctatacagagaaacctgtcttgagcttccacccccctc
ccagggaaaaatattacttttgggcttatacaaagttcatgaaacttcag
cagaggatgtagcattgagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96324596_96325165
seq2: B6Ng01-152N07.b_49_618 (reverse)

seq1  GGGAGAGTATGGGGAATTTTCGGGATAGCATTTGAAATGTAAATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTATGGGGAATTTTCGGGATAGCATTTGAAATGTAAATTAAAAA  50

seq1  ATATCTAATTAAAAAGTATTATGAAACTTTTCTTTTCTCTTTTAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATTAAAAAGTATTATGAAACTTTTCTTTTCTCTTTTAAATATA  100

seq1  AGTTCCAAGTATCAGACCCAGGTCCTTATGCTTATAAGGCAAGCCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGTATCAGACCCAGGTCCTTATGCTTATAAGGCAAGCCACTTT  150

seq1  TTGACTAAGCTCTCCCCCTTGCCCTTCCTTGACATTTTGAAAGATCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAGCTCTCCCCCTTGCCCTTCCTTGACATTTTGAAAGATCTTTC  200

seq1  CATCTAGAAGCCAGGATAGCTACACAGGGGGCAAAGGTAAGTTACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGAAGCCAGGATAGCTACACAGGGGGCAAAGGTAAGTTACAGAGA  250

seq1  ATGAGATACCTGAAGAACAATGTTTTAGAGGCTTTAGGGTTAAGCCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATACCTGAAGAACAATGTTTTAGAGGCTTTAGGGTTAAGCCACTA  300

seq1  CAAGATCAGTACTTGTGTGATTCTGAAGATATGCCTCCCCTAAATTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAGTACTTGTGTGATTCTGAAGATATGCCTCCCCTAAATTTTGT  350

seq1  ATTGTGGAGGTCTTCATTTGTCTCAGCCCAGCCTATAGCACTATAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAGGTCTTCATTTGTCTCAGCCCAGCCTATAGCACTATAGCCAG  400

seq1  GTAAAGACTGGGTACAGAAGTTAATATTAGAGGCATAGAACTTCAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACTGGGTACAGAAGTTAATATTAGAGGCATAGAACTTCAGAAAA  450

seq1  AACTAGGTTCCTAGTTATGTTAAGAATCTTGCACAAGTAGCTCTGGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTTCCTAGTTATGTTAAGAATCTTGCACAAGTAGCTCTGGATCT  500

seq1  ACTATGGAAGAAAGTCTTTGAGAATTGGAGTGAGAATATCTGATGAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAAGAAAGTCTTTGAGAATTGGAGTGAGAATATCTGATGAGATA  550

seq1  GACTTAAGAATTTTGAATTC  570
      ||||||||||||||||||||
seq2  GACTTAAGAATTTTGAATTC  570

seq1: chr5_96222178_96223211
seq2: B6Ng01-152N07.g_69_1092

seq1  GAATTCACGTGTTGTAGAGGATTGTGGTCCTTGGTCTCAGTCCAATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGTTGTAGAGGATTGTGGTCCTTGGTCTCAGTCCAATGGTT  50

seq1  GCCTGTGAATGCCTGCAATTGTCTTAGGTGCTATTAGAACCTCTCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAATGCCTGCAATTGTCTTAGGTGCTATTAGAACCTCTCAGAGG  100

seq1  ACAGCCAAATCAGGCTCCTTTATGTAAGCACATCTTGTCATCAACAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAATCAGGCTCCTTTATGTAAGCACATCTTGTCATCAACAATAC  150

seq1  TATAGGTTTTTGATGTCTGCTGATGGGATGGATCTAAGGATGCCTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTTTTGATGTCTGCTGATGGGATGGATCTAAGGATGCCTGTTCC  200

seq1  TGGATGGCCCTTTCTTCAGTCTCTGCTCCAGTTTTTGTCCCTGTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCCCTTTCTTCAGTCTCTGCTCCAGTTTTTGTCCCTGTTCTTCC  250

