BAC Information

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BAC

Clone NameB6Ng01-165B22
Chromosome5 (Build37)
Map Location 71,714,759 - 71,715,848
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2, LOC635092
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165B22.bB6Ng01-165B22.g
ACCDH957262DH957263
length1,0981,116
definitionDH957262|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B22, 5' end.DH957263|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcatcaagctgactcaagcatcatgcccctgacacctttagaa
ttttagagtaaataaatttgctttattcacaaatttaacaagccttgagt
gttttattatagtagcataacatgtactgatacacaagcaggtttacact
gaacataagtaaaaattaaaagaatgaaagcagacaaacaaacaaacctg
ctctgtagtccattatgtggtggttaactgttccttttgtttcattacag
ggtgttctttctttgttgttggtttttttttgtggtttattatgttctct
tggttttgcataatttgatgctctatagggtttagatgattttattgaga
aagaatttaaagttgagtaggtaaggaatgggaaaggatatgagaagact
tgggggacaggaaaaatatgattaaatatgtataaatttattatttttac
ataataaaactataatataataaaaaaattaagtgagatttaaaatgagt
agaaaaatgccagtatttcattctggtaattgcaaaaccaaatccttttt
aaactatcagtacttttctatgtatttctttcttaaaacatcctaacata
gtttctatttttcctctcttacttcaagctcattacttctgtaaacagtg
tatataatttgaaaatatacatacatataataattcaggatctgctctcc
atgttttttctattgtctgtagtatatgttcactcttgattcaatttttt
taagggtgttttttggttttcttcttttttcatttgtgatggcttctcct
aaaatgtgcgttgaggagtgtttggggctcttctcaatcagaaacatctc
tgtaggggtaagcttttgtgaatatgacttatggacagactttggtacca
tctcaatttttcttatgattagagacagaaactaagaccaacatgaatat
gatggtattcatatgttacttgcttctttctcaataccaagaaggcatgt
cttccctgtgactccttctccacacagacctcatatgtggttgcctttgg
ggttatgaagcatttatgcccataattcaatatggctatggaaagaca
gaattcaaggctatgtcacactttctgttttattagatttagtgtatcca
gttttacgttgactttggtgatccatttggacttgagtttcacgcaaagt
gatacatatggatctatttgcattcttctacatgcatacatctagttata
ccagcaccatttgttgaagatgctttcttttttccattgtatggttttgc
tttctttgtcaaaaattaagtgtacataggtatgtgggtttattttaggg
tctttattcaattctgtttatcaacttgtctgttcctataacaataccat
gaagcttttattactatcgttctataatatacattgaggtcagggatggt
gataactgtggaagtgattttattgttcaggaattttttttttgcgactc
caatatgtttttccatataaagttgactattgcattgaatctgtaagttg
ctgttcatatgatgatcattttgactatgttaatcctactgatccatgag
tatgggagagctttccagcttctgatatctttctcagtttctttcttcag
caacttgaagttcttgtcatataggtctttcacttgcttggttagagttg
accaagatattttatattatttgttcacattgtaagtggtattgttttct
caattactataccatttgtataaaggagagatactgatttctttgagtta
attttgtatccagccactttgctgaaggtgtttatcagctgtaggagttc
tctggtataatgtttggggactttcatgcatactatcatatcatctgcaa
atagtagtgttttgacttcttttccaatttgtatcccctgatctttagtg
tcttattactatgtctaaaattttaggtactattttgaatagatagggag
agagtggtcagcctgtaatacccctgattatagtggaactggctttaagg
tacttctattaggtccatgtggcctaattgcctgcaaataattctttgag
taaagttagagaaaatgccctggactcccggaagagctaaagactataaa
catgcgaggagattgggggttttgccacagcgctttagccctcctaagga
aaggaaaaagttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71714759_71715848
seq2: B6Ng01-165B22.b_44_1141 (reverse)

seq1  TGTCTTT-CATAGCCATATTGAATTAT-GGCAT-AATGCTTCTATAACCC  47
      ||||||| ||||||||||||||||||| ||||| |||||||| |||||||
seq2  TGTCTTTCCATAGCCATATTGAATTATGGGCATAAATGCTTC-ATAACCC  49

seq1  --AAAGCA--CACATATGA-GTCTGTGT-GAGAA-GAGTCACAGGGAAGA  90
        || |||  ||||||||| |||||||| ||||| |||||||||||||||
seq2  CAAAGGCAACCACATATGAGGTCTGTGTGGAGAAGGAGTCACAGGGAAGA  99

seq1  CCTG-CTTCCTGGTAATTGAGGAAGAAGCAAGTAACCTATGAATACCATC  139
      | || |||| |||| |||||| |||||||||||||| |||||||||||||
seq2  CATGCCTTCTTGGT-ATTGAGAAAGAAGCAAGTAACATATGAATACCATC  148

seq1  ATATTCATTGTTGGTCTTAGTTTCTGTCTCTAATCATAAGAAAAATTGAG  189
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCA-TGTTGGTCTTAGTTTCTGTCTCTAATCATAAGAAAAATTGAG  197

seq1  ATGGTACCAAAGTCTGTCCATAAGTCATATTCACAAAAGCTTACCCCTAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCAAAGTCTGTCCATAAGTCATATTCACAAAAGCTTACCCCTAC  247

seq1  AGAGATGTTTCTGATTGAGAAGAGCCCCAAACACTCCTCAACGCACATTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTTCTGATTGAGAAGAGCCCCAAACACTCCTCAACGCACATTT  297

seq1  TAGGAGAAGCCATCACAAATGAAAAAAGAAGAAAACCAAAAAACACCCTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGCCATCACAAATGAAAAAAGAAGAAAACCAAAAAACACCCTT  347

seq1  AAAAAAATTGAATCAAGAGTGAACATATACTACAGACAATAGAAAAAACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGAATCAAGAGTGAACATATACTACAGACAATAGAAAAAACA  397

seq1  TGGAGAGCAGATCCTGAATTATTATATGTATGTATATTTTCAAATTATAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCAGATCCTGAATTATTATATGTATGTATATTTTCAAATTATAT  447

seq1  ACACTGTTTACAGAAGTAATGAGCTTGAAGTAAGAGAGGAAAAATAGAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTACAGAAGTAATGAGCTTGAAGTAAGAGAGGAAAAATAGAAA  497

seq1  CTATGTTAGGATGTTTTAAGAAAGAAATACATAGAAAAGTACTGATAGTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAGGATGTTTTAAGAAAGAAATACATAGAAAAGTACTGATAGTT  547

seq1  TAAAAAGGATTTGGTTTTGCAATTACCAGAATGAAATACTGGCATTTTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGATTTGGTTTTGCAATTACCAGAATGAAATACTGGCATTTTTC  597

seq1  TACTCATTTTAAATCTCACTTAATTTTTTTATTATATTATAGTTTTATTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTTTAAATCTCACTTAATTTTTTTATTATATTATAGTTTTATTA  647

seq1  TGTAAAAATAATAAATTTATACATATTTAATCATATTTTTCCTGTCCCCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATAATAAATTTATACATATTTAATCATATTTTTCCTGTCCCCC  697

seq1  AAGTCTTCTCATATCCTTTCCCATTCCTTACCTACTCAACTTTAAATTCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCTCATATCCTTTCCCATTCCTTACCTACTCAACTTTAAATTCT  747

seq1  TTCTCAATAAAATCATCTAAACCCTATAGAGCATCAAATTATGCAAAACC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATAAAATCATCTAAACCCTATAGAGCATCAAATTATGCAAAACC  797

seq1  AAGAGAACATAATAAACCACAAAAAAAAACCAACAACAAAGAAAGAACAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACATAATAAACCACAAAAAAAAACCAACAACAAAGAAAGAACAC  847

seq1  CCTGTAATGAAACAAAAGGAACAGTTAACCACCACATAATGGACTACAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATGAAACAAAAGGAACAGTTAACCACCACATAATGGACTACAGA  897

seq1  GCAGGTTTGTTTGTTTGTCTGCTTTCATTCTTTTAATTTTTACTTATGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTGTTTGTTTGTCTGCTTTCATTCTTTTAATTTTTACTTATGTT  947

seq1  CAGTGTAAACCTGCTTGTGTATCAGTACATGTTATGCTACTATAATAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAACCTGCTTGTGTATCAGTACATGTTATGCTACTATAATAAAA  997

seq1  CACTCAAGGCTTGTTAAATTTGTGAATAAAGCAAATTTATTTACTCTAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGGCTTGTTAAATTTGTGAATAAAGCAAATTTATTTACTCTAAA  1047

seq1  ATTCTAAAGGTGTCAGGGGCATGATGCTTGAGTCAGCTTGATGAAGAATT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGGTGTCAGGGGCATGATGCTTGAGTCAGCTTGATGAAGAATT  1097

seq1  C  1090
      |
seq2  C  1098