BAC Information

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BAC

Clone NameB6Ng01-156D03
Chromosome5 (Build37)
Map Location 11,199,242 - 11,257,559
singlet/doubletdoublet
Overlap geneLOC100042819, LOC667948
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC667942
Downstream geneEG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156D03.bB6Ng01-156D03.g
ACCDH950764DH950765
length1,1931,133
definitionDH950764|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D03, 5' end.DH950765|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,256,344 - 11,257,559)(11,199,242 - 11,200,396)
sequence
gaattcttcattcagaatacaagtccttcttttctactggaggaagcaga
agagtccatttctcatctccctcctgaccaagcttcaggttctgcctctc
tgctatgaagcattcatggacatgaggttgggcatagggacaatctggtg
gtacagcttcatagaacccacctcctataaaggatatgatgaggctgaca
ttgaagaccccagactgacaccacagggtttggagcagtgcatacctatt
gtaattggaactctctttgaaatcgatcaggtgatctctctgctcatttc
tcagctgaatgaggaggtgcagctctgtggtcagcctctctttttccttt
ttgaactccttcttacttaggtcaggtgcagtggatgatgtgtgtcttcg
agcccctttaggtagaagaataaaaaaaatactttcatgtgagaattcaa
agagtgtaggcagaccaccaaaagagagacaatgcctggaaactattgac
accagaaagagtttgttctgggcttgagatgcctccacatgggtctcagt
tctacaagtactctagagagaccaggagatgtaaacagccaggtgtttcc
tctgtctccctaaacatgcttattattaccagagagatgtctcccgaaac
aagcttattattaccagagagatgtctccctaaacatgcttattattacc
agagagatgtctccctaaacaagcttattattaccagagagacagcttac
tcaggatgattgtcaactgaacagagtgcaatttggcttcagagctatca
gtcccatggtttcacaagtcagatggtaaaatcacaagtactttagtgct
tggagatgctcagatctcctacccagttatgctaggcccaggacttgggc
ttcaaaagtcacgcagtgagagaacattgtcaaatactatcaattgcccc
tactgaaacaccaaagacccaagaagtagcataggatcccttctctgtct
ggtgtctccactctgacagtctgtggtacagtgtagaatgctgcccctca
cactgtgataagaaaggtaagttggactggtcatgacagatgtcgagtca
ttctgagaaactgagtcatgggctgggcacaattcctctattatctactc
caaatagcactgagttaaagcttgaagggaaatacagtcatgc
gaattcaaaaataatctgaaaaccgtaaagcagctttgctatggcttctt
taatgaacagtttccagtaaataaaaatgatctatgagttacacttctta
gatatctaagaatctgattgaagagagggatgcagcagcagagtgccata
aaaaggagactactcaaaagacaaaagaaagaaaacctcagacagccatg
ctaacaccctcatttggatgtgagatgattagaagataaacaatgaaaaa
aaaaaaaaggtcagcagaggtggatctcaattacttagaaaggataaaat
gcaataattataacaacaggctcatcaaaacaaatgtgaacccacaacaa
acaatggcctcctcagatcccttctatgcagtagagggtggaagttaaag
ttagcccacaggaaaaaagcacatagcacaacaaagacttatcacagctt
caaactcaattgttcttcatgaattgtaaaaatgttcagtacagactaaa
caagaatgtgtttaaatttgtatcatcagtttccttgaaaaaagaccttt
atggaagtatatgaaaggactttgtagaaaaatgtatttatgcagtaggc
agaaataagaaggatatctagaaatatctgtattatgtaagtacaggata
tagtcaatacataacaatgtttcagaacctagcattttgtgctatgagtt
ttaagaatgaaaggaaaagtttccaggtaatgtttctttcaaacaaatgc
ctgaggctaaggatctggactggggataaaccagcagcattcgttgcaca
tgtggtatctagggccacagaacttaagagattctgtgactatttaccta
gtatgccaaactcttacttcgagagtaaccacagattagattttcaaaga
atgcctagtgaagctgatatgaattgccagaatacagttttgacttatag
aatgtatatgcttctaattaggaaaaatagactgatatactctacaccac
cccacccaaatcatcaaatgagtgttttcacttctaggatgtagaagatg
cactcccctatactcagatgactgacagacttgcatgttatgtgtacaag
agcaggagaactgacgataaataggcctattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11256344_11257559
seq2: B6Ng01-156D03.b_45_1237 (reverse)

seq1  GCATGACTGTATTTCACTCTCAGGGCTCTTTAACTTCAGTGGCTATTTGG  50
      ||||||||||||||| || ||| |   ||||||| ||||| ||||||| |
seq2  GCATGACTGTATTTCCCT-TCAAG---CTTTAAC-TCAGT-GCTATTT-G  43

seq1  GAGTAGTATAATAGA-GAATTGTGCTCCAGCCCATGACCTCATGTTCTCA  99
      |||||| |||||||| ||||||||| ||||||||||| ||||  ||||||
seq2  GAGTAG-ATAATAGAGGAATTGTGC-CCAGCCCATGA-CTCAGTTTCTCA  90

seq1  GAATGACTCTGACATCCTGTCCATGACAGTTCCCACTTTACCTTTCTTAA  149
      ||||||||| ||||| |||| ||||||   ||| || ||||||||||| |
seq2  GAATGACTC-GACAT-CTGT-CATGACCAGTCCAAC-TTACCTTTCTT-A  135

seq1  TCACCAGTTGTGAGTGGCAGGCATTTCTACACTGTAACCACAGACCTGTC  199
      ||| ||| |||||| |||| ||| ||||||||||| |||||||| |||||
seq2  TCA-CAG-TGTGAGGGGCA-GCA-TTCTACACTGT-ACCACAGA-CTGTC  179

seq1  AGAGTGGAGACACCCAGACAGAGAAGGGATCCTATTGCTACTTCTTGGGT  249
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AGAGTGGAGACA-CCAGACAGAGAAGGGATCCTA-TGCTACTTCTTGGGT  227

seq1  CTTTGGTGTTTCAGTAGGGGCAATTGATAGTATTTTGACAATGTTCTCTC  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTGGTGTTTCAGTAGGGGCAATTGATAGTA-TTTGACAATGTTCTCTC  276

seq1  ACTGCGTGACTTTTGAAGCCCAAGTCCTGGGCCTAGCATAACTGGGTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTGACTTTTGAAGCCCAAGTCCTGGGCCTAGCATAACTGGGTAGG  326

seq1  AGATCTGAGCATCTCCAAGCACTAAAGTACTTGTGATTTTACCATCTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGCATCTCCAAGCACTAAAGTACTTGTGATTTTACCATCTGAC  376

seq1  TTGTGAAACCATGGGACTGATAGCTCTGAAGCCAAATTGCACTCTGTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAACCATGGGACTGATAGCTCTGAAGCCAAATTGCACTCTGTTCA  426

seq1  GTTGACAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAAGCTTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAAGCTTGTT  476

seq1  TAGGGAGACATCTCTCTGGTAATAATAAGCATGTTTAGGGAGACATCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGACATCTCTCTGGTAATAATAAGCATGTTTAGGGAGACATCTCT  526

seq1  CTGGTAATAATAAGCTTGTTTCGGGAGACATCTCTCTGGTAATAATAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATAATAAGCTTGTTTCGGGAGACATCTCTCTGGTAATAATAAGC  576

seq1  ATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCCTGGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCCTGGTCTC  626

seq1  TCTAGAGTACTTGTAGAACTGAGACCCATGTGGAGGCATCTCAAGCCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTACTTGTAGAACTGAGACCCATGTGGAGGCATCTCAAGCCCAG  676

seq1  AACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTCTCTTTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTCTCTTTTGG  726

seq1  TGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTTTTTTATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTTTTTTATTC  776

seq1  TTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACCTGACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACCTGACCTA  826

seq1  AGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAGAGCTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAGAGCTGCA  876

seq1  CCTCCTCATTCAGCTGAGAAATGAGCAGAGAGATCACCTGATCGATTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATTCAGCTGAGAAATGAGCAGAGAGATCACCTGATCGATTTCA  926

seq1  AAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCCTGTGGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCCTGTGGTGT  976

seq1  CAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAGGAGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAGGAGGTGG  1026

seq1  GTTCTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAACCTCATGTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAACCTCATGTCC  1076

seq1  ATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCAGGAGGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCAGGAGGGA  1126

seq1  GATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGGACTTGTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGGACTTGTA  1176

seq1  TTCTGAATGAAGAATTC  1216
      |||||||||||||||||
seq2  TTCTGAATGAAGAATTC  1193

seq1: chr5_11199242_11200396
seq2: B6Ng01-156D03.g_65_1197

seq1  GAATTCAAAAATAATCTGAAAACCGTAAAGCAGCTTTGCTATGGCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAATCTGAAAACCGTAAAGCAGCTTTGCTATGGCTTCTT  50

seq1  TAATGAACAGTTTCCAGTAAATAAAAATGATCTATGAGTTACACTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACAGTTTCCAGTAAATAAAAATGATCTATGAGTTACACTTCTTA  100

seq1  GATATCTAAGAATCTGATTGAAGAGAGGGATGCAGCAGCAGAGTGCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAAGAATCTGATTGAAGAGAGGGATGCAGCAGCAGAGTGCCATA  150

seq1  AAAAGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCATG  200

seq1  CTAACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAA  250

seq1  AAAAAAAAGGTCAGCAGAGGTGGATCTCAATTACTTAGAAAGGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGTCAGCAGAGGTGGATCTCAATTACTTAGAAAGGATAAAAT  300

seq1  GCAATAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAA  350

seq1  ACAATGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGTTAAAG  400

seq1  TTAGCCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTT  450

seq1  CAAACTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAA  500

seq1  CAAGAATGTGTTTAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTGTTTAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTT  550

seq1  ATGGAAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGC  600

seq1  AGAAATAAGAAGGATATCTAGAAATATCTGTATTATGTAAGTACAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGAAGGATATCTAGAAATATCTGTATTATGTAAGTACAGGATA  650

seq1  TAGTCAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTT  700

seq1  TTAAGAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGC  750

seq1  CTGAGGCTAAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTTGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTAAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTTGCACA  800

seq1  TGTGGTATCTAGGGCCACAGAACTTAAGAGATTCTGTGACTATTTACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATCTAGGGCCACAGAACTTAAGAGATTCTGTGACTATTTACCTA  850

seq1  GTATGCCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAAGA  900

seq1  ATGCCTAGTGAAGCTGATATGAATTGCCAGAATACAGTTTTGACTTATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGTGAAGCTGATATGAATTGCCAGAATACAGTTTTGACTTATAG  950

seq1  AATGTATATGCTTCTAATTAGGAAAAATAAGGACTGATATACCTCTACCA  1000
      |||||||||||||||||||||||||||||  |||||||||| ||||| ||
seq2  AATGTATATGCTTCTAATTAGGAAAAATA--GACTGATATA-CTCTA-CA  996

seq1  CCACCCCACCCAAATCAATCAAATGAGTGTTTTTCACTTCTAGGATGTAG  1050
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CCACCCCACCCAAATC-ATCAAATGAGTG-TTTTCACTTCTAGGATGTAG  1044

seq1  AAGATGCACTTCCCCCTATACCTCCAGATGAACTGGACAAGACTTTGCAT  1100
      ||||||||||  |||||||||   |||||| ||| ||| |||| ||||||
seq2  AAGATGCACT--CCCCTATAC--TCAGATG-ACT-GAC-AGAC-TTGCAT  1086

seq1  GTTATGTGTACCAAGAGCCAGGAGGAACTGAAAGGTATAAATAGGGCCCT  1150
      |||||||||| |||||| ||||| |||||||     |||||||||  |||
seq2  GTTATGTGTA-CAAGAG-CAGGA-GAACTGA---CGATAAATAGG--CCT  1128

seq1  ATTCA  1155
      |||||
seq2  ATTCA  1133