BAC Information

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BAC

Clone NameB6Ng01-165C09
Chromosome5 (Build37)
Map Location 59,037,420 - 59,038,509
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C09.bB6Ng01-165C09.g
ACCDH957284DH957285
length1,1631,098
definitionDH957284|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C09, 5' end.DH957285|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatagctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgatat
tccaactcacaccagtcagaattactaagatcaaacattcaattgccagc
aaatgctggtgaggatgtgaagaaagagtaacactcttccattgatggtg
gaattgcaagcttgttcaatcactctggaaatcaatctggtggtttctca
gaaaattggatatagtactatgggaggatcctgcaatacttttcctgggc
aaatatccagaagatgttccaactggtaagaaagacacatgctccactat
gttcatagcagccttatttataataactagaagctggaaagaacccagat
gcccctcaacagaataatggatacagaaaatgtggtacatttattaaaaa
gaatgaatttatgaaattcctaggcaaatggattgatctggagggcatca
tcctgagtgagataacccaatcacaaaagaactcacatgatatgtactca
ctgataagtggatattagccaagaaacttagcatcccaaagatacaagat
actaaacacatgaaactgaagaagaatgaagaccaaaatgtggacacttt
gccccttcttagaattgggaacaaaacatccatggaaggagttacagaga
caaagtttggagctgagacaaaaggatggaccatctagacactaccaaat
ccggggatccatcccataatcacccgccaaatgcagaaaccattgcattc
actagcaagatgttgctgaaaggaccctgatatagctgtctcttgtgaga
ctatgccggggcctagcaaacactgatgtggattctcacagtcagctatt
gaatggatcacagggtccccaatggaggagcttgagaaagtatccaagga
gttaaagggtctgcaaccctataggtggaacaacaatatgactaaccagt
accccctggagctcatgtttctagctgcatattgtttcaaagatgaacct
attcagccatcgtggaaagagaggcccattggtctttgcaaactttaatt
gccttattacaagtggaaccccagggccaggtagtttgagttaggtgggt
tgagggagagcag
gaattcattttgatggagatatgcccctgctgccctgattagctgaagct
gcgtgcctggtgaggtggcatggcctgctgtgtgtggatgggaactgaga
atataaaagagtgagaggcccagggtttgggggagatataaacaagggag
agatataaacaagggagatataaacaagggagatatataaacaagggaga
tataaacaagaagaaacaggactgaataaatgtgtgcagaaggatcctgt
tgcagagtcgttactgctggccagtctggcgcgcgcaagagtacaaggtg
aattgccatgaaacagtgaaaactctggtcaattgacttttaatttgttg
aagtaaaaaggaaatttaacatataaatttgaaagaaggaaatggatatg
gaaagataaagaggatgaagaaaaggttaaagaagatagatgaaagcaga
ataaaaaagaacaaaataaggagaaaagaacactcaaataaaacaatgaa
gaggaaaatggcttatctctgcactttaaaaagtcaaaaaagttttgtct
tattattaagatagcaggcgttttaaaaatatagacatttgtgagtccat
ggactttatgtgcctacctcataaaaagctactagaactcaccatgtaga
ccagacatacctcgaaagaagtccacatggcccgctcaacaaagctggaa
ttaaaagtgtgtaacaaacatatgcgatattttattgattgattgattga
ttcattcattcattcattcattcatttgttcactgtttattttgcataag
gattatacagtctaatataatgttcttatctattaaaactattaaaggca
agagataaccctgtccttatatgtgtgaaatttaacctttagttatatac
acatagatgagtgtccaattaatgcaattaattatcaagcataagaaata
ttgtaaacactccatggttaactgtttctgtaaagtgttctcaactttgg
actgctcagttaacttgatttggaaaagagaacaaaaggtggggttgtac
ttcatggtgtggagtccataatataaaaccttatgtagattccaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59037420_59038509
seq2: B6Ng01-165C09.g_70_1167 (reverse)

seq1  ACATT-GAAACTACATAAG---TTCTATTAT-GACTTCACA-CATGAAGT  44
      ||||| ||| |||||||||   || |||||| |||| |||| ||||||||
seq2  ACATTGGAATCTACATAAGGTTTTATATTATGGACTCCACACCATGAAGT  50

