BAC Information

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BAC

Clone NameB6Ng01-160K03
Chromosome5 (Build37)
Map Location 84,812,402 - 84,813,639
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneLOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K03.bB6Ng01-160K03.g
ACCDH953955DH953956
length1,232651
definitionDH953955|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K03, 5' end.DH953956|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactgaggaaacacaaatggccaagaactacctgaaaaatgt
tcaacatccttaatcatcagagaaatgcaaaacaaaacaaccctgagatt
ccacctcacaccagccagaatggctaagatcaaaaactcaggtgtctgaa
gatgctggcaaggatgtgaagaaagaggaacactcctccattgctggtgg
gatggcaagttttacaaccactctggaaatcagtctggcagttcctcaga
aaattggacatagtactacccgaagacctctgtttcctataaagaattgg
gacaagaaattaagcaatgcctccaaagattcatactgattttaacttga
gtatatactttcaacattctgttttagtaaattctcaattggaacctgta
aaaggtcaaactgaacttaaagagaataacattttctgagagctctaaaa
gtattaactttaaactgcatttccatcagacttttagaaagaacacaaaa
tatacttattaaataaaacattttggctatgaataaaattccaaagtata
acacacatacacaaacacacacacacacacacacacacacacacacacac
acactcacacacacacagagagagagagagagagagagagagagagagag
agagagagagacagacagagacagagacagagagacagagacagagacag
agagacagggagacagggagacaaagagaacagttgtaaaacctgaaaag
aaaaaatatcagtctggaatgtaagaaagtagaaatagcacaatagattc
ccttacattgacagtcattttatctttcttataaatttttacttttgagt
tctaacatcttaccaatattactttttatagtgtatctataagtgcaaat
ataatttgaaacaccaaagtaatttgaagtgctgaattgtctgaaaggaa
gatgatataaggatactagcacattattggaaattttaaagattaatatg
acctatttgcctttcttagaacgaactttcttagaaaaagagctttttta
gtttgcttcatattgttgaaaaaacacctaaaaaggggggggaagcaaag
agttcattttactggagattggctgatatatagttcttggagggaagtca
agggcaggaacgttattaggaacagaacgagacccatggagggaaggttc
ttaacaggctatctgcatgatgtcctcgcttt

gaattccttatgagtctatgaagttcagtgcaagtcaacagaggcaggtg
aaggcagagaataagaaggaatcagaagattagaacaagccactgtagtt
cgaggccaagcagaggaattcaataagaagctgagagaagtcagattgaa
tcagtcagcttggtgaaaagtttgagccagaatagctgagttgaactagc
cacttagagttcagaaagaactagaggggatgagtttattcaacagtaag
cctcctacaagacaacaattacatctgacaaataaaagttactttatagt
agctttgtttggctgttgaattcatcccatctgacctgcagtttcttgtc
ttaacctgttttatttatctccagagaggagtcaaactacaaaatgcagg
tatatctcaaacattttttaaaattttaattaggtattttcttcatttac
atttccaatgctagcccaaaattcccccatccccccccatcccctatccc
cccactcccacatcttggccctggcattcccctgtactgaggcatataaa
gtttacaagaccgatgggcctctctttccaattactgccaactaggccat
cttctgatacatatgcagctagaaacacgagctctgggggtggggggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84812402_84813639
seq2: B6Ng01-160K03.b_44_1275

seq1  GAATTCTCAACTGAGGAAACACAAATGGCCAAGAACTACCTGAAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAAACACAAATGGCCAAGAACTACCTGAAAAATGT  50

seq1  TCAACATCCTTAATCATCAGAGAAATGCAAAACAAAACAACCCTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTTAATCATCAGAGAAATGCAAAACAAAACAACCCTGAGATT  100

seq1  CCACCTCACACCAGCCAGAATGGCTAAGATCAAAAACTCAGGTGTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACACCAGCCAGAATGGCTAAGATCAAAAACTCAGGTGTCTGAA  150

seq1  GATGCTGGCAAGGATGTGAAGAAAGAGGAACACTCCTCCATTGCTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCAAGGATGTGAAGAAAGAGGAACACTCCTCCATTGCTGGTGG  200

seq1  GATGGCAAGTTTTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAGTTTTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA  250

