BAC Information

Click to search

BAC

Clone NameB6Ng01-165C06
Chromosome5 (Build37)
Map Location 27,394,274 - 27,395,207
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneLOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C06.bB6Ng01-165C06.g
ACCDH957278DH957279
length1,165927
definitionDH957278|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C06, 5' end.DH957279|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcacagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggagaatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacttggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aataatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaaagcggacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcttagagctccca
tggacgagctagagaagtagccaagagctaacgggatctgcaacctatag
aggaacaacttatgaactaatcatacccagagtcttgatcttagctgcct
ttttatcagagaatggcctagtcggcatcctggaaggaagctatgactgt
aactatataccagacaggaataacaagggccgaatgggaagtagtggggc
agtgagtcgcgggac
gaattctttaaagttctgttaatggtttgtttcacttgcatttcacagtg
aatactggaatactaagtagaggtatttttagagagatttcacacttata
tgtgttggcttagattggtgatagaattttgggacagatattatgtgtcc
ctcttcattcacttccggctgccacagacatctctgtcctgttctattac
acctgttttggaagtcctgttctctctgcccatattttatgctttctaaa
acaaacaccacagactgggtggctgagaacaattcctatttgttatctca
gagttctggatgctggaaactcaaaaacaaaagtatagaagagtctctcc
cctcttgatggtagggagggtccttttctgtcttttccaactgtgagaga
gttgatcctgctgtgtgtcttcgggttgtaaggaggccctttctgtgagt
ctttcaaccgtagggagcatacttctgtgtttcctccagtgtctagtagt
cctgacaacccagaccttgtgtcaacatctctccaagtttatgtcctccc
tgttcctggctaccttctccaactttcttttcccttcttataataagcac
agttgtgagtgcctgatttccacataaggacatgttctgagagacttggt
tagacaagcttcctcagcagccaagatatgaaatttgtctaggtatctac
tgatgactaaatggatatgtgcaatgtattattcactctttaaaaaaaat
cctgttgttggcagcaacacgaggaaccatgcagacattgtgttaagtga
gacagccaagcatggagtgtctcattacgtctaggaagcagatatgtggt
gaaatgtggtgtatgatttctagctgagcagagctacattcttctcccat
gcagacactgccattatgctgaagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27394274_27395207
seq2: B6Ng01-165C06.g_68_994

seq1  GAATTCTTTAAAGTTCTGTTAATGGTTTGTTTCACTTGCATTTCACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGTTCTGTTAATGGTTTGTTTCACTTGCATTTCACAGTG  50

seq1  AATACTGGAATACTAAGTAGAGGTATTTTTAGAGAGATTTCACACTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGAATACTAAGTAGAGGTATTTTTAGAGAGATTTCACACTTATA  100

seq1  TGTGTTGGCTTAGATTGGTGATAGAATTTTGGGACAGATATTATGTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGCTTAGATTGGTGATAGAATTTTGGGACAGATATTATGTGTCC  150

seq1  CTCTTCATTCACTTCCGGCTGCCACAGACATCTCTGTCCTGTTCTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTCACTTCCGGCTGCCACAGACATCTCTGTCCTGTTCTATTAC  200

seq1  ACCTGTTTTGGAAGTCCTGTTCTCTCTGCCCATATTTTATGCTTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTGGAAGTCCTGTTCTCTCTGCCCATATTTTATGCTTTCTAAA  250

seq1  ACAAACACCACAGACTGGGTGGCTGAGAACAATTCCTATTTGTTATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCACAGACTGGGTGGCTGAGAACAATTCCTATTTGTTATCTCA  300

seq1  GAGTTCTGGATGCTGGAAACTCAAAAACAAAAGTATAGAAGAGTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGGATGCTGGAAACTCAAAAACAAAAGTATAGAAGAGTCTCTCC  350

seq1  CCTCTTGATGGTAGGGAGGGTCCTTTTCTGTCTTTTCCAACTGTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGATGGTAGGGAGGGTCCTTTTCTGTCTTTTCCAACTGTGAGAGA  400

seq1  GTTGATCCTGCTGTGTGTCTTCGGGTTGTAAGGAGGCCCTTTCTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCTGCTGTGTGTCTTCGGGTTGTAAGGAGGCCCTTTCTGTGAGT  450

seq1  CTTTCAACCGTAGGGAGCATACTTCTGTGTTTCCTCCAGTTTCTAGTAGT  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTCAACCGTAGGGAGCATACTTCTGTGTTTCCTCCAGTGTCTAGTAGT  500

seq1  CCTGACAACCCAGACCTTGTGTCAGCATCTCTCCAAGTTTATGTCCTCCC  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGACAACCCAGACCTTGTGTCAACATCTCTCCAAGTTTATGTCCTCCC  550

seq1  TGTTCCTGGCTACCTTCTCCAACTTTCTTTTCCCTTCTTATAATAAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGCTACCTTCTCCAACTTTCTTTTCCCTTCTTATAATAAGCAC  600

seq1  AGTTGTGAGTGCCTGATTTCCACATAAGGACATGTTCTGAGAGACTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGTGCCTGATTTCCACATAAGGACATGTTCTGAGAGACTTGGT  650

seq1  TAGACAAGCTTCCTCAGCAGCCAAGATATGAAATTTGTCTAGGTATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGCTTCCTCAGCAGCCAAGATATGAAATTTGTCTAGGTATCTAC  700

seq1  TGATGACTAAATGGATATGTGCAATGTATTATTCACTCATTAAAAAAAAA  750
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  TGATGACTAAATGGATATGTGCAATGTATTATTCACTC-TTTAAAAAAAA  749

seq1  TCCTGTTGTTGGCAGCAACACGAGGAACCAGGCAGAACATTGTGTTAAGT  800
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TCCTGTTGTTGGCAGCAACACGAGGAACCATGCAG-ACATTGTGTTAAGT  798

seq1  GAGACAGCCAAGCAGGGAGTGTCTCAGTACGTCGAGGAAGCAGATATGTG  850
      |||||||||||||| ||||||||||| |||||| ||||||||||||||||
seq2  GAGACAGCCAAGCATGGAGTGTCTCATTACGTCTAGGAAGCAGATATGTG  848

seq1  GTGTAAATGTGGTGTAATGTTTTCCTAGCTGAGCAGAGCTCCA-TCTTCT  899
      ||| ||||||||||| ||| ||| |||||||||||||||| || ||||||
seq2  GTG-AAATGTGGTGT-ATGATTT-CTAGCTGAGCAGAGCTACATTCTTCT  895

seq1  CCCCTGCAGCTCACTGCCATTTTTGCTGGAAGCTT  934
      ||| |||||  |||||||| || |||| |||||||
seq2  CCCATGCAG-ACACTGCCA-TTATGCT-GAAGCTT  927