seq1  ATTAGACAGGAACAAGTCTAGGTTAAAAATTTTGAGATGTGTGAGTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAGGAACAAGTCTAGGTTAAAAATTTTGAGATGTGTGAGTGGCA  300

seq1  CCTTCCCTCAACTGGAAGCCATGCCTAGCCACTGGAGGTGGTCTCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCAACTGGAAGCCATGCCTAGCCACTGGAGGTGGTCTCTTCAG  350

seq1  GTTCTGTCTCCCCTGAATGACATATTTCATCTTGAATTTTATTCTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTCCCCTGAATGACATATTTCATCTTGAATTTTATTCTTTGAT  400

seq1  TGCTTGGTTATTTATTGTTTGATTGATTTATTCTCCTTTTTGCTCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTTATTTATTGTTTGATTGATTTATTCTCCTTTTTGCTCTTGAC  450

seq1  CTTCTTGGTTAGAATCCTATTCTGAGACACATGGTTGTTCTATTGCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGTTAGAATCCTATTCTGAGACACATGGTTGTTCTATTGCTAGG  500

seq1  GATAATTTAGAATTGCAACTCAAGAGGGATCCTCTTGCCTTGGCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAGAATTGCAACTCAAGAGGGATCCTCTTGCCTTGGCCTTCCT  550

seq1  GCTGGAAGGATTATTATGTGAGGCACATCACCTGGTTATGTTTTCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGGATTATTATGTGAGGCACATCACCTGGTTATGTTTTCCTCAT  600

seq1  TTGTGACCAGCATGGTTCAGAGGGAAATTCACCTGGGAGCCATAGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCAGCATGGTTCAGAGGGAAATTCACCTGGGAGCCATAGTCTGT  650

seq1  CCTTGAAAATACATGCAAGAAACCATAAAATACCATTGTAAGAGGACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAATACATGCAAGAAACCATAAAATACCATTGTAAGAGGACCTG  700

seq1  ACAAATACCTTTGTGCAGAAC-TTTTGGAGAGTCCTTGTAGGAGTTTGGC  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAAATACCTTTGTGCAGAACTTTTTGGAGAGTCCTTGTAGGAGTTTGGC  750

seq1  AGGAATTTGATATTGGCCTAGAACAGAGAAGTAGGCTCAGCTAAGAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGATATTGGCCTAGAACAGAGAAGTAGGCTCAGCTAAGAATAT  800

seq1  TAACTTTTGCTGGGGGTGGTGGCACAAGGCTTTAATCCCAGCGCTCAGGA  849
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TAACTTTTGCTGGGGGTGGTGGCACAAGGCTT--ATCCCAGCGCTCAGGA  848

seq1  GGCAGAGGCAGAAAGATTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTG  899
      ||||||||||| ||||||||||| |||||||||||||||||||| |||||
seq2  GGCAGAGGCAG-AAGATTCTGAG-TGGAGGCCAGCCTGGTCTAC-AAGTG  895

seq1  AGTTCCAGAACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAGC-TCCA  948
      |||| ||| ||||||||||||||||||||||| |||||||||||| ||||
seq2  AGTT-CAG-ACAGCCAGGGCTATACAGAGAAA-CCTGTCTTGAGCTTCCA  942

seq1  CCCCCCCCCCAGGGGAAAAATATTTACTTTTGGGCTAATACAAAGTTCAA  998
      |||||| |||| |||||||||| ||||||||||||| ||||||||||| |
seq2  CCCCCCTCCCA-GGGAAAAATA-TTACTTTTGGGCTTATACAAAGTTC-A  989

seq1  GGAAAACTCAGCAGAGGAATGTAGCATTGAGTTTTT  1034
       ||||  |||||||||| ||||||||||||||||||
seq2  TGAAACTTCAGCAGAGG-ATGTAGCATTGAGTTTTT  1024