seq1  AAATTGGACATAGTACTACCCGAAGACCTCTGTTTCCTATAAAGAATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGACATAGTACTACCCGAAGACCTCTGTTTCCTATAAAGAATTGG  300

seq1  GACAAGAAATTAAGCAATGCCTCCAAAGATTCATACTGATTTTAACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAATTAAGCAATGCCTCCAAAGATTCATACTGATTTTAACTTGA  350

seq1  GTATATACTTTCAACATTCTGTTTTAGTAAATTCTCAATTGGAACCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACTTTCAACATTCTGTTTTAGTAAATTCTCAATTGGAACCTGTA  400

seq1  AAAGGTCAAACTGAACTTAAAGAGAATAACATTTTCTGAGAGCTCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAAACTGAACTTAAAGAGAATAACATTTTCTGAGAGCTCTAAAA  450

seq1  GTATTAACTTTAAACTGCATTTCCATCAGACTTTTAGAAAGAACACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACTTTAAACTGCATTTCCATCAGACTTTTAGAAAGAACACAAAA  500

seq1  TATACTTATTAAATAAAACATTTTGGCTATGAATAAAATTCCAAAGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTATTAAATAAAACATTTTGGCTATGAATAAAATTCCAAAGTATA  550

seq1  ACACACATACACAAACACACACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACAAACACACACACACACACACACACACACACACACACAC  600

seq1  ACACTCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  AGAGAGAGAGACAGACAGAGACAGAGACAGAGAGACAGAGACAGAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACAGACAGAGACAGAGACAGAGAGACAGAGACAGAGACAG  700

seq1  AGAGACAGGGAGACAGGGAGACAAAGAGAACAGTTGTAAAACCTGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGGAGACAGGGAGACAAAGAGAACAGTTGTAAAACCTGAAAAG  750

seq1  AAAAAATATCAGTCTGGAATGTAAGAAAGTAGAAATAGCACAATAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCAGTCTGGAATGTAAGAAAGTAGAAATAGCACAATAGATTC  800

seq1  CCTTACATTGACAGTCATTTTATCTTTCTTATAAATTTTTACTTTTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTGACAGTCATTTTATCTTTCTTATAAATTTTTACTTTTGAGT  850

seq1  TCTAACATCTTACCAATATTACTTTTTATAGTGTATCTATAAGTGCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATCTTACCAATATTACTTTTTATAGTGTATCTATAAGTGCAAAT  900

seq1  ATAATTTGAAACACCAAAGTAATTTGAAGGTGCTGAATTGTCTGAAAGGA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAATTTGAAACACCAAAGTAATTTGAA-GTGCTGAATTGTCTGAAAGGA  949

seq1  AGATGATATAAGGATACTAGCACATTATTGGAAATTTTAAAGATTAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATATAAGGATACTAGCACATTATTGGAAATTTTAAAGATTAATAT  999

seq1  GACCTATTTGCCTTTCTTAGAACGAACTTTCTTAG-AAAAGAGCTGTTTT  1049
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GACCTATTTGCCTTTCTTAGAACGAACTTTCTTAGAAAAAGAGCTTTTTT  1049

seq1  AGTTTGCTTCATATTGTTGAAATAAACACCTAAAAAAGGGGGGGGAAGCA  1099
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AGTTTGCTTCATATTGTTGAAA-AAACACCT-AAAAAGGGGGGGGAAGCA  1097

seq1  AAGAGTTCATTTTACT-GAGATTGGCTGATAT-TAG-TCCTGGAGGGAAG  1146
      |||||||||||||||| ||||||||||||||| ||| || ||||||||||
seq2  AAGAGTTCATTTTACTGGAGATTGGCTGATATATAGTTCTTGGAGGGAAG  1147

seq1  TC-AGGGCAGGAACGTAAATAAGAACAGAGACAGAGA-CCATGGAGGAAG  1194
      || ||||||||||||| | || ||||||| || |||| ||||||||| | 
seq2  TCAAGGGCAGGAACGTTATTAGGAACAGA-AC-GAGACCCATGGAGGGA-  1194

seq1  GGGTTCTT-ACAGGTCTACTCTGCATGGATTGTTCCTCTCGCTTT  1238
       ||||||| ||||| ||| ||||||||   |||    ||||||||
seq2  AGGTTCTTAACAGG-CTA-TCTGCATG--ATGT---CCTCGCTTT  1232


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