seq1  ACAA-CCCAC--TTTGTTCTCTTTT-CAAATCAAGTTAAACTGAGCAGTC  90
      |||| |||||  ||||||||||||| ||||||||||| ||||||||||||
seq2  ACAACCCCACCTTTTGTTCTCTTTTCCAAATCAAGTT-AACTGAGCAGTC  99

seq1  CAAAGTTGAGAACACTTTACAGAAACAGTTAACCATGGAGTGTTTACAAT  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAGAACACTTTACAGAAACAGTTAACCATGGAGTGTTTACAAT  149

seq1  ATTTCTTTATGCTTGATAATTAATTGCATTAATTGGACACTCATCTATGT  190
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTC-TTATGCTTGATAATTAATTGCATTAATTGGACACTCATCTATGT  198

seq1  GTATATAACTAAAGGTTAAATTTCACACATATAAGGACAGGGTTATCTCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAACTAAAGGTTAAATTTCACACATATAAGGACAGGGTTATCTCT  248

seq1  TGCCTTTAATAGTTTTAATAGATAAGAACATTATATTAGACTGTATAATC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATAGTTTTAATAGATAAGAACATTATATTAGACTGTATAATC  298

seq1  CTTATGCAAAATAAACAGTGAACAAATGAATGAATGAATGAATGAATGAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCAAAATAAACAGTGAACAAATGAATGAATGAATGAATGAATGAA  348

seq1  TCAATCAATCAATCAATAAAATATCGCATATGTTTGTTACACACTTTTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATCAATCAATAAAATATCGCATATGTTTGTTACACACTTTTAA  398

seq1  TTCCAGCTTTGTTGAGCGGGCCATGTGGACTTCTTTCGAGGTATGTCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTTGTTGAGCGGGCCATGTGGACTTCTTTCGAGGTATGTCTGG  448

seq1  TCTACATGGTGAGTTCTAGTAGCTTTTTATGAGGTAGGCACATAAAGTCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGGTGAGTTCTAGTAGCTTTTTATGAGGTAGGCACATAAAGTCC  498

seq1  ATGGACTCACAAATGTCTATATTTTTAAAACGCCTGCTATCTTAATAATA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCACAAATGTCTATATTTTTAAAACGCCTGCTATCTTAATAATA  548

seq1  AGACAAAACTTTTTTGACTTTTTAAAGTGCAGAGATAAGCCATTTTCCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAACTTTTTTGACTTTTTAAAGTGCAGAGATAAGCCATTTTCCTC  598

seq1  TTCATTGTTTTATTTGAGTGTTCTTTTCTCCTTATTTTGTTCTTTTTTAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTTTATTTGAGTGTTCTTTTCTCCTTATTTTGTTCTTTTTTAT  648

seq1  TCTGCTTTCATCTATCTTCTTTAACCTTTTCTTCATCCTCTTTATCTTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCATCTATCTTCTTTAACCTTTTCTTCATCCTCTTTATCTTTC  698

seq1  CATATCCATTTCCTTCTTTCAAATTTATATGTTAAATTTCCTTTTTACTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCATTTCCTTCTTTCAAATTTATATGTTAAATTTCCTTTTTACTT  748

seq1  CAACAAATTAAAAGTCAATTGACCAGAGTTTTCACTGTTTCATGGCAATT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATTAAAAGTCAATTGACCAGAGTTTTCACTGTTTCATGGCAATT  798

seq1  CACCTTGTACTCTTGCGCGCGCCAGACTGGCCAGCAGTAACGACTCTGCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTACTCTTGCGCGCGCCAGACTGGCCAGCAGTAACGACTCTGCA  848

seq1  ACAGGATCCTTCTGCACACATTTATTCAGTCCTGTTTCTTCTTGTTTATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCCTTCTGCACACATTTATTCAGTCCTGTTTCTTCTTGTTTATA  898

seq1  TCTCCCTTGTTTATATATCTCCCTTGTTTATATCTCCCTTGTTTATATCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTGTTTATATATCTCCCTTGTTTATATCTCCCTTGTTTATATCT  948

seq1  CTCCCTTGTTTATATCTCCCCCAAACCCTGGGCCTCTCACTCTTTTATAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGTTTATATCTCCCCCAAACCCTGGGCCTCTCACTCTTTTATAT  998

seq1  TCTCAGTTCCCATCCACACACAGCAGGCCATGCCACCTCACCAGGCACGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCCCATCCACACACAGCAGGCCATGCCACCTCACCAGGCACGC  1048

seq1  AGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAAATGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAAATGAATTC  1098