BAC Information

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BAC

Clone NameB6Ng01-157B12
Chromosome5 (Build37)
Map Location 135,874,773 - 136,024,278
singlet/doubletdoublet
Overlap geneHip1
Upstream geneGtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157B12.bB6Ng01-157B12.g
ACCDH951422DH951423
length1,1881,043
definitionDH951422|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B12, 5' end.DH951423|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,874,773 - 135,875,996)(136,023,253 - 136,024,278)
sequence
gaattcctgacctgtttttatctcctgagtgctgagggtcacaggtgtaa
gggttaccatatcccacctcaaatttggctttaccttctggggaccggtc
aacaaacacacttgtaactttctgtcatatacagaggtttcaagggtgca
ctgattggctgtcgtgtgtcctccagcctccctgctctgaggcacttgcg
gttcctacacagagggcatgactacggatacagagcatccttgccttcct
ctcttccctcacagcactttgccttggagcgaatctttattgctacatag
ctccttggctaagtccgtcatcctgtgctagcacaaagcttacggcccgt
cctgcttgggtctgctcacttccttcctcccctctcctttcatgtgcatg
agcctgtgctcgtgtgagcgagttcatgtgtatgcaaaagcacctctgac
acaggaccaaccctccttcactcagtggtagcagttgggatacccttcaa
ttgtgatgacacctctggcttatgtaaaaggtaaacttggtgggctgtgg
gctgacaccaaggtaggtgagtcagattcctcttgcctgaaggttgagaa
tgaaatttctatccactggccagtctggcgattcacactccccacactcc
cgacgcttgggagatggaggcagtggggtcagaagttcaaggccatcctt
gacgacatagttgagttgaggctagcctttgatacagaaacagaaggacc
ctgtttgtaaaacggaaagtgaggaagaaactaagacattcccagataaa
gaaaccaatggaatgttttgatagggcctcggaaactgcttttgctacaa
agccactgactcctctcttggcacccacaactgaagtaagtactcaatga
cctgtgacctggatttaataccacatggaagacggcagcaccaacctcgg
aaagttggcttctgacttccacatgtgtactttggcaccaaaggactctc
tctctctcctccctcctcaaacacacacacaacaacaatcacaacgattt
ctttctactttttaagtagaagcagcagctgactgtactcactgaactag
gcttgggaggcaagctgaagaccctctgttagagaagctctggtcacgag
ataccagtaacgccgtattaccgaaaaccgttttggga
gaattcagaatggccacaccagggtcagagtgttaggagcattgtctgct
ctgctggcgttcttcatcgaagtcattcccttgggtactgggggtggtag
gtcagttgacaaagcttacttaagtaagctcaaggccagaaagaactcct
gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
cactgactgcccttcccttctagaggtcctgagttcatgagttcaattcc
cagcaaccacatggtggctcacaaccatctgatctagtgccatcttctga
tgtgcaaaaaaaagatgggctggagagatgggctcagcagttatgaggac
ccaagtttggtagagggtggctcacaaccatctacaactccaaggaatct
gacaccccatctggcttctgcaggcacctccacacatatcacacacacac
acaccaccaccacccccaacacacatatcacacacacacataccacccca
acacacagtgccaaaacacactacacattccttccccctaaaacgcaatt
tatagatcatccccttaaataaatacagtctccggctaatcctcctatca
ctctggacctgtgaagcccctcttctcacatccccttggcacaagcttac
tcacatgactccttaagaggcagagctttctcctcttctgttctagagtc
tcccccagctgtcctggctagttttatgtcaacctgacacaagctagggg
tcatctgaaagggaggggaaccctcgattggagaaaatgcaacttctcca
gaaagatttcatctgtagggtatttaattagtgattgatggcagggaggg
gtccagctcattgtggatggggctacttggtcccagtgtctactgaaaaa
caaggctgagcagaatatggaggagcaatcacttcaggcttcttgcatca
gctcttgtcctcaggcttctgttcctttttgagttcctgctctgacttcc
tttacttgatggaattacaatgtggaaagtgtaagctaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135874773_135875996
seq2: B6Ng01-157B12.b_50_1237

seq1  GAATTCCTGACCTGTTTTTATCTCCTGAGTGCTGAGGGTCACAGGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCTGTTTTTATCTCCTGAGTGCTGAGGGTCACAGGTGTAA  50

seq1  GGGTTACCATATCCCACCTCAAATTTGGCTTTACCTTCTGGGGACCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACCATATCCCACCTCAAATTTGGCTTTACCTTCTGGGGACCGGTC  100

seq1  AACAAACACACTTGTAACTTTCTGTCATATACAGAGGTTTCAAGGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACACTTGTAACTTTCTGTCATATACAGAGGTTTCAAGGGTGCA  150

seq1  CTGATTGGCTGTCGTGTGTCCTCCAGCCTCCCTGCTCTGAGGCACTTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCTGTCGTGTGTCCTCCAGCCTCCCTGCTCTGAGGCACTTGCG  200

seq1  GTTCCTACACAGAGGGCATGACTACGGATACAGAGCATCCTTGCCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACACAGAGGGCATGACTACGGATACAGAGCATCCTTGCCTTCCT  250

seq1  CTCTTCCCTCACAGCACTTTGCCTTGGAGCGAATCTTTATTGCTACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTCACAGCACTTTGCCTTGGAGCGAATCTTTATTGCTACATAG  300

seq1  CTCCTTGGCTAAGTCCGTCATCCTGTGCTAGCACAAAGCTTACGGCCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGCTAAGTCCGTCATCCTGTGCTAGCACAAAGCTTACGGCCCGT  350

seq1  CCTGCTTGGGTCTGCTCACTTCCTTCCTCCCCTCTCCTTTCATGTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGGGTCTGCTCACTTCCTTCCTCCCCTCTCCTTTCATGTGCATG  400

seq1  AGCCTGTGCTCGTGTGAGCGAGTTCATGTGTATGCAAAAGCACCTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGCTCGTGTGAGCGAGTTCATGTGTATGCAAAAGCACCTCTGAC  450

seq1  ACAGGACCAACCCTCCTTCACTCAGTGGTAGCAGTTGGGATACCCTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCAACCCTCCTTCACTCAGTGGTAGCAGTTGGGATACCCTTCAA  500

seq1  TTGTGATGACACCTCTGGCTTATGTAAAAGGTAAACTTGGTGGGCTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGACACCTCTGGCTTATGTAAAAGGTAAACTTGGTGGGCTGTGG  550

seq1  GCTGACACCAAGGTAGGTGAGTCAGATTCCTCTTGCCTGAAGGTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACCAAGGTAGGTGAGTCAGATTCCTCTTGCCTGAAGGTTGAGAA  600

seq1  TGAAATTTCTATCCACTGGCCAGTCTGGCGATTCACACTCCCCACACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCTATCCACTGGCCAGTCTGGCGATTCACACTCCCCACACTCC  650

seq1  CGACGCTTGGGAGATGGAGGCAGTGGGGTCAGAAGTTCAAGGCCATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGCTTGGGAGATGGAGGCAGTGGGGTCAGAAGTTCAAGGCCATCCTT  700

seq1  GACGACATAGTTGAGTTGAGGCTAGCCTTTGATACAGAAACAGAAGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATAGTTGAGTTGAGGCTAGCCTTTGATACAGAAACAGAAGGACC  750

seq1  CTGTTTGTAAAACGGAAAGTGAGGAAGAAACTAAGACATTCCCAGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTAAAACGGAAAGTGAGGAAGAAACTAAGACATTCCCAGATAAA  800

seq1  GAAACCAATGGAATGTTTTGATAGGGCCTCGGAAACTGCTTTTGCTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATGGAATGTTTTGATAGGGCCTCGGAAACTGCTTTTGCTACAA  850

seq1  AGCCACTGACTCCTCTCTTGGCACCCACAACTGAAGTAAGTACTCAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGACTCCTCTCTTGGCACCCACAACTGAAGTAAGTACTCAATGA  900

seq1  CCTGTGACCTGGATTTAATACCACATGGAAGACGGCAGCAACCAACCCCG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CCTGTGACCTGGATTTAATACCACATGGAAGACGGCAGC-ACCAACCTCG  949

seq1  GAAAGTTGGCTTCTGACTTCCACATGTGTACTTTGGCACCAAAGGACCTC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGTTGGCTTCTGACTTCCACATGTGTACTTTGGCACCAAAGGA-CTC  998

seq1  TCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAATCACAACG  1050
      |||||||||| ||| ||| |||| |||||||||||   ||||||||||||
seq2  TCTCTCTCTC-CTCCCTC-CTCAAACACACACACAACAACAATCACAACG  1046

seq1  TTTTCTTTCTTACTTTTTTTAAAGTAGAAGCAGGCAGCTGGAACTGGTAA  1100
       |||||||| ||||||||   ||||||||||| |||||||  ||||   |
seq2  ATTTCTTTC-TACTTTTT---AAGTAGAAGCA-GCAGCTG--ACTG--TA  1087

seq1  CTCACTTGAACCCCAGGCTTTGGGAGGCAGAGGCTGGAGGATCTCTCTGT  1150
      ||||| ||||  | |||| |||||||||  | |||| ||   | ||||||
seq2  CTCAC-TGAA--CTAGGC-TTGGGAGGC--AAGCTGAAG--ACCCTCTGT  1129

seq1  TAGAGGATAGC-CTGGTCTACAGAGTGAGTTAGCCCCAGGACAGCCAGAA  1199
      |||||   ||| |||||| ||     ||| ||   |||| |  ||| | |
seq2  TAGAG--AAGCTCTGGTC-AC-----GAGATA---CCAGTAACGCC-GTA  1167

seq1  CTACACAGAGAAACCTGTTTTGGGA  1224
       |||     |||| | |||||||||
seq2  TTAC----CGAAAACCGTTTTGGGA  1188

seq1: chr5_136023253_136024278
seq2: B6Ng01-157B12.g_69_1111 (reverse)

seq1  TTATTTAGCTTACAC-TTCCACATTGT-AGTCCATC-AGTGAAGGAAGTC  47
      ||||||||||||||| ||||||||||| | |||||| ||| |||||||||
seq2  TTATTTAGCTTACACTTTCCACATTGTAATTCCATCAAGTAAAGGAAGTC  50

seq1  AGGGCAGGAACTC-AAAAGGGACAGAAGCCTGGAGGCAGGAGCTGATGC-  95
      || |||||||||| |||||| |||||||||||  | || |||||||||| 
seq2  AGAGCAGGAACTCAAAAAGGAACAGAAGCCTGAGGACAAGAGCTGATGCA  100

seq1  AGAGGCCTGAGTGGCTTGCTCCT-CACTGTCTGCTCAGCC-TGCTTTTCA  143
      ||| ||||||   | |||||||| ||   ||||||||||| || ||||||
seq2  AGAAGCCTGAAGTGATTGCTCCTCCATATTCTGCTCAGCCTTGTTTTTCA  150

seq1  GTAGACACTGGGA-CAAGTAGCCCCATCCACAATGGGCTGG-GCCCTCCC  191
      ||||||||||||| ||||||||||||||||||||| |||||  |||||||
seq2  GTAGACACTGGGACCAAGTAGCCCCATCCACAATGAGCTGGACCCCTCCC  200

seq1  TGCCATCAGTCACTAATT-AATACCCTACAGTTG-AATC-TTCTGGAGAA  238
      |||||||| ||||||||| |||||||||||| || |||| ||||||||||
seq2  TGCCATCAATCACTAATTAAATACCCTACAGATGAAATCTTTCTGGAGAA  250

seq1  GTTGCATTTTCT-CAATCGA-GGTTCCC--TCCTTTCAGATGA-CCCTAG  283
      |||||||||||| ||||||| |||||||   |||||||||||| ||||||
seq2  GTTGCATTTTCTCCAATCGAGGGTTCCCCTCCCTTTCAGATGACCCCTAG  300

seq1  CTTGTGTCAGGTTGACATAAAACTAGCCAGGACAGCT-GGGGAGACTCTA  332
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTGTGTCAGGTTGACATAAAACTAGCCAGGACAGCTGGGGGAGACTCTA  350

seq1  GAACAGAAGAGGAGAAAGCTCTGCCTCTTAAGGAGTCATGTGAGTAAGCT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAGAGGAGAAAGCTCTGCCTCTTAAGGAGTCATGTGAGTAAGCT  400

seq1  TGTGCCAAGGGGATGTGGGAAGAGGGGCTTCACAGGTCCAGAGTGATAGG  432
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGCCAAGGGGATGTGAGAAGAGGGGCTTCACAGGTCCAGAGTGATAGG  450

seq1  AGGATTAGCCGGAGACTGTATTTATTTAAGGGGATGATCTATAAATTGCG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGCCGGAGACTGTATTTATTTAAGGGGATGATCTATAAATTGCG  500

seq1  TTCTAGGGGGAAGGAATGTGTAGTGTGTTTTGGCACTGTGTGTTGGGGTG  532
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGGGAAGGAATGTGTAGTGTGTTTTGGCACTGTGTGTTGGGGTG  550

seq1  GTATGTGTGTGTGTGATATGTGTGTTGGGGGTGGTGGTGGTGTGTGTGTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTGTGATATGTGTGTTGGGGGTGGTGGTGGTGTGTGTGTG  600

seq1  TGTGATATGTGTGGAGGTGCCTGCAGAAGCCAGATGGGGTGTCAGATTCC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATGTGTGGAGGTGCCTGCAGAAGCCAGATGGGGTGTCAGATTCC  650

seq1  TTGGAGTTGTAGATGGTTGTGAGCCACCCTCTACCAAACTTGGGTCCTCA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGTAGATGGTTGTGAGCCACCCTCTACCAAACTTGGGTCCTCA  700

seq1  TAACTGCTGAGCCCATCTCTCCAGCCCATCTCTCTTCTGCACATCAGAAG  732
      ||||||||||||||||||||||||||||||| | || |||||||||||||
seq2  TAACTGCTGAGCCCATCTCTCCAGCCCATCTTTTTTTTGCACATCAGAAG  750

seq1  ATGGCACTAGATCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTAGATCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  800

seq1  AACTCATGAACTCAGGACCTCTAGAAGGGAAGGGCAGTCAGTGCTTTTTT  832
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTCATGAACTCAGGACCTCTAGAAGGGAAGGGCAGTCAGTGC-TTTTT  849

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGAGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGAGT  899

seq1  TCTTTCTGGCCTTGAGCTTACTTAAGTAAGCTTTGTCAACTGACCTACCA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGCCTTGAGCTTACTTAAGTAAGCTTTGTCAACTGACCTACCA  949

seq1  CCCCCAGTACCCAAGGGAATGACTTCGATGAAGAACGCCAGCAGAGCAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTACCCAAGGGAATGACTTCGATGAAGAACGCCAGCAGAGCAGA  999

seq1  CAATGCTCCTAACACTCTGACCCTGGTGTGGCCATTCTGAATTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCCTAACACTCTGACCCTGGTGTGGCCATTCTGAATTC  1043