BAC Information

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BAC

Clone NameB6Ng01-164D03
Chromosome5 (Build37)
Map Location 108,691,217 - 108,813,807
singlet/doubletdoublet
Overlap geneDr1, Pigg
Upstream geneTgfbr3, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
Downstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164D03.bB6Ng01-164D03.g
ACCDH956583DH956584
length1,1231,115
definitionDH956583|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D03, 5' end.DH956584|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,812,678 - 108,813,807)(108,691,217 - 108,692,359)
sequence
gaattcattctattctgaatgacagaagtcctagaggtatcaggagagca
caaagcatcacccataaggataggtggctctcctatggcttcttaattgc
ctagggaggaggtctgtatgctgagactggtaaggtagggctgaaagtga
gtggcagggctaatcctcatgtacgtaacggacatgttgctgagcctgta
cagccatgggtcatctgcgagtttatctgactgtgtcgcttcctgggctt
tgacccaatgttttgtagagcaatctgtttggtctcagtcttggtatcaa
gtgcagtgctgactagtactcagcggagtagggatggcatctgatatgct
aggctatgccccacttcttcacatagttcctgaagaaagttcccaagtac
tagtatgtctcttacttccttttctggtggattgagttttggggggaatc
tttgtaaatacctcaggggattatggattctccttatggactggagaacg
tggctgagacctatgcagccactagtgttccttgcacatgctacaggggt
ctcatcctgggaaatggagcagagctttctgtagtggagaccttgaaagt
acagaaaggactctgagctcagcagagataccctggaaacgcaagaggcc
atggaaggacacttgaaagcttccccatggcatgaataggctatttatga
ttgcagcaagcagaggagacaggcaggtcaaaatggaggcctcaatttgg
ataggcacagaacaagaaacagatgctccaggaaccaagagacctcaatg
ttgtgatctgtgcagatgatgacgtatgttaataagcacagttttggaag
ggtagagtcaggcctggggagagagggaagtttcaagctcacacacaatt
ttttaaaggattattaactaattaattatttaattaattttatgatgagc
acactatagctgtctttcgacacaccagaagaggtgttggatcccattgc
agatgggtgggagctacaattgacctcagacctttgtgaaagcaatcagt
gctcttaaccgctgagtcatcctctccagtccgccctacacattcctgtc
ccagtgttgttgggatgaggctt
gaattcactacttaaaccaggctgatattactattattattattattatt
attattattactatttaatcattattctgaactttctcctattactcaac
agattggttttttccatacaatataactgattaaagttttctttccttat
actccttgaagttcctctccacttcccctcctaccaggatccacacattt
ttttgtctctcattagaaaacagacatctgggtttctgtctgagccagga
aatgatcctgtgccatgatgctcggagctgatcagcgctccatacccaaa
taccgccaggagagagctggtctcccaggggtgcagacatgcctgtgaac
acaggtaaaaccaccacttctgctcaaattcctagctcaagagggggacc
cactcagagccatcaggacacacgacccaaggaacagccggggacaggat
ccttcgggtttcatctgcaccctaagctgaccctgtgccacagctctcca
tacccaaattcttccgggagagaactggtctcccaggagtactgacacac
aggcttgcaggaggaacaagccacagttagagaaagcaagaccagctaat
accagagataaccagatggcgagaggcgtgtatggagaaagtggggaggc
agaaacctgagcagggactggtggatggagagcaggctgagggagctgag
cacaactgcagggagactgacacagagccaagagcaagagaggggagggc
agcagagtccctggcaaggggcagagccagacccgcttgaaccagcagaa
ccagctgctgcagcaggaaaaggagccagcaactgagggaggggttaggg
ggagagcttacattacggtgttttctgttaattgtgaactagaccaaggc
atcccagtaatagggacaaggctgcaaagtactgactctctgtgggacac
agagagcagtttgtccaggcccagcctgtatcctcagctggaaagaactg
tctcaaaaggaagagtaatctcacccagcattagtcctagaacaggttca
gtagtaatggtagctcgacctcagaaatctcctgaactgtggacgatgtt
tactctgaccagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108812678_108813807
seq2: B6Ng01-164D03.b_46_1168 (reverse)

seq1  AAGCCTCATCCCAACACACA-TGGGATCAGGAATTGTGTGTGGCGGGCTG  49
      |||||||||||||||| ||| ||||| |||||| |||||  ||||| |||
seq2  AAGCCTCATCCCAACA-ACACTGGGA-CAGGAA-TGTGTAGGGCGGACTG  47

seq1  GAGA-GATGACTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT  98
      |||| |||||||||||||||||||||||||| |||| |  || |||| ||
seq2  GAGAGGATGACTCAGCGGTTAAGAGCACTGATTGCTTTCACAAAGGT-CT  96

seq1  GAGTTCAATTTGTAGCTCACAACCATCTGCAATGGGATCCAACACCCTCT  148
      ||| |||| ||||||||| || |||||||||||||||||||||| |||||
seq2  GAGGTCAA-TTGTAGCTCCCACCCATCTGCAATGGGATCCAACA-CCTCT  144

seq1  TCTGGTGTGTCTGAAGACAGCTATAGTGTGCTCATACATAAAATTAATTA  198
      |||||||||||  |||||||||||||||||||||| ||||||||||||||
seq2  TCTGGTGTGTCGAAAGACAGCTATAGTGTGCTCAT-CATAAAATTAATTA  193

seq1  ATTAATTAATTAGTTAATTAATCCTTTAAAAAATTGTGTGTGAGCTTGAA  248
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAATTAATTAGTTAA-TAATCCTTTAAAAAATTGTGTGTGAGCTTGAA  242

seq1  ACTTCCCATCTCTCCCCAGGCCTTGACTCTACCCTTCC-AAACTGTGCTT  297
      ||||||| |||||||||||||| ||||||||||||||| |||||||||||
seq2  ACTTCCC-TCTCTCCCCAGGCC-TGACTCTACCCTTCCAAAACTGTGCTT  290

seq1  ATTAACATACGTCATCATCTGCACAGATCACAACATTGAGGTCTCTTGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATACGTCATCATCTGCACAGATCACAACATTGAGGTCTCTTGGT  340

seq1  TCCTGGAGCATCTGTTTCTTGTTCTGTGCCTATCCAAATTGAGGCCTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGCATCTGTTTCTTGTTCTGTGCCTATCCAAATTGAGGCCTCCA  390

seq1  TTTTGACCTGCCTGTCTCCTCTGCTTGCTGCAATCATAAATAGCCTATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCTGCCTGTCTCCTCTGCTTGCTGCAATCATAAATAGCCTATTC  440

seq1  ATGCCATGGGGAAGCTTTCAAGTGTCCTTCCATGGCCTCTTGCGTTTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGGGGAAGCTTTCAAGTGTCCTTCCATGGCCTCTTGCGTTTCCA  490

seq1  GGGTATCTCTGCTGAGCTCAGAGTCCTTTCTGTACTTTCAAGGTCTCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCTCTGCTGAGCTCAGAGTCCTTTCTGTACTTTCAAGGTCTCCAC  540

seq1  TACAGAAAGCTCTGCTCCATTTCCCAGGATGAGACCCCTGTAGCATGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGCTCTGCTCCATTTCCCAGGATGAGACCCCTGTAGCATGTGC  590

seq1  AAGGAACACTAGTGGCTGCATAGGTCTCAGCCACGTTCTCCAGTCCATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACTAGTGGCTGCATAGGTCTCAGCCACGTTCTCCAGTCCATAA  640

seq1  GGAGAATCCATAATCCCCTGAGGTATTTACAAAGATTCCCCCCAAAACTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCCATAATCCCCTGAGGTATTTACAAAGATTCCCCCCAAAACTC  690

seq1  AATCCACCAGAAAAGGAAGTAAGAGACATACTAGTACTTGGGAACTTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCAGAAAAGGAAGTAAGAGACATACTAGTACTTGGGAACTTTCT  740

seq1  TCAGGAACTATGTGAAGAAGTGGGGCATAGCCTAGCATATCAGATGCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACTATGTGAAGAAGTGGGGCATAGCCTAGCATATCAGATGCCAT  790

seq1  CCCTACTCCGCTGAGTACTAGTCAGCACTGCACTTGATACCAAGACTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCCGCTGAGTACTAGTCAGCACTGCACTTGATACCAAGACTGAG  840

seq1  ACCAAACAGATTGCTCTACAAAACATTGGGTCAAAGCCCAGGAAGCGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGATTGCTCTACAAAACATTGGGTCAAAGCCCAGGAAGCGACA  890

seq1  CAGTCAGATAAACTCGCAGATGACCCATGGCTGTACAGGCTCAGCAACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGATAAACTCGCAGATGACCCATGGCTGTACAGGCTCAGCAACAT  940

seq1  GTCCGTTACGTACATGAGGATTAGCCCTGCCACTCACTTTCAGCCCTACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTACGTACATGAGGATTAGCCCTGCCACTCACTTTCAGCCCTACC  990

seq1  TTACCAGTCTCAGCATACAGACCTCCTCCCTAGGCAATTAAGAAGCCATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTCTCAGCATACAGACCTCCTCCCTAGGCAATTAAGAAGCCATA  1040

seq1  GGAGAGCCACCTATCCTTATGGGTGATGCTTTGTGCTCTCCTGATACCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCACCTATCCTTATGGGTGATGCTTTGTGCTCTCCTGATACCTC  1090

seq1  TAGGACTTCTGTCATTCAGAATAGAATGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  TAGGACTTCTGTCATTCAGAATAGAATGAATTC  1123

seq1: chr5_108691217_108692359
seq2: B6Ng01-164D03.g_68_1182

seq1  GAATTCACTACTTAAACCAGGCTGATATTACTATTATTATTATTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACTTAAACCAGGCTGATATTACTATTATTATTATTATTATT  50

seq1  ATTATTATTACTATTTAATCATTATTCTGAACTTTCTCCTATTACTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTACTATTTAATCATTATTCTGAACTTTCTCCTATTACTCAAC  100

seq1  AGATTGGTTTTTTCCATACAATATAACTGATTAAAGTTTTCTTTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGTTTTTTCCATACAATATAACTGATTAAAGTTTTCTTTCCTTAT  150

seq1  ACTCCTTGAAGTTCCTCTCCACTTCCCCTCCTACCAGGATCCACACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGAAGTTCCTCTCCACTTCCCCTCCTACCAGGATCCACACATTT  200

seq1  TTTTGTCTCTCATTAGAAAACAGACATCTGGGTTTCTGTCTGAGCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTCTCATTAGAAAACAGACATCTGGGTTTCTGTCTGAGCCAGGA  250

seq1  AATGATCCTGTGCCATGATGCTCGGAGCTGATCAGCGCTCCATACCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCTGTGCCATGATGCTCGGAGCTGATCAGCGCTCCATACCCAAA  300

seq1  TACCGCCAGGAGAGAGCTGGTCTCCCAGGGGTGCAGACATGCCTGTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCCAGGAGAGAGCTGGTCTCCCAGGGGTGCAGACATGCCTGTGAAC  350

seq1  ACAGGTAAAACCACCACTTCTGCTCAAATTCCTAGCTCAAGAGGGGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAACCACCACTTCTGCTCAAATTCCTAGCTCAAGAGGGGGACC  400

seq1  CACTCAGAGCCATCAGGACACACGACCCAAGGAACAGCCGGGGACAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGCCATCAGGACACACGACCCAAGGAACAGCCGGGGACAGGAT  450

seq1  CCTTCGGGTTTCATCTGCACCCTAAGCTGACCCTGTGCCACAGCTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGGTTTCATCTGCACCCTAAGCTGACCCTGTGCCACAGCTCTCCA  500

seq1  TACCCAAATTCTTCCGGGAGAGAACTGGTCTCCCAGGAGTACTGACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAATTCTTCCGGGAGAGAACTGGTCTCCCAGGAGTACTGACACAC  550

seq1  AGGCTTGCAGGAGGAACAAGCCACAGTTAGAGAAAGCAAGACCAGCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCAGGAGGAACAAGCCACAGTTAGAGAAAGCAAGACCAGCTAAT  600

seq1  ACCAGAGATAACCAGATGGCGAGAGGCGTGTATGGAGAAAGTGGGGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGATAACCAGATGGCGAGAGGCGTGTATGGAGAAAGTGGGGAGGC  650

seq1  AGAAACCTGAGCAGGGACTGGTGGATGGAGAGCAGGCTGAGGGAGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGAGCAGGGACTGGTGGATGGAGAGCAGGCTGAGGGAGCTGAG  700

seq1  CACAACTGCAGGGAGACTGACACAGAGCCAAGAGCAAGAGAGGGGAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGCAGGGAGACTGACACAGAGCCAAGAGCAAGAGAGGGGAGGGC  750

seq1  AGCAGAGTCCCTGGCAAGGGGCAGAGCCAGACCCGCTTGAACCAGCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTCCCTGGCAAGGGGCAGAGCCAGACCCGCTTGAACCAGCAGAA  800

seq1  CCAGCTGCTGCAGCAGGAAAAGGAGCCAGCAACTGAGGGAGGGGTTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTGCAGCAGGAAAAGGAGCCAGCAACTGAGGGAGGGGTTAGGG  850

seq1  GGAGAAGCCTACATTACGGTGTTTTCTGTTAATTGTGAACTAGACCAAGG  900
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAG-AGCTTACATTACGGTGTTTTCTGTTAATTGTGAACTAGACCAAGG  899

seq1  CATCCCAGTAAATAGGGACAAAGGCTGCAAAAGACTGACTCTCTGTGGGG  950
      ||||||||| ||||||||| |||||||||||  ||||||||||||| |||
seq2  CATCCCAGT-AATAGGGAC-AAGGCTGCAAAGTACTGACTCTCTGT-GGG  946

seq1  ACACAGAGAGCAGTTTGTCCAGGCCCAGCCTGGAATCCTCAGCTGGGAAA  1000
      ||||||||||||||||||||||||||||||| | |||||||||| |||||
seq2  ACACAGAGAGCAGTTTGTCCAGGCCCAGCCT-GTATCCTCAGCT-GGAAA  994

seq1  GAAACTGTCTCAAAAAGGAAAGAGGAAAATCTCACCCAAGGGAATAAGTC  1050
      | |||||||||||||  | |||||   |||||||||||   | || ||||
seq2  G-AACTGTCTCAAAA--GGAAGAG--TAATCTCACCCA---GCATTAGTC  1036

seq1  CTAGAACAAGGGTCAGGGTAGTACAGGGGTAGCTCTGAGCTCAAGAAATC  1100
      ||||||| ||| |||  |||||  |  |||||||| || ||| |||||||
seq2  CTAGAAC-AGGTTCA--GTAGT--AATGGTAGCTC-GACCTC-AGAAATC  1079

seq1  TTCCCTGAGACCATGGTGGACAGATGTTTACTCTGACCAGTGG  1143
      |  |||||    |  |||||| |||||||||||||||||||||
seq2  T--CCTGA----ACTGTGGAC-GATGTTTACTCTGACCAGTGG  1115