BAC Information

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BAC

Clone NameB6Ng01-155F20
Chromosome5 (Build37)
Map Location 91,904,315 - 91,997,201
singlet/doubletdoublet
Overlap gene9130213B05Rik
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155F20.bB6Ng01-155F20.g
ACCDH950169DH950170
length1,1411,093
definitionDH950169|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F20, 5' end.DH950170|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,996,044 - 91,997,201)(91,904,315 - 91,905,417)
sequence
gaattctatacttctagcagatgataagggaagaagtaggttgtccaaat
cctagggaacaggacttcctacttagcttggactctttttgaaggcaagg
ataaagatgaggggcttgactctctatcagaatccagagtacagtgtctt
caactttacccttcaactatactttattagccccccccctctctcctctc
ttcctcttcatctctctccttttccctttttctctgtctctctttttgtc
tctctttcctgtctctctgtctctatctctctctttctgttgctgtctct
gtctctctattggtcccctctcttgttcttggtggttttcaaggtgccag
accctctgtggaggaaacagaaatacctgaaaagcctatttttatttaat
aggggaaatgtgactttcttcaacatattcttctgtgttgcctagatggc
tggtgtggtagtttgaaagaaaatgtttcccataagcttttagggagtgg
cgttattatgaggtatggccttggagtaagtgtggttttgttgaaggagg
tacatgagggggtggcctttgaggtctcagaagctcaagccagttcactt
cctgctgctgctgaccctgatgtaaaactctccttctccattaccatgtc
tgcctgcacgctgtcatgtttctcaccatgacaataatgaactaaaactc
tgaaactgtaagccagcctccaattaaatgtttctttataagagttctgt
ggtcatggtgtctcttcacagcaataaaaccctaaggcagaaagtttgat
ttctttttaaaatttcaagtttatgatccatgtaatatgggtttaaaaac
aaattgataaacaaaccaatgtagaattaagaaaaaaccattgaaattag
ccccccaaacccagaagtattaagcaaagctcctaaagcacattaaagta
gaagtataatttttagtatctaaaatgtgatgtaattatagagatacatt
cttacatggttttgcttaatctttagatacactgtgcagtactgttgtat
agaactgtctctaattacacacttcctccttagagggagagaggtctctt
ctcgtctcagaaaaggtagaacttcaaggctcaggacaatc
gaattcaaagagatagttactgacaagacattgtttcaagtgtgtggatg
cagcaattattttaaacgcgcaccaactcccatttctcgcttccttcata
ttccggtacaaaggagcctttttctaaaaggcgagctctggttgctatga
atatacactgacaagctgcatagagaatgtcttagaaaataggtcaggat
aacagaatgcacatgcttcacgacacgcagaaggcagtcatacagcagga
tgtgaatgcacaccttcactctcagcatttgggaggtagaggcaagagcc
agcctgggctacatgaaacccttgtctaaatatatatatataatgatata
tattatgatatatatatcagtaataagtatgtgtttattacatgtcattt
tgttccgtaactttgaaaatattgccatgtccctctgaggtcaaaagagg
ggaaagtgtacctttaaaaatgaggcacaattccttgataccctgcttag
tcaggtagaaacctcctatcctggggctgtgagaagaacagtatcacttt
gcactggggacttagaaccacatgactaagcaaaggatgccactatcatt
cccccctctccttctaatttggaaacccaggtcaggacagctaaaagcga
aatgatctggagagtgttcactacagggggagggagaggttgcccaggtt
tggcagattgtcatcctggtatttattgccggaggagcagcaactaagga
aatgttgcacagagctagactgactatgacagatctcttcagctcttatt
tggtgagatcataaacacaggtattcactggggttggattttttttaaga
attaaaaataagttgctaattaagtacatgcaaattatgtggattgaggg
ccatacctgagggctattaatgcttcatttttaaattagatgagactact
taaagtgaaatactaagcttgaacaggccctactgctcacttgaagcttt
gcatgcatttttctggaggtcaaaacaaatctagggtaacattaatcctt
catcttacagtttacactccattccggtggttattttacttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91996044_91997201
seq2: B6Ng01-155F20.b_45_1185 (reverse)

seq1  GATTGTTCCTGAGCCTTGTAAGTTTTCTACATTTTCTGAGACGAGAAGAG  50
      ||||| |||||||||||| |||  |||||| |||||||||||||||||||
seq2  GATTG-TCCTGAGCCTTG-AAG--TTCTACCTTTTCTGAGACGAGAAGAG  46

seq1  ACCCTCTCCTCCCTCTAA-GAGGGAGTGTTGTGATTTAGAGACAGTTTCT  99
      | ||||| |||||||||| |||| |||| ||| | |||||||||| ||||
seq2  A-CCTCT-CTCCCTCTAAGGAGGAAGTG-TGT-AATTAGAGACAG-TTCT  91

seq1  ATACAACAGTACTGCACAGTGTTATTCTAAAGATTAAGCAAAACCATGTA  149
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  ATACAACAGTACTGCACAGTGT--ATCTAAAGATTAAGCAAAACCATGTA  139

seq1  AGAATGTATTCTCTATAATTACATCACATTTTTAGATACTAAAAATTATT  199
      |||||||| ||||||||||||||||||| ||||||||||||||||||| |
seq2  AGAATGTA-TCTCTATAATTACATCACA-TTTTAGATACTAAAAATTA-T  186

seq1  ACTTCCTACTTTAATGTTGCTTTTAGGAGCTTTGCTTAATACTTCTTGGG  249
      |||| ||||||||||| ||| |||||||||||||||||||||||| ||||
seq2  ACTT-CTACTTTAATG-TGC-TTTAGGAGCTTTGCTTAATACTTC-TGGG  232

seq1  TTTGGGGGGCTAATTTCAATGGTTTTTTCTTAATTCTACATTGGTTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGCTAATTTCAATGGTTTTTTCTTAATTCTACATTGGTTTGTT  282

seq1  TATCAATTTGTTTTTAAACCCATATTACATGGATCATAAACTTGAAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTTGTTTTTAAACCCATATTACATGGATCATAAACTTGAAATTT  332

seq1  TAAAAAGAAATCAAACTTTCTGCCTTAGGGTTTTATTGCTGTGAAGAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAATCAAACTTTCTGCCTTAGGGTTTTATTGCTGTGAAGAGAC  382

seq1  ACCATGACCACAGAACTCTTATAAAGAAACATTTAATTGGAGGCTGGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCACAGAACTCTTATAAAGAAACATTTAATTGGAGGCTGGCTT  432

seq1  ACAGTTTCAGAGTTTTAGTTCATTATTGTCATGGTGAGAAACATGACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCAGAGTTTTAGTTCATTATTGTCATGGTGAGAAACATGACAGC  482

seq1  GTGCAGGCAGACATGGTAATGGAGAAGGAGAGTTTTACATCAGGGTCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCAGACATGGTAATGGAGAAGGAGAGTTTTACATCAGGGTCAGC  532

seq1  AGCAGCAGGAAGTGAACTGGCTTGAGCTTCTGAGACCTCAAAGGCCACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGGAAGTGAACTGGCTTGAGCTTCTGAGACCTCAAAGGCCACCC  582

seq1  CCTCATGTACCTCCTTCAACAAAACCACACTTACTCCAAGGCCATACCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTACCTCCTTCAACAAAACCACACTTACTCCAAGGCCATACCTC  632

seq1  ATAATAACGCCACTCCCTAAAAGCTTATGGGAAACATTTTCTTTCAAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACGCCACTCCCTAAAAGCTTATGGGAAACATTTTCTTTCAAACT  682

seq1  ACCACACCAGCCATCTAGGCAACACAGAAGAATATGTTGAAGAAAGTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCAGCCATCTAGGCAACACAGAAGAATATGTTGAAGAAAGTCAC  732

seq1  ATTTCCCCTATTAAATAAAAATAGGCTTTTCAGGTATTTCTGTTTCCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTATTAAATAAAAATAGGCTTTTCAGGTATTTCTGTTTCCTCC  782

seq1  ACAGAGGGTCTGGCACCTTGAAAACCACCAAGAACAAGAGAGGGGACCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGTCTGGCACCTTGAAAACCACCAAGAACAAGAGAGGGGACCAA  832

seq1  TAGAGAGACAGAGACAGCAACAGAAAGAGAGAGATAGAGACAGAGAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGACAGAGACAGCAACAGAAAGAGAGAGATAGAGACAGAGAGACA  882

seq1  GGAAAGAGAGACAAAAAGAGAGACAGAGAAAAAGGGAAAAGGAGAGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGAGACAAAAAGAGAGACAGAGAAAAAGGGAAAAGGAGAGAGAT  932

seq1  GAAGAGGAAGAGAGGAGAGAGGGGGGGGGCTAATAAAGTATAGTTGAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGAGAGGAGAGAGGGGGGGGGCTAATAAAGTATAGTTGAAGG  982

seq1  GTAAAGTTGAAGACACTGTACTCTGGATTCTGATAGAGAGTCAAGCCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTGAAGACACTGTACTCTGGATTCTGATAGAGAGTCAAGCCCCT  1032

seq1  CATCTTTATCCTTGCCTTCAAAAAGAGTCCAAGCTAAGTAGGAAGTCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATCCTTGCCTTCAAAAAGAGTCCAAGCTAAGTAGGAAGTCCTG  1082

seq1  TTCCCTAGGATTTGGACAACCTACTTCTTCCCTTATCATCTGCTAGAAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGGATTTGGACAACCTACTTCTTCCCTTATCATCTGCTAGAAGT  1132

seq1  ATAGAATTC  1158
      |||||||||
seq2  ATAGAATTC  1141

seq1: chr5_91904315_91905417
seq2: B6Ng01-155F20.g_68_1160

seq1  GAATTCAAAGAGATAGTTACTGACAAGACATTGTTTCAAGTGTGTGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGATAGTTACTGACAAGACATTGTTTCAAGTGTGTGGATG  50

seq1  CAGCAATTATTTTAAACGCGCACCAACTCCCATTTCTCGCTTCCTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTATTTTAAACGCGCACCAACTCCCATTTCTCGCTTCCTTCATA  100

seq1  TTCCGGTACAAAGGAGCCTTTTTCTAAAAGGCGAGCTCTGGTTGCTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGTACAAAGGAGCCTTTTTCTAAAAGGCGAGCTCTGGTTGCTATGA  150

seq1  ATATACACTGACAAGCTGCATAGAGAATGTCTTAGAAAATAGGTCAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTGACAAGCTGCATAGAGAATGTCTTAGAAAATAGGTCAGGAT  200

seq1  AACAGAATGCACATGCTTCACGACACGCAGAAGGCAGTCATACAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATGCACATGCTTCACGACACGCAGAAGGCAGTCATACAGCAGGA  250

seq1  TGTGAATGCACACCTTCACTCTCAGCATTTGGGAGGTAGAGGCAAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCACACCTTCACTCTCAGCATTTGGGAGGTAGAGGCAAGAGCC  300

seq1  AGCCTGGGCTACATGAAACCCTTGTCTAAATATATATATATAATGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTACATGAAACCCTTGTCTAAATATATATATATAATGATATA  350

seq1  TATTATGATATATATATCAGTAATAAGTATGTGTTTATTACATGTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATATATATATCAGTAATAAGTATGTGTTTATTACATGTCATTT  400

seq1  TGTTCCGTAACTTTGAAAATATTGCCATGTCCCTCTGAGGTCAAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGTAACTTTGAAAATATTGCCATGTCCCTCTGAGGTCAAAAGAGG  450

seq1  GGAAAGTGTACCTTTAAAAATGAGGCACAATTCCTTGATACCCTGCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGTACCTTTAAAAATGAGGCACAATTCCTTGATACCCTGCTTAG  500

seq1  TCAGGTAGAAACCTCCTATCCTGGGGCTGTGAGAAGAACAGTATCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGAAACCTCCTATCCTGGGGCTGTGAGAAGAACAGTATCACTTT  550

seq1  GCACTGGGGACTTAGAACCACATGACTAAGCAAAGGATGCCACTATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGACTTAGAACCACATGACTAAGCAAAGGATGCCACTATCATT  600

seq1  CCCCCCTCTCCTTCTAATTTGGAAACCCAGGTCAGGACAGCTAAAAGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCTCCTTCTAATTTGGAAACCCAGGTCAGGACAGCTAAAAGCGA  650

seq1  AATGATCTGGAGAGTGTTCACTACAGGGGGAGGGAGAGGTTGCCCAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTGGAGAGTGTTCACTACAGGGGGAGGGAGAGGTTGCCCAGGTT  700

seq1  TGGCAGATTGTCATCCTGGTATTTATTGCCGGAGGAGCAGCAACTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTGTCATCCTGGTATTTATTGCCGGAGGAGCAGCAACTAAGGA  750

seq1  AATGTTGCACAGAGCTAGACTGACTATGACAGATCTCTTCAGCTCTTAAT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTTGCACAGAGCTAGACTGACTATGACAGATCTCTTCAGCTCTTATT  800

seq1  TGGTGAGATCATAAACACAGGTATTCACTGGGGTTGGATTTTTTTTTAAG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGAGATCATAAACACAGGTATTCACTGGGGTTGGA-TTTTTTTTAAG  849

seq1  AATTAAAAATAAGTTGCTAATTAAGTACATGCAAATTATGT-GATTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTAAAAATAAGTTGCTAATTAAGTACATGCAAATTATGTGGATTGAGG  899

seq1  GCCATACCTGAGGGCTATTAATGCTTCATTTTTTAAATTAGATGAGAACT  949
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  GCCATACCTGAGGGCTATTAATGCTTCA-TTTTTAAATTAGATGAG-ACT  947

seq1  ACTTAAAGTGAAATAACTAAGCTTGAACAGGCCCTACTGCTCACCTTGAA  999
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  ACTTAAAGTGAAAT-ACTAAGCTTGAACAGGCCCTACTGCTCA-CTTGAA  995

seq1  GCTTTTGCATGCATTTTTCT-GAGGTCAAAACAAATCTAGAGGTAACATT  1048
      || ||||||||||||||||| ||||||||||||||||||| ||||||| |
seq2  GC-TTTGCATGCATTTTTCTGGAGGTCAAAACAAATCTAG-GGTAACA-T  1042

seq1  TAATCCTCCATTCTTACAGTTTACCACTCCATCCCCGTTGGTTATTTTAT  1098
      ||||||| || |||||||||||| ||||||||  ||| ||||||||||| 
seq2  TAATCCTTCA-TCTTACAGTTTA-CACTCCAT-TCCGGTGGTTATTTTA-  1088

seq1  CTTCG  1103
      |||||
seq2  CTTCG